Wall clock time and date at job start Thu Apr 9 2020 13:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47154 * 2 1 4 4 C 1.50697 * 109.47280 * 239.99919 * 2 1 3 5 5 O 1.21298 * 120.00254 * 248.54528 * 4 2 1 6 6 N 1.34780 * 120.00094 * 68.54370 * 4 2 1 7 7 C 1.37097 * 120.00191 * 184.77745 * 6 4 2 8 8 H 1.08003 * 119.99719 * 327.70262 * 7 6 4 9 9 C 1.38950 * 119.99926 * 147.71204 * 7 6 4 10 10 N 1.31406 * 120.00117 * 358.21458 * 9 7 6 11 11 Si 1.86798 * 119.99726 * 178.22319 * 9 7 6 12 12 H 1.48495 * 109.47185 * 89.99644 * 11 9 7 13 13 H 1.48505 * 109.46953 * 209.99658 * 11 9 7 14 14 H 1.48499 * 109.47262 * 329.99195 * 11 9 7 15 15 C 1.46498 * 119.99728 * 4.78234 * 6 4 2 16 16 C 1.53000 * 117.50200 * 135.16266 * 15 6 4 17 17 C 1.52999 * 117.50516 * 66.53621 * 15 6 4 18 18 C 1.53003 * 109.47200 * 119.99877 * 2 1 3 19 19 H 1.09006 * 110.28237 * 180.52105 * 18 2 1 20 20 C 1.54477 * 110.24749 * 302.49867 * 18 2 1 21 21 C 1.54785 * 101.69004 * 93.38918 * 20 18 2 22 22 C 1.51272 * 104.12111 * 25.10284 * 21 20 18 23 23 O 1.21282 * 124.94078 * 163.66923 * 22 21 20 24 24 N 1.34420 * 110.11751 * 343.40772 * 22 21 20 25 25 H 1.08993 * 109.47355 * 69.16220 * 1 2 3 26 26 H 1.09007 * 109.46744 * 189.15755 * 1 2 3 27 27 H 1.08996 * 109.47321 * 309.15787 * 1 2 3 28 28 H 0.97003 * 120.00564 * 185.02368 * 10 9 7 29 29 H 1.09007 * 115.54806 * 280.86704 * 15 6 4 30 30 H 1.09003 * 117.49829 * 359.97438 * 16 15 6 31 31 H 1.09003 * 117.49923 * 145.01918 * 16 15 6 32 32 H 1.08994 * 117.50121 * 214.98304 * 17 15 6 33 33 H 1.08999 * 117.49233 * 0.02562 * 17 15 6 34 34 H 1.08995 * 110.97381 * 211.70664 * 20 18 2 35 35 H 1.09004 * 110.96703 * 335.42889 * 20 18 2 36 36 H 1.08998 * 110.61572 * 266.39848 * 21 20 18 37 37 H 1.09009 * 110.42454 * 143.71117 * 21 20 18 38 38 H 0.97002 * 124.35203 * 179.84485 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5968 -1.7790 -1.1259 6 7 1.8545 -0.1585 -2.4471 7 6 2.2228 -0.8482 -3.5732 8 1 3.0673 -1.5208 -3.5424 9 6 1.5099 -0.6817 -4.7542 10 7 0.4614 0.1099 -4.7827 11 14 2.0418 -1.5833 -6.3013 12 1 1.3592 -2.9005 -6.3660 13 1 1.6768 -0.7775 -7.4941 14 1 3.5123 -1.7886 -6.2738 15 6 1.2676 1.1785 -2.5662 16 6 1.9340 2.1590 -3.5333 17 6 2.0783 2.3570 -2.0231 18 6 2.0400 -0.7212 1.2493 19 1 3.1299 -0.7209 1.2673 20 6 1.4841 -0.0444 2.5217 21 6 0.2118 -0.8832 2.7928 22 6 0.5032 -2.2169 2.1409 23 8 -0.1061 -3.2432 2.3563 24 7 1.5320 -2.0976 1.2840 25 1 -0.3634 0.3655 -0.9604 26 1 -0.3633 -1.0147 0.1636 27 1 -0.3634 0.6489 0.7968 28 1 -0.0792 0.1702 -5.5858 29 1 0.1830 1.2262 -2.4684 30 1 2.8093 1.8095 -4.0808 31 1 1.2878 2.8520 -4.0722 32 1 1.5271 3.1800 -1.5684 33 1 3.0485 2.1374 -1.5775 34 1 2.1916 -0.1244 3.3470 35 1 1.2285 0.9976 2.3293 36 1 -0.6602 -0.4169 2.3343 37 1 0.0595 -1.0078 3.8650 38 1 1.8921 -2.8275 0.7562 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599155152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:58 Heat of formation + Delta-G solvation = -37.466943 kcal Electronic energy + Delta-G solvation = -21526.185387 eV Core-core repulsion = 18369.742586 eV Total energy + Delta-G solvation = -3156.442801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55012 -38.71860 -36.65265 -35.84658 -33.06863 -32.13246 -30.94638 -30.81599 -27.28420 -25.33989 -23.46547 -21.80319 -21.34908 -20.63936 -20.14533 -18.67873 -16.91747 -16.88158 -16.07738 -15.86947 -15.17047 -14.89421 -14.31213 -14.14798 -13.75973 -13.48501 -13.17219 -12.98514 -12.72485 -12.44036 -12.16444 -11.73597 -11.65286 -11.37160 -11.16138 -10.94129 -10.83056 -10.71967 -10.62599 -10.51937 -10.33040 -9.76669 -9.54821 -9.41540 -8.84902 -8.68430 -8.32590 -7.65693 -6.32557 -3.97293 2.93805 3.15914 3.24044 3.27344 3.81257 3.85624 4.07800 4.46714 4.61416 4.68390 4.79342 4.93729 5.06476 5.23216 5.28771 5.53430 5.60862 5.70682 5.74836 5.82365 5.82590 5.90253 5.97636 6.11933 6.15489 6.19838 6.29025 6.32978 6.62022 6.75250 6.91128 7.14187 7.25879 7.53413 7.55339 8.15230 8.45189 8.67425 9.15087 9.37184 9.92984 10.73193 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.025273 B = 0.006528 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.633158 B = 4288.057350 C = 4868.495263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 H 0.097 0.903 4 C 0.469 3.531 5 O -0.587 6.587 6 N -0.420 5.420 7 C -0.312 4.312 8 H 0.092 0.908 9 C 0.043 3.957 10 N -0.873 5.873 11 Si 0.919 3.081 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.271 1.271 15 C 0.132 3.868 16 C -0.134 4.134 17 C -0.230 4.230 18 C 0.152 3.848 19 H 0.088 0.912 20 C -0.128 4.128 21 C -0.160 4.160 22 C 0.513 3.487 23 O -0.553 6.553 24 N -0.701 5.701 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.267 0.733 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 7.430 9.387 11.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 H 0.115 0.885 4 C 0.258 3.742 5 O -0.471 6.471 6 N -0.138 5.138 7 C -0.440 4.440 8 H 0.110 0.890 9 C -0.162 4.162 10 N -0.511 5.511 11 Si 0.746 3.254 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.195 1.195 15 C 0.027 3.973 16 C -0.171 4.171 17 C -0.268 4.268 18 C 0.045 3.955 19 H 0.106 0.894 20 C -0.166 4.166 21 C -0.200 4.200 22 C 0.299 3.701 23 O -0.432 6.432 24 N -0.357 5.357 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 0.489 6.570 9.394 11.474 hybrid contribution 0.258 -0.484 -1.365 1.471 sum 0.747 6.085 8.029 10.102 Atomic orbital electron populations 1.21908 0.93739 1.01913 1.02706 1.21674 0.97637 1.00590 0.94049 0.88508 1.19923 0.83955 0.86104 0.84256 1.90444 1.46849 1.23749 1.86094 1.42989 1.54017 1.12109 1.04652 1.19471 1.13994 1.23708 0.86831 0.88983 1.25321 0.95244 0.96240 0.99347 1.69845 1.15826 1.35931 1.29461 0.86034 0.79145 0.79340 0.80850 1.20366 1.20936 1.19545 1.21112 0.94540 0.79560 1.02103 1.22634 1.02631 1.01477 0.90369 1.23582 1.02277 1.01939 0.99019 1.21385 0.99034 0.81583 0.93500 0.89369 1.22689 0.96653 1.00110 0.97156 1.22510 1.00051 0.94931 1.02546 1.20859 0.79596 0.90025 0.79597 1.90712 1.52919 1.33731 1.65851 1.46350 1.34274 1.12002 1.43030 0.91102 0.92672 0.92367 0.92305 0.87777 0.89234 0.89804 0.89555 0.89863 0.90078 0.89097 0.87630 0.88768 0.73755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 7.44 37.16 0.28 -1.99 16 2 C -0.12 -1.90 1.81 -91.77 -0.17 -2.07 16 3 H 0.10 1.39 6.17 -51.93 -0.32 1.07 16 4 C 0.47 10.44 6.74 -10.99 -0.07 10.36 16 5 O -0.59 -14.72 14.18 5.54 0.08 -14.64 16 6 N -0.42 -9.96 2.91 -107.73 -0.31 -10.28 16 7 C -0.31 -8.32 8.63 -14.93 -0.13 -8.45 16 8 H 0.09 2.60 7.53 -52.48 -0.40 2.20 16 9 C 0.04 1.10 4.99 -17.47 -0.09 1.01 16 10 N -0.87 -22.17 10.59 55.50 0.59 -21.58 16 11 Si 0.92 20.50 29.56 -169.99 -5.02 15.48 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 C 0.13 2.71 2.63 -67.93 -0.18 2.53 16 16 C -0.13 -2.61 8.52 -26.73 -0.23 -2.83 16 17 C -0.23 -3.80 8.67 -26.73 -0.23 -4.03 16 18 C 0.15 2.17 3.08 -67.01 -0.21 1.96 16 19 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 20 C -0.13 -1.31 6.23 -25.02 -0.16 -1.46 16 21 C -0.16 -1.89 6.04 -26.66 -0.16 -2.05 16 22 C 0.51 8.65 7.11 -10.86 -0.08 8.57 16 23 O -0.55 -11.55 18.03 5.56 0.10 -11.45 16 24 N -0.70 -11.86 4.85 -52.77 -0.26 -12.11 16 25 H 0.07 1.23 5.55 -51.93 -0.29 0.94 16 26 H 0.05 0.97 6.20 -51.92 -0.32 0.64 16 27 H 0.06 0.69 6.10 -51.93 -0.32 0.37 16 28 H 0.27 6.53 8.32 -40.82 -0.34 6.19 16 29 H 0.10 2.21 6.54 -51.92 -0.34 1.87 16 30 H 0.09 1.92 7.90 -51.93 -0.41 1.51 16 31 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.37 8.02 -51.93 -0.42 0.96 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.75 7.55 -51.93 -0.39 0.36 16 36 H 0.11 1.16 6.20 -51.93 -0.32 0.84 16 37 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 38 H 0.42 8.02 7.62 -40.82 -0.31 7.70 16 LS Contribution 297.73 15.07 4.49 4.49 Total: -1.00 -30.84 297.73 -6.84 -37.68 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -5.08 Total: 10.85 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.42 Total: 1.56 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.02 Total: -43.97 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: 0.18 Total: -26.09 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.84 -6.84 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599155152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.216 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds