Wall clock time and date at job start Thu Apr 9 2020 13:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 115.56152 * 2 1 4 4 C 1.53076 * 117.51269 * 214.29741 * 2 1 3 5 5 C 1.52998 * 117.49860 * 145.68723 * 2 1 3 6 6 H 1.09001 * 117.50056 * 215.00260 * 5 2 1 7 7 C 1.50703 * 117.49708 * 0.02562 * 5 2 1 8 8 O 1.21287 * 120.00061 * 359.91063 * 7 5 2 9 9 N 1.34780 * 119.99824 * 179.91017 * 7 5 2 10 10 C 1.39918 * 120.00038 * 174.72479 * 9 7 5 11 11 C 1.38873 * 120.07092 * 326.55973 * 10 9 7 12 12 C 1.38119 * 119.92837 * 179.76647 * 11 10 9 13 13 C 1.38281 * 120.07087 * 0.48057 * 12 11 10 14 14 C 1.50700 * 119.92852 * 179.74948 * 13 12 11 15 15 C 1.50697 * 109.46780 * 270.01752 * 14 13 12 16 16 H 1.08002 * 120.00554 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99734 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99948 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99849 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47011 * 90.00290 * 19 17 15 21 21 H 1.48496 * 109.47022 * 209.99858 * 19 17 15 22 22 H 1.48497 * 109.47252 * 330.00232 * 19 17 15 23 23 C 1.38283 * 120.13871 * 359.76786 * 13 12 11 24 24 C 1.38111 * 120.07305 * 0.02562 * 23 13 12 25 25 H 1.09002 * 109.47064 * 274.31229 * 1 2 3 26 26 H 1.09004 * 109.46761 * 34.30988 * 1 2 3 27 27 H 1.08992 * 109.47016 * 154.31126 * 1 2 3 28 28 H 1.09002 * 109.46973 * 205.68729 * 3 2 1 29 29 H 1.08997 * 109.46825 * 325.69102 * 3 2 1 30 30 H 1.09001 * 109.47029 * 85.68713 * 3 2 1 31 31 H 1.08999 * 117.49376 * 145.04037 * 4 2 1 32 32 H 1.08994 * 117.52764 * 359.97438 * 4 2 1 33 33 H 0.97001 * 119.99671 * 354.45537 * 9 7 5 34 34 H 1.08000 * 120.03970 * 359.96638 * 11 10 9 35 35 H 1.07995 * 119.96477 * 180.20790 * 12 11 10 36 36 H 1.08994 * 109.47349 * 30.02413 * 14 13 12 37 37 H 1.09003 * 109.46643 * 150.02071 * 14 13 12 38 38 H 0.97006 * 119.99894 * 180.02562 * 18 17 15 39 39 H 1.08006 * 119.96213 * 179.97438 * 23 13 12 40 40 H 1.08003 * 120.03731 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2372 -1.1216 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 3.1714 -0.8750 1.2686 7 6 1.3720 -2.1409 1.4604 8 8 0.1637 -2.0528 1.4017 9 7 1.9415 -3.1509 2.1475 10 6 1.1437 -4.0334 2.8839 11 6 -0.0168 -3.5773 3.4953 12 6 -0.8047 -4.4520 4.2175 13 6 -0.4339 -5.7785 4.3406 14 6 -1.2930 -6.7289 5.1341 15 6 -0.8436 -6.7306 6.5725 16 1 -0.0186 -6.1057 6.8813 17 6 -1.4856 -7.5300 7.4944 18 7 -2.4898 -8.2914 7.1183 19 14 -0.9289 -7.5317 9.2775 20 1 -1.6752 -6.4915 10.0300 21 1 -1.1950 -8.8635 9.8779 22 1 0.5260 -7.2412 9.3422 23 6 0.7238 -6.2346 3.7374 24 6 1.5138 -5.3659 3.0102 25 1 -0.3633 0.0773 1.0248 26 1 -0.3633 0.8489 -0.5793 27 1 -0.3633 -0.9260 -0.4454 28 1 3.1825 1.3084 -0.4455 29 1 1.5812 2.0742 -0.5792 30 1 2.2773 1.7414 1.0248 31 1 3.1724 -0.8757 -1.2679 32 1 1.6126 -1.8598 -1.2680 33 1 2.9042 -3.2683 2.1282 34 1 -0.3047 -2.5404 3.4034 35 1 -1.7091 -4.0987 4.6904 36 1 -2.3339 -6.4101 5.0790 37 1 -1.1986 -7.7338 4.7227 38 1 -2.9417 -8.8535 7.7670 39 1 1.0110 -7.2711 3.8357 40 1 2.4181 -5.7227 2.5396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928401791.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:39:37 Heat of formation + Delta-G solvation = -17.482378 kcal Electronic energy + Delta-G solvation = -20012.431975 eV Core-core repulsion = 16984.511592 eV Total energy + Delta-G solvation = -3027.920383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.73199 -40.04207 -38.19755 -36.20769 -34.98163 -32.35384 -31.79956 -30.42210 -28.51991 -28.32761 -25.86022 -24.42121 -23.80528 -22.09312 -21.24242 -20.13730 -18.54777 -18.38456 -18.12513 -16.84454 -16.35893 -16.02654 -15.90483 -15.43325 -15.05102 -14.69556 -14.56412 -14.44495 -14.34621 -14.03381 -13.67157 -13.47370 -13.29287 -13.20615 -12.88366 -12.70879 -12.62038 -12.44894 -12.13414 -12.00996 -11.65728 -11.52393 -11.18168 -11.05484 -10.80259 -10.61275 -10.45898 -9.78523 -8.87340 -8.18986 -6.34033 0.41100 0.54597 1.39314 1.40897 1.51016 1.53325 2.03510 2.39605 2.75740 3.00098 3.10162 3.59032 3.69362 3.84662 4.01284 4.12360 4.16366 4.20136 4.36298 4.59161 4.62971 4.68427 4.74525 4.83050 4.86204 4.99307 5.07518 5.09242 5.10523 5.12685 5.30822 5.32333 5.33808 5.40728 5.47976 5.53333 5.60591 5.74648 6.06296 6.11009 6.23791 6.49986 6.78662 7.20036 7.34516 8.89099 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.040081 B = 0.003143 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.420561 B = 8906.743560 C = 8983.198054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.102 4.102 3 C -0.112 4.112 4 C -0.131 4.131 5 C -0.189 4.189 6 H 0.155 0.845 7 C 0.531 3.469 8 O -0.554 6.554 9 N -0.655 5.655 10 C 0.121 3.879 11 C -0.124 4.124 12 C -0.120 4.120 13 C -0.075 4.075 14 C 0.057 3.943 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.968 3.032 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.113 4.113 24 C -0.130 4.130 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.426 0.574 34 H 0.122 0.878 35 H 0.109 0.891 36 H -0.002 1.002 37 H 0.007 0.993 38 H 0.266 0.734 39 H 0.126 0.874 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.384 16.721 -15.575 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 C -0.169 4.169 4 C -0.169 4.169 5 C -0.210 4.210 6 H 0.172 0.828 7 C 0.321 3.679 8 O -0.432 6.432 9 N -0.301 5.301 10 C 0.027 3.973 11 C -0.144 4.144 12 C -0.139 4.139 13 C -0.076 4.076 14 C 0.020 3.980 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.199 1.199 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.132 4.132 24 C -0.150 4.150 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.104 0.896 33 H 0.265 0.735 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.016 0.984 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 14.442 16.720 -15.581 27.035 hybrid contribution -0.187 -0.654 1.261 1.433 sum 14.255 16.066 -14.320 25.814 Atomic orbital electron populations 1.21291 0.92567 1.00945 1.01198 1.21716 0.94818 0.92058 1.01692 1.21403 1.00781 0.92122 1.02578 1.23343 1.03668 1.00273 0.89569 1.22418 1.02351 0.99655 0.96601 0.82776 1.20558 0.88356 0.81391 0.77600 1.90739 1.16488 1.74684 1.61289 1.43353 1.11089 1.28071 1.47568 1.17617 0.93842 0.89984 0.95845 1.20974 0.95891 0.99715 0.97854 1.20914 1.00184 0.93238 0.99585 1.20394 0.96410 0.94964 0.95793 1.18086 0.93231 0.92745 0.93896 1.21388 1.16676 1.24734 0.93786 0.92619 1.25966 0.94925 0.94766 1.03890 1.70089 1.23178 1.27506 1.36377 0.85408 0.79056 0.77633 0.78736 1.19891 1.20376 1.18744 1.20987 0.94143 1.00290 0.97732 1.21045 1.01838 0.90578 1.01494 0.93743 0.91731 0.93868 0.90225 0.91161 0.92006 0.84571 0.89572 0.73462 0.86004 0.87298 0.98357 0.97505 0.92554 0.85556 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 8.09 71.98 0.58 -1.62 16 2 C -0.10 -1.59 2.70 -52.15 -0.14 -1.73 16 3 C -0.11 -1.13 9.85 71.98 0.71 -0.42 16 4 C -0.13 -1.66 9.53 30.62 0.29 -1.37 16 5 C -0.19 -2.91 5.91 -11.54 -0.07 -2.98 16 6 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 7 C 0.53 13.04 7.33 87.66 0.64 13.68 16 8 O -0.55 -18.39 10.80 -3.05 -0.03 -18.42 16 9 N -0.65 -14.95 5.34 -303.50 -1.62 -16.57 16 10 C 0.12 3.83 6.28 38.15 0.24 4.07 16 11 C -0.12 -4.71 8.66 22.39 0.19 -4.52 16 12 C -0.12 -5.24 9.69 22.25 0.22 -5.03 16 13 C -0.07 -3.47 5.07 -19.84 -0.10 -3.58 16 14 C 0.06 3.19 5.10 29.10 0.15 3.33 16 15 C -0.53 -30.84 9.09 25.60 0.23 -30.61 16 16 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 17 C 0.00 0.14 5.46 84.66 0.46 0.61 16 18 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 19 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 23 C -0.11 -4.39 9.69 22.25 0.22 -4.18 16 24 C -0.13 -3.99 9.96 22.39 0.22 -3.77 16 25 H 0.04 1.15 7.26 -2.39 -0.02 1.14 16 26 H 0.06 1.12 7.92 -2.39 -0.02 1.10 16 27 H 0.04 1.10 7.02 -2.39 -0.02 1.08 16 28 H 0.08 0.49 7.90 -2.39 -0.02 0.47 16 29 H 0.07 0.66 7.92 -2.39 -0.02 0.64 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.14 0.88 8.05 -2.39 -0.02 0.86 16 32 H 0.09 1.37 8.05 -2.39 -0.02 1.35 16 33 H 0.43 6.09 8.82 -92.71 -0.82 5.27 16 34 H 0.12 4.62 6.43 -2.91 -0.02 4.60 16 35 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.00 -0.11 8.08 -2.39 -0.02 -0.13 16 37 H 0.01 0.39 8.08 -2.39 -0.02 0.37 16 38 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 39 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -72.87 334.75 4.72 -68.15 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.21 Total: 14.97 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 3.85 Total: -38.10 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -1.34 Total: -73.49 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.03 Total: -18.42 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -72.87 4.72 -68.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401791.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.673 kcal (2) G-P(sol) polarization free energy of solvation -72.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds