Wall clock time and date at job start Thu Apr 9 2020 13:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 115.56152 * 2 1 4 4 C 1.53076 * 117.51269 * 214.29741 * 2 1 3 5 5 C 1.52998 * 117.49860 * 145.68723 * 2 1 3 6 6 H 1.09001 * 117.50056 * 215.00260 * 5 2 1 7 7 C 1.50703 * 117.49708 * 0.02562 * 5 2 1 8 8 O 1.21287 * 120.00061 * 359.91063 * 7 5 2 9 9 N 1.34780 * 119.99824 * 179.91017 * 7 5 2 10 10 C 1.39918 * 120.00038 * 174.72479 * 9 7 5 11 11 C 1.38873 * 120.07092 * 326.55973 * 10 9 7 12 12 C 1.38119 * 119.92837 * 179.76647 * 11 10 9 13 13 C 1.38281 * 120.07087 * 0.48057 * 12 11 10 14 14 C 1.50700 * 119.92852 * 179.74948 * 13 12 11 15 15 C 1.50697 * 109.46780 * 270.01752 * 14 13 12 16 16 H 1.08002 * 120.00554 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99734 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99948 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99849 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47011 * 90.00290 * 19 17 15 21 21 H 1.48496 * 109.47022 * 209.99858 * 19 17 15 22 22 H 1.48497 * 109.47252 * 330.00232 * 19 17 15 23 23 C 1.38283 * 120.13871 * 359.76786 * 13 12 11 24 24 C 1.38111 * 120.07305 * 0.02562 * 23 13 12 25 25 H 1.09002 * 109.47064 * 274.31229 * 1 2 3 26 26 H 1.09004 * 109.46761 * 34.30988 * 1 2 3 27 27 H 1.08992 * 109.47016 * 154.31126 * 1 2 3 28 28 H 1.09002 * 109.46973 * 205.68729 * 3 2 1 29 29 H 1.08997 * 109.46825 * 325.69102 * 3 2 1 30 30 H 1.09001 * 109.47029 * 85.68713 * 3 2 1 31 31 H 1.08999 * 117.49376 * 145.04037 * 4 2 1 32 32 H 1.08994 * 117.52764 * 359.97438 * 4 2 1 33 33 H 0.97001 * 119.99671 * 354.45537 * 9 7 5 34 34 H 1.08000 * 120.03970 * 359.96638 * 11 10 9 35 35 H 1.07995 * 119.96477 * 180.20790 * 12 11 10 36 36 H 1.08994 * 109.47349 * 30.02413 * 14 13 12 37 37 H 1.09003 * 109.46643 * 150.02071 * 14 13 12 38 38 H 0.97006 * 119.99894 * 180.02562 * 18 17 15 39 39 H 1.08006 * 119.96213 * 179.97438 * 23 13 12 40 40 H 1.08003 * 120.03731 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2372 -1.1216 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 3.1714 -0.8750 1.2686 7 6 1.3720 -2.1409 1.4604 8 8 0.1637 -2.0528 1.4017 9 7 1.9415 -3.1509 2.1475 10 6 1.1437 -4.0334 2.8839 11 6 -0.0168 -3.5773 3.4953 12 6 -0.8047 -4.4520 4.2175 13 6 -0.4339 -5.7785 4.3406 14 6 -1.2930 -6.7289 5.1341 15 6 -0.8436 -6.7306 6.5725 16 1 -0.0186 -6.1057 6.8813 17 6 -1.4856 -7.5300 7.4944 18 7 -2.4898 -8.2914 7.1183 19 14 -0.9289 -7.5317 9.2775 20 1 -1.6752 -6.4915 10.0300 21 1 -1.1950 -8.8635 9.8779 22 1 0.5260 -7.2412 9.3422 23 6 0.7238 -6.2346 3.7374 24 6 1.5138 -5.3659 3.0102 25 1 -0.3633 0.0773 1.0248 26 1 -0.3633 0.8489 -0.5793 27 1 -0.3633 -0.9260 -0.4454 28 1 3.1825 1.3084 -0.4455 29 1 1.5812 2.0742 -0.5792 30 1 2.2773 1.7414 1.0248 31 1 3.1724 -0.8757 -1.2679 32 1 1.6126 -1.8598 -1.2680 33 1 2.9042 -3.2683 2.1282 34 1 -0.3047 -2.5404 3.4034 35 1 -1.7091 -4.0987 4.6904 36 1 -2.3339 -6.4101 5.0790 37 1 -1.1986 -7.7338 4.7227 38 1 -2.9417 -8.8535 7.7670 39 1 1.0110 -7.2711 3.8357 40 1 2.4181 -5.7227 2.5396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928401791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:39:39 Heat of formation + Delta-G solvation = 0.487816 kcal Electronic energy + Delta-G solvation = -20011.652728 eV Core-core repulsion = 16984.511592 eV Total energy + Delta-G solvation = -3027.141137 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.65304 -38.77626 -37.16545 -34.81721 -33.01047 -30.70167 -30.28840 -29.55809 -27.64011 -26.80178 -24.52228 -22.84458 -22.34857 -20.78135 -19.98471 -19.30691 -17.32885 -17.00281 -16.28735 -15.34053 -15.01642 -14.83417 -14.49584 -14.21509 -13.94452 -13.78177 -13.41920 -13.00468 -12.78413 -12.72198 -12.58214 -12.21368 -12.09567 -11.96052 -11.46679 -11.35806 -11.26600 -10.79758 -10.57926 -10.47886 -10.35171 -10.11803 -9.91871 -9.67159 -9.35155 -9.22738 -8.41129 -8.27582 -7.35727 -6.02363 -4.06442 1.83750 2.07045 2.60031 3.06061 3.31329 3.37432 3.41402 3.51559 4.34446 4.38738 4.42429 4.50268 4.60509 4.83090 4.87761 5.27425 5.31584 5.38157 5.40766 5.44949 5.57961 5.64499 5.67869 5.77735 5.84958 5.95720 5.99559 6.08262 6.13496 6.21404 6.38128 6.65694 6.80276 6.93310 7.17921 7.22033 7.52369 7.55485 7.72602 7.88329 7.93402 8.23107 8.34132 8.98921 9.57197 11.07223 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.040081 B = 0.003143 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.420561 B = 8906.743560 C = 8983.198054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.092 4.092 3 C -0.117 4.117 4 C -0.148 4.148 5 C -0.189 4.189 6 H 0.123 0.877 7 C 0.537 3.463 8 O -0.515 6.515 9 N -0.666 5.666 10 C 0.106 3.894 11 C -0.117 4.117 12 C -0.108 4.108 13 C -0.043 4.043 14 C 0.048 3.952 15 C -0.511 4.511 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.108 4.108 24 C -0.144 4.144 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.405 0.595 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.122 0.878 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.806 15.223 -14.744 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.093 4.093 3 C -0.174 4.174 4 C -0.185 4.185 5 C -0.210 4.210 6 H 0.141 0.859 7 C 0.325 3.675 8 O -0.390 6.390 9 N -0.310 5.310 10 C 0.013 3.987 11 C -0.137 4.137 12 C -0.126 4.126 13 C -0.043 4.043 14 C 0.011 3.989 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.127 4.127 24 C -0.165 4.165 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.240 0.760 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.820 15.205 -14.731 23.775 hybrid contribution 0.950 -0.253 1.129 1.497 sum 11.769 14.953 -13.602 23.390 Atomic orbital electron populations 1.21380 0.90481 1.01525 1.02822 1.21610 0.96129 0.90454 1.01082 1.21404 0.99889 0.93802 1.02275 1.23245 1.02869 1.01692 0.90706 1.22366 1.02008 1.00853 0.95822 0.85926 1.19749 0.88341 0.81237 0.78175 1.90733 1.14371 1.73913 1.60018 1.43389 1.10272 1.28899 1.48474 1.17523 0.94637 0.89193 0.97317 1.20972 0.94991 1.00127 0.97631 1.20996 0.99856 0.93239 0.98553 1.20707 0.94983 0.95106 0.93519 1.18349 0.94000 0.92922 0.93635 1.21072 1.16632 1.24712 0.92493 0.92471 1.25020 0.95009 0.95363 0.98992 1.69961 1.22006 1.26748 1.34626 0.86537 0.79102 0.77305 0.84765 1.20595 1.21181 1.19825 1.20884 0.94733 0.99384 0.97652 1.20742 1.01229 0.91416 1.03085 0.91231 0.93249 0.91562 0.92319 0.91568 0.91917 0.87848 0.88167 0.76044 0.85919 0.86111 0.95306 0.95320 0.92852 0.86024 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 8.09 37.16 0.30 -0.84 16 2 C -0.09 -0.83 2.70 -154.47 -0.42 -1.25 16 3 C -0.12 -0.79 9.85 37.16 0.37 -0.42 16 4 C -0.15 -1.19 9.53 -26.69 -0.25 -1.45 16 5 C -0.19 -1.77 5.91 -91.77 -0.54 -2.31 16 6 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 7 C 0.54 7.10 7.33 -10.98 -0.08 7.02 16 8 O -0.52 -8.55 10.80 5.55 0.06 -8.49 16 9 N -0.67 -8.58 5.34 -9.86 -0.05 -8.63 16 10 C 0.11 1.77 6.28 -83.70 -0.53 1.24 16 11 C -0.12 -2.20 8.66 -39.39 -0.34 -2.55 16 12 C -0.11 -2.24 9.69 -39.61 -0.38 -2.62 16 13 C -0.04 -0.95 5.07 -104.59 -0.53 -1.48 16 14 C 0.05 1.25 5.10 -29.04 -0.15 1.10 16 15 C -0.51 -14.42 9.09 -34.44 -0.31 -14.73 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 19 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.11 -2.11 9.69 -39.61 -0.38 -2.50 16 24 C -0.14 -2.41 9.96 -39.39 -0.39 -2.80 16 25 H 0.07 0.88 7.26 -51.93 -0.38 0.50 16 26 H 0.05 0.44 7.92 -51.93 -0.41 0.03 16 27 H 0.07 0.82 7.02 -51.93 -0.36 0.46 16 28 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 29 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.61 8.05 -51.93 -0.42 0.19 16 32 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 33 H 0.40 3.78 8.82 -40.82 -0.36 3.42 16 34 H 0.12 2.27 6.43 -52.49 -0.34 1.94 16 35 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 36 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 40 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -31.91 334.75 -8.98 -40.89 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.00 Total: 2.49 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.74 Total: -22.04 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.68 Total: -34.53 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.06 Total: -8.49 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.91 -8.98 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.380 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds