Wall clock time and date at job start Thu Apr 9 2020 13:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47154 * 2 1 4 4 C 1.50697 * 109.47280 * 239.99919 * 2 1 3 5 5 O 1.21298 * 120.00254 * 248.54528 * 4 2 1 6 6 N 1.34780 * 120.00094 * 68.54370 * 4 2 1 7 7 C 1.37097 * 120.00191 * 184.77745 * 6 4 2 8 8 H 1.08003 * 119.99719 * 327.70262 * 7 6 4 9 9 C 1.38950 * 119.99926 * 147.71204 * 7 6 4 10 10 N 1.31406 * 120.00117 * 358.21458 * 9 7 6 11 11 Si 1.86798 * 119.99726 * 178.22319 * 9 7 6 12 12 H 1.48495 * 109.47185 * 89.99644 * 11 9 7 13 13 H 1.48505 * 109.46953 * 209.99658 * 11 9 7 14 14 H 1.48499 * 109.47262 * 329.99195 * 11 9 7 15 15 C 1.46498 * 119.99728 * 4.78234 * 6 4 2 16 16 C 1.53000 * 117.50200 * 135.16266 * 15 6 4 17 17 C 1.52999 * 117.50516 * 66.53621 * 15 6 4 18 18 C 1.53003 * 109.47200 * 119.99877 * 2 1 3 19 19 H 1.09006 * 110.28237 * 180.52105 * 18 2 1 20 20 C 1.54477 * 110.24749 * 302.49867 * 18 2 1 21 21 C 1.54785 * 101.69004 * 93.38918 * 20 18 2 22 22 C 1.51272 * 104.12111 * 25.10284 * 21 20 18 23 23 O 1.21282 * 124.94078 * 163.66923 * 22 21 20 24 24 N 1.34420 * 110.11751 * 343.40772 * 22 21 20 25 25 H 1.08993 * 109.47355 * 69.16220 * 1 2 3 26 26 H 1.09007 * 109.46744 * 189.15755 * 1 2 3 27 27 H 1.08996 * 109.47321 * 309.15787 * 1 2 3 28 28 H 0.97003 * 120.00564 * 185.02368 * 10 9 7 29 29 H 1.09007 * 115.54806 * 280.86704 * 15 6 4 30 30 H 1.09003 * 117.49829 * 359.97438 * 16 15 6 31 31 H 1.09003 * 117.49923 * 145.01918 * 16 15 6 32 32 H 1.08994 * 117.50121 * 214.98304 * 17 15 6 33 33 H 1.08999 * 117.49233 * 0.02562 * 17 15 6 34 34 H 1.08995 * 110.97381 * 211.70664 * 20 18 2 35 35 H 1.09004 * 110.96703 * 335.42889 * 20 18 2 36 36 H 1.08998 * 110.61572 * 266.39848 * 21 20 18 37 37 H 1.09009 * 110.42454 * 143.71117 * 21 20 18 38 38 H 0.97002 * 124.35203 * 179.84485 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.5968 -1.7790 -1.1259 6 7 1.8545 -0.1585 -2.4471 7 6 2.2228 -0.8482 -3.5732 8 1 3.0673 -1.5208 -3.5424 9 6 1.5099 -0.6817 -4.7542 10 7 0.4614 0.1099 -4.7827 11 14 2.0418 -1.5833 -6.3013 12 1 1.3592 -2.9005 -6.3660 13 1 1.6768 -0.7775 -7.4941 14 1 3.5123 -1.7886 -6.2738 15 6 1.2676 1.1785 -2.5662 16 6 1.9340 2.1590 -3.5333 17 6 2.0783 2.3570 -2.0231 18 6 2.0400 -0.7212 1.2493 19 1 3.1299 -0.7209 1.2673 20 6 1.4841 -0.0444 2.5217 21 6 0.2118 -0.8832 2.7928 22 6 0.5032 -2.2169 2.1409 23 8 -0.1061 -3.2432 2.3563 24 7 1.5320 -2.0976 1.2840 25 1 -0.3634 0.3655 -0.9604 26 1 -0.3633 -1.0147 0.1636 27 1 -0.3634 0.6489 0.7968 28 1 -0.0792 0.1702 -5.5858 29 1 0.1830 1.2262 -2.4684 30 1 2.8093 1.8095 -4.0808 31 1 1.2878 2.8520 -4.0722 32 1 1.5271 3.1800 -1.5684 33 1 3.0485 2.1374 -1.5775 34 1 2.1916 -0.1244 3.3470 35 1 1.2285 0.9976 2.3293 36 1 -0.6602 -0.4169 2.3343 37 1 0.0595 -1.0078 3.8650 38 1 1.8921 -2.8275 0.7562 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599155152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:11:55 Heat of formation + Delta-G solvation = -59.222888 kcal Electronic energy + Delta-G solvation = -21527.128795 eV Core-core repulsion = 18369.742586 eV Total energy + Delta-G solvation = -3157.386209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 3.39 seconds Orbital eigenvalues (eV) -41.83527 -40.30930 -38.13138 -37.41222 -34.87424 -33.60250 -32.62182 -31.91931 -28.43255 -27.18666 -24.82009 -23.15378 -22.92673 -21.93573 -21.37265 -20.20847 -18.71951 -18.15107 -17.55385 -17.25463 -16.87760 -16.34668 -15.83102 -15.79778 -15.20196 -14.91211 -14.60611 -14.37114 -14.01940 -13.74514 -13.39875 -13.26914 -13.06662 -12.75068 -12.71585 -12.54965 -12.24614 -12.17984 -12.12399 -11.92165 -11.65633 -11.43625 -11.04964 -10.84233 -10.59804 -10.13261 -9.91733 -9.50146 -8.26785 -5.97557 1.33869 1.37639 1.46603 1.66624 2.09953 2.27537 2.61259 2.99970 3.05300 3.27898 3.54536 3.67297 3.87737 4.07690 4.20564 4.29594 4.32508 4.41920 4.49870 4.53503 4.75952 4.80030 4.89762 4.91424 4.97578 5.00885 5.20929 5.21997 5.27391 5.35835 5.46495 5.49069 5.58353 5.94479 6.18285 6.28508 6.59610 7.23187 7.33129 7.56683 8.12494 8.75576 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.025273 B = 0.006528 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.633158 B = 4288.057350 C = 4868.495263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.128 0.872 4 C 0.454 3.546 5 O -0.628 6.628 6 N -0.435 5.435 7 C -0.342 4.342 8 H 0.060 0.940 9 C 0.014 3.986 10 N -0.880 5.880 11 Si 0.969 3.031 12 H -0.284 1.284 13 H -0.269 1.269 14 H -0.274 1.274 15 C 0.110 3.890 16 C -0.148 4.148 17 C -0.180 4.180 18 C 0.144 3.856 19 H 0.087 0.913 20 C -0.109 4.109 21 C -0.150 4.150 22 C 0.500 3.500 23 O -0.607 6.607 24 N -0.712 5.712 25 H 0.050 0.950 26 H 0.027 0.973 27 H 0.109 0.891 28 H 0.269 0.731 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 10.564 11.252 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 H 0.145 0.855 4 C 0.245 3.755 5 O -0.515 6.515 6 N -0.153 5.153 7 C -0.470 4.470 8 H 0.078 0.922 9 C -0.190 4.190 10 N -0.517 5.517 11 Si 0.795 3.205 12 H -0.210 1.210 13 H -0.194 1.194 14 H -0.199 1.199 15 C 0.006 3.994 16 C -0.186 4.186 17 C -0.218 4.218 18 C 0.038 3.962 19 H 0.105 0.895 20 C -0.147 4.147 21 C -0.189 4.189 22 C 0.289 3.711 23 O -0.490 6.490 24 N -0.364 5.364 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.127 0.873 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.149 0.851 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.146 0.854 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.062 9.772 11.264 14.912 hybrid contribution 0.428 -1.519 -1.983 2.534 sum 0.490 8.253 9.281 12.429 Atomic orbital electron populations 1.21893 0.92924 1.01279 1.03508 1.21681 0.97970 1.01385 0.91496 0.85476 1.21133 0.82654 0.86027 0.85708 1.90416 1.48370 1.25760 1.86991 1.43198 1.54250 1.13521 1.04375 1.19328 1.14023 1.24772 0.88922 0.92225 1.25833 0.95322 0.96785 1.01035 1.69909 1.15905 1.35930 1.29931 0.85291 0.78450 0.78182 0.78604 1.21024 1.19369 1.19887 1.21101 0.94483 0.78963 1.04868 1.22568 1.01805 1.01843 0.92391 1.23641 1.01764 1.00099 0.96332 1.21661 0.99236 0.80418 0.94872 0.89488 1.22780 0.95743 1.01017 0.95110 1.22565 1.01371 0.91521 1.03481 1.21874 0.78638 0.91415 0.79217 1.90669 1.54535 1.36259 1.67524 1.46632 1.34435 1.12784 1.42509 0.93057 0.95423 0.87281 0.92140 0.88579 0.92088 0.88975 0.85078 0.89446 0.87579 0.85418 0.86219 0.86361 0.76001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 7.44 71.98 0.54 -3.42 16 2 C -0.10 -3.11 1.81 -11.54 -0.02 -3.13 16 3 H 0.13 3.06 6.17 -2.39 -0.01 3.04 16 4 C 0.45 20.48 6.74 87.66 0.59 21.07 16 5 O -0.63 -32.99 14.18 -3.09 -0.04 -33.03 16 6 N -0.44 -21.05 2.91 -613.12 -1.78 -22.84 16 7 C -0.34 -19.01 8.63 84.04 0.73 -18.29 16 8 H 0.06 3.60 7.53 -2.91 -0.02 3.58 16 9 C 0.01 0.72 4.99 84.93 0.42 1.14 16 10 N -0.88 -45.11 10.59 21.66 0.23 -44.88 16 11 Si 0.97 43.08 29.56 68.60 2.03 45.11 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 C 0.11 4.41 2.63 44.99 0.12 4.53 16 16 C -0.15 -5.64 8.52 30.59 0.26 -5.38 16 17 C -0.18 -5.31 8.67 30.59 0.27 -5.04 16 18 C 0.14 3.77 3.08 45.44 0.14 3.91 16 19 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 20 C -0.11 -1.63 6.23 31.71 0.20 -1.43 16 21 C -0.15 -2.92 6.04 30.64 0.18 -2.74 16 22 C 0.50 16.53 7.11 87.89 0.63 17.15 16 23 O -0.61 -25.94 18.03 -3.03 -0.05 -25.99 16 24 N -0.71 -24.17 4.85 -439.45 -2.13 -26.30 16 25 H 0.05 1.69 5.55 -2.39 -0.01 1.67 16 26 H 0.03 0.93 6.20 -2.38 -0.01 0.91 16 27 H 0.11 1.98 6.10 -2.39 -0.01 1.97 16 28 H 0.27 13.17 8.32 -92.71 -0.77 12.40 16 29 H 0.10 3.98 6.54 -2.38 -0.02 3.97 16 30 H 0.06 2.65 7.90 -2.39 -0.02 2.63 16 31 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.09 2.55 8.02 -2.39 -0.02 2.53 16 34 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.13 1.08 7.55 -2.38 -0.02 1.07 16 36 H 0.12 2.04 6.20 -2.39 -0.01 2.03 16 37 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.40 16.22 7.62 -92.71 -0.71 15.51 16 Total: -1.00 -73.82 297.73 2.67 -71.15 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.38 Total: 28.40 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 4.05 Total: 8.38 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -3.69 Total: -94.02 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -0.10 Total: -59.03 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -73.82 2.67 -71.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599155152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.931 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.39 seconds