Wall clock time and date at job start Thu Apr 9 2020 13:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46883 * 2 1 4 4 C 1.50699 * 109.47139 * 240.00152 * 2 1 3 5 5 O 1.21293 * 119.99679 * 277.75767 * 4 2 1 6 6 N 1.34773 * 120.00002 * 97.76257 * 4 2 1 7 7 C 1.37097 * 119.99807 * 185.26770 * 6 4 2 8 8 H 1.08005 * 120.00009 * 328.34776 * 7 6 4 9 9 C 1.38952 * 120.00067 * 148.34701 * 7 6 4 10 10 N 1.31415 * 120.00038 * 349.56229 * 9 7 6 11 11 Si 1.86798 * 120.00152 * 169.56023 * 9 7 6 12 12 H 1.48508 * 109.47048 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47157 * 119.99708 * 11 9 7 14 14 H 1.48498 * 109.47540 * 239.99976 * 11 9 7 15 15 C 1.46500 * 120.00260 * 5.26227 * 6 4 2 16 16 C 1.53002 * 117.49631 * 132.60048 * 15 6 4 17 17 C 1.52999 * 60.00199 * 252.51345 * 16 15 6 18 18 C 1.52998 * 109.47195 * 119.99803 * 2 1 3 19 19 H 1.08996 * 110.21590 * 59.52675 * 18 2 1 20 20 C 1.54483 * 110.31940 * 297.55158 * 18 2 1 21 21 C 1.54634 * 101.76131 * 215.54580 * 20 18 2 22 22 C 1.51285 * 104.19690 * 24.79508 * 21 20 18 23 23 O 1.21278 * 124.93952 * 163.76923 * 22 21 20 24 24 N 1.34420 * 110.11395 * 343.74874 * 22 21 20 25 25 H 1.09003 * 109.46928 * 57.58965 * 1 2 3 26 26 H 1.09006 * 109.47122 * 177.58550 * 1 2 3 27 27 H 1.08993 * 109.47265 * 297.58376 * 1 2 3 28 28 H 0.96993 * 120.00071 * 185.08847 * 10 9 7 29 29 H 1.09000 * 115.55037 * 278.31296 * 15 6 4 30 30 H 1.09001 * 117.49874 * 0.02562 * 16 15 6 31 31 H 1.09005 * 117.49808 * 145.02193 * 16 15 6 32 32 H 1.08995 * 117.49877 * 252.51285 * 17 16 15 33 33 H 1.08999 * 117.49348 * 107.49157 * 17 16 15 34 34 H 1.09001 * 110.96579 * 333.65906 * 20 18 2 35 35 H 1.08991 * 110.97104 * 97.39100 * 20 18 2 36 36 H 1.09001 * 110.48679 * 143.47184 * 21 20 18 37 37 H 1.09003 * 110.48130 * 266.11323 * 21 20 18 38 38 H 0.97004 * 124.34353 * 179.85897 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.1008 -1.9213 -1.2461 6 7 2.4056 -0.0002 -2.3134 7 6 2.7596 -0.6475 -3.4689 8 1 3.2299 -1.6186 -3.4216 9 6 2.5134 -0.0541 -4.7010 10 7 1.7634 1.0225 -4.7737 11 14 3.2486 -0.7868 -6.2541 12 1 4.0475 -1.9888 -5.9043 13 1 2.1571 -1.1722 -7.1844 14 1 4.1251 0.2175 -6.9085 15 6 2.4329 1.4634 -2.2558 16 6 3.6799 2.1684 -2.7934 17 6 3.4219 2.1139 -1.2863 18 6 2.0400 -0.7212 1.2492 19 1 1.6765 -1.7486 1.2658 20 6 1.5871 0.0266 2.5229 21 6 2.8019 -0.1782 3.4574 22 6 3.9623 -0.4041 2.5135 23 8 5.1329 -0.3287 2.8213 24 7 3.5070 -0.7009 1.2840 25 1 -0.3633 0.5508 -0.8676 26 1 -0.3634 -1.0268 -0.0433 27 1 -0.3633 0.4758 0.9108 28 1 1.5307 1.3939 -5.6390 29 1 1.4725 1.9577 -2.4021 30 1 4.4797 1.5432 -3.1903 31 1 3.5400 3.1267 -3.2937 32 1 3.1122 3.0363 -0.7951 33 1 4.0521 1.4529 -0.6915 34 1 1.4269 1.0851 2.3175 35 1 0.6898 -0.4273 2.9434 36 1 2.9711 0.7117 4.0637 37 1 2.6514 -1.0509 4.0929 38 1 4.0753 -0.8824 0.5191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599155153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:12:01 Heat of formation + Delta-G solvation = -67.316617 kcal Electronic energy + Delta-G solvation = -21408.697198 eV Core-core repulsion = 18250.960018 eV Total energy + Delta-G solvation = -3157.737180 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -41.64316 -40.40059 -38.17866 -37.46630 -34.99513 -33.87896 -32.88120 -32.09969 -27.68859 -27.36266 -24.87661 -23.31150 -23.08902 -22.03413 -21.35852 -20.21506 -18.77337 -18.33754 -17.78579 -17.12284 -16.99893 -16.25881 -16.00962 -15.68149 -15.05769 -14.96787 -14.74732 -14.45269 -13.90352 -13.78864 -13.56095 -13.35120 -13.01021 -12.91238 -12.71663 -12.57486 -12.31874 -12.23104 -12.18622 -11.99345 -11.83210 -11.49235 -11.09888 -10.89654 -10.72665 -10.13886 -10.05756 -9.54277 -8.30723 -5.99533 1.32377 1.38104 1.48993 1.60903 2.03678 2.25819 2.44173 2.91601 3.01134 3.19364 3.46312 3.61715 3.82328 4.02437 4.16284 4.21938 4.34545 4.37361 4.42856 4.48796 4.60949 4.77265 4.80896 4.91279 5.00039 5.07125 5.09691 5.15193 5.28878 5.33295 5.39957 5.42240 5.48979 5.76603 6.11925 6.18167 6.55145 7.21205 7.21471 7.51649 8.08763 8.74105 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.026040 B = 0.006169 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.008156 B = 4538.027408 C = 4640.325324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 H 0.106 0.894 4 C 0.454 3.546 5 O -0.630 6.630 6 N -0.433 5.433 7 C -0.347 4.347 8 H 0.059 0.941 9 C 0.018 3.982 10 N -0.880 5.880 11 Si 0.970 3.030 12 H -0.280 1.280 13 H -0.275 1.275 14 H -0.268 1.268 15 C 0.112 3.888 16 C -0.156 4.156 17 C -0.181 4.181 18 C 0.144 3.856 19 H 0.076 0.924 20 C -0.112 4.112 21 C -0.142 4.142 22 C 0.505 3.495 23 O -0.598 6.598 24 N -0.724 5.724 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.111 0.889 28 H 0.271 0.729 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.128 0.872 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 5.543 12.084 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.129 4.129 3 H 0.124 0.876 4 C 0.244 3.756 5 O -0.517 6.517 6 N -0.151 5.151 7 C -0.475 4.475 8 H 0.077 0.923 9 C -0.186 4.186 10 N -0.517 5.517 11 Si 0.795 3.205 12 H -0.205 1.205 13 H -0.200 1.200 14 H -0.194 1.194 15 C 0.007 3.993 16 C -0.193 4.193 17 C -0.219 4.219 18 C 0.039 3.961 19 H 0.094 0.906 20 C -0.150 4.150 21 C -0.181 4.181 22 C 0.294 3.706 23 O -0.480 6.480 24 N -0.375 5.375 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.146 0.854 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.408 5.205 12.152 13.935 hybrid contribution 0.927 -0.857 -2.097 2.448 sum -3.481 4.348 10.055 11.494 Atomic orbital electron populations 1.21617 0.90641 1.02388 1.03893 1.21649 0.99171 1.00852 0.91238 0.87622 1.21072 0.80747 0.87261 0.86482 1.90494 1.60288 1.16320 1.84607 1.43250 1.57265 1.04349 1.10268 1.19345 1.40290 1.03483 0.84380 0.92273 1.25823 0.95768 0.96266 1.00748 1.69883 1.34112 1.21523 1.26153 0.85226 0.78424 0.78266 0.78576 1.20478 1.20034 1.19354 1.21110 0.94447 0.80684 1.03012 1.22711 0.99637 1.01359 0.95613 1.23519 1.02873 1.03052 0.92491 1.21753 0.78412 1.00340 0.95585 0.90614 1.22827 0.98578 1.02723 0.90844 1.22395 0.91618 1.06580 0.97545 1.21835 0.90263 0.74102 0.84405 1.90689 1.21458 1.55366 1.80460 1.46652 1.09282 1.69765 1.11795 0.93323 0.93233 0.87035 0.91891 0.88166 0.91683 0.88269 0.85385 0.90585 0.87730 0.85520 0.85970 0.85966 0.76975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.02 71.98 0.65 -2.66 16 2 C -0.11 -3.35 1.94 -11.54 -0.02 -3.37 16 3 H 0.11 3.06 5.12 -2.38 -0.01 3.05 16 4 C 0.45 20.79 5.82 87.66 0.51 21.30 16 5 O -0.63 -34.06 16.14 -3.07 -0.05 -34.11 16 6 N -0.43 -21.32 2.89 -613.12 -1.77 -23.09 16 7 C -0.35 -19.40 8.69 84.04 0.73 -18.67 16 8 H 0.06 3.62 7.54 -2.91 -0.02 3.60 16 9 C 0.02 0.93 4.84 84.93 0.41 1.34 16 10 N -0.88 -45.10 11.21 21.66 0.24 -44.86 16 11 Si 0.97 42.64 29.57 68.60 2.03 44.67 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 15 C 0.11 4.65 3.26 44.99 0.15 4.80 16 16 C -0.16 -6.12 9.02 30.59 0.28 -5.84 16 17 C -0.18 -5.99 8.40 30.60 0.26 -5.74 16 18 C 0.14 3.86 2.71 45.45 0.12 3.98 16 19 H 0.08 2.25 7.91 -2.39 -0.02 2.23 16 20 C -0.11 -1.68 5.58 31.65 0.18 -1.50 16 21 C -0.14 -2.47 6.86 30.59 0.21 -2.26 16 22 C 0.51 15.33 8.43 87.90 0.74 16.07 16 23 O -0.60 -23.56 18.03 -3.02 -0.05 -23.61 16 24 N -0.72 -23.19 5.74 -439.45 -2.52 -25.71 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.11 1.75 7.24 -2.39 -0.02 1.74 16 28 H 0.27 13.15 8.32 -92.71 -0.77 12.38 16 29 H 0.10 4.25 8.02 -2.39 -0.02 4.23 16 30 H 0.06 2.88 7.98 -2.39 -0.02 2.87 16 31 H 0.10 3.57 8.14 -2.38 -0.02 3.55 16 32 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.10 1.24 7.89 -2.39 -0.02 1.22 16 35 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.39 15.02 8.45 -92.71 -0.78 14.24 16 Total: -1.00 -73.01 313.07 2.36 -70.64 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.28 Total: 28.62 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 4.21 Total: 7.45 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -4.05 Total: -93.66 kcal Atomic # 8 Polarization: -57.62 SS G_CDS: -0.10 Total: -57.72 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -73.01 2.36 -70.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599155153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.326 kcal (2) G-P(sol) polarization free energy of solvation -73.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds