Wall clock time and date at job start Thu Apr 9 2020 13:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34814 * 119.99813 * 2 1 4 4 C 1.46426 * 119.99892 * 179.97438 * 3 2 1 5 5 O 1.21701 * 120.00028 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99912 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99523 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47266 * 324.99728 * 7 6 4 9 9 C 1.52993 * 109.47156 * 85.00378 * 7 6 4 10 10 C 1.50703 * 109.46585 * 204.99725 * 7 6 4 11 11 H 1.08003 * 120.00123 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99923 * 179.97438 * 10 7 6 13 13 N 1.31510 * 119.99770 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 119.99865 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47429 * 59.99974 * 14 12 10 16 16 H 1.48507 * 109.47055 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47098 * 299.99736 * 14 12 10 18 18 C 1.47208 * 120.00085 * 179.97438 * 2 1 3 19 19 C 1.39855 * 120.17108 * 254.97964 * 18 2 1 20 20 C 1.37874 * 119.82136 * 180.02562 * 19 18 2 21 21 C 1.38419 * 120.17575 * 0.02562 * 20 19 18 22 22 C 1.38382 * 120.34449 * 359.95831 * 21 20 19 23 23 C 1.37912 * 120.17243 * 0.04359 * 22 21 20 24 24 C 1.50690 * 120.09005 * 180.25520 * 23 22 21 25 25 H 1.08999 * 109.47359 * 270.00078 * 1 2 3 26 26 H 1.08999 * 109.47352 * 30.00745 * 1 2 3 27 27 H 1.09005 * 109.46904 * 150.00036 * 1 2 3 28 28 H 1.07998 * 119.99975 * 359.97438 * 3 2 1 29 29 H 0.96991 * 120.00147 * 359.97438 * 6 4 3 30 30 H 1.08999 * 109.47563 * 59.99533 * 9 7 6 31 31 H 1.08998 * 109.47124 * 179.97438 * 9 7 6 32 32 H 1.09008 * 109.47095 * 299.99436 * 9 7 6 33 33 H 0.97005 * 120.00046 * 180.02562 * 13 12 10 34 34 H 1.07995 * 120.08929 * 0.02562 * 19 18 2 35 35 H 1.08001 * 119.90893 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.82874 * 179.97438 * 21 20 19 37 37 H 1.07999 * 119.91617 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.47296 * 269.72183 * 24 23 22 39 39 H 1.09000 * 109.47154 * 29.72080 * 24 23 22 40 40 H 1.09005 * 109.47612 * 149.72238 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1675 0.0000 4 6 3.6453 1.1676 0.0006 5 8 4.2538 0.1136 0.0015 6 7 4.3191 2.3348 0.0000 7 6 5.7841 2.3347 0.0012 8 1 6.1470 1.4935 0.5917 9 6 6.2952 2.2078 -1.4353 10 6 6.2860 3.6230 0.6008 11 1 5.5838 4.3672 0.9469 12 6 7.6415 3.8513 0.7087 13 7 8.4964 2.9449 0.2878 14 14 8.2634 5.4478 1.4526 15 1 7.7669 5.5709 2.8468 16 1 9.7485 5.4479 1.4537 17 1 7.7695 6.5942 0.6482 18 6 2.2430 -1.2749 0.0006 19 6 2.8658 -1.7264 1.1685 20 6 3.5538 -2.9212 1.1608 21 6 3.6294 -3.6730 0.0011 22 6 3.0155 -3.2331 -1.1585 23 6 2.3237 -2.0401 -1.1669 24 6 1.6510 -1.5657 -2.4291 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6410 2.1028 -0.0004 29 1 3.8342 3.1748 -0.0011 30 1 5.9324 3.0490 -2.0258 31 1 7.3852 2.2082 -1.4345 32 1 5.9322 1.2759 -1.8691 33 1 9.4500 3.1053 0.3640 34 1 2.8081 -1.1407 2.0741 35 1 4.0356 -3.2710 2.0619 36 1 4.1701 -4.6079 0.0012 37 1 3.0786 -3.8255 -2.0594 38 1 2.3456 -0.9514 -3.0021 39 1 1.3499 -2.4266 -3.0260 40 1 0.7710 -0.9759 -2.1724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136736836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:40:13 Heat of formation + Delta-G solvation = -6.569862 kcal Electronic energy + Delta-G solvation = -20907.736052 eV Core-core repulsion = 17880.288871 eV Total energy + Delta-G solvation = -3027.447181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.60761 -38.24566 -35.17477 -34.30907 -32.30039 -32.29448 -29.91417 -29.14245 -27.43194 -26.56482 -25.20592 -22.97039 -21.69193 -20.99819 -19.57215 -18.66147 -17.22431 -15.85452 -15.67537 -15.19702 -15.13473 -14.59095 -14.03738 -13.85446 -13.65106 -13.30312 -13.26634 -12.91548 -12.80670 -12.37887 -12.22503 -12.10722 -11.98002 -11.60696 -11.59002 -11.05079 -10.93513 -10.80359 -10.69012 -10.60561 -10.27977 -10.19457 -9.21109 -9.00152 -8.88695 -8.51242 -8.31886 -7.88732 -7.75226 -6.08577 -4.17743 1.44582 1.77986 1.90480 3.27238 3.32317 3.33652 4.09153 4.11524 4.22742 4.45612 4.77797 5.12207 5.12370 5.23207 5.28684 5.34936 5.40900 5.49038 5.52645 5.68885 5.76329 5.82314 5.85143 5.95725 6.03274 6.25286 6.44406 6.47861 6.60368 6.82324 6.88694 6.90159 6.94470 7.03311 7.21728 7.38821 7.54965 7.64320 7.76252 7.98214 8.20276 8.76904 8.85273 9.26225 9.50556 10.97318 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.004604 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.329723 B = 6080.325565 C = 6487.580612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.023 4.023 3 C -0.195 4.195 4 C 0.522 3.478 5 O -0.537 6.537 6 N -0.706 5.706 7 C 0.267 3.733 8 H 0.048 0.952 9 C -0.145 4.145 10 C -0.533 4.533 11 H 0.060 0.940 12 C 0.066 3.934 13 N -0.884 5.884 14 Si 0.901 3.099 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.023 4.023 19 C -0.068 4.068 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.076 4.076 24 C -0.114 4.114 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.124 0.876 29 H 0.387 0.613 30 H 0.024 0.976 31 H 0.088 0.912 32 H 0.014 0.986 33 H 0.264 0.736 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.479 -7.817 -1.838 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.025 4.025 3 C -0.216 4.216 4 C 0.309 3.691 5 O -0.417 6.417 6 N -0.354 5.354 7 C 0.165 3.835 8 H 0.065 0.935 9 C -0.204 4.204 10 C -0.572 4.572 11 H 0.078 0.922 12 C -0.137 4.137 13 N -0.521 5.521 14 Si 0.728 3.272 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.202 1.202 18 C -0.023 4.023 19 C -0.086 4.086 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.076 4.076 24 C -0.170 4.170 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.142 0.858 29 H 0.218 0.782 30 H 0.043 0.957 31 H 0.107 0.893 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.782 -8.579 -1.858 17.192 hybrid contribution 0.404 1.502 0.396 1.605 sum -14.378 -7.077 -1.461 16.092 Atomic orbital electron populations 1.20930 0.90800 1.02944 1.02727 1.20949 0.94972 0.92220 0.94404 1.23137 0.94909 0.97668 1.05905 1.18335 0.87487 0.84927 0.78360 1.90847 1.69940 1.30504 1.50424 1.46457 1.10056 1.06697 1.72165 1.18675 0.73220 0.97831 0.93801 0.93459 1.22055 1.04251 0.96565 0.97487 1.21204 0.92039 1.02528 1.41410 0.92231 1.24887 0.96622 0.96990 0.95215 1.69901 1.02346 1.33964 1.45929 0.86522 0.77687 0.83287 0.79660 1.20207 1.21139 1.20190 1.18437 0.97601 0.92707 0.93598 1.20937 0.95500 0.95130 0.97024 1.20874 0.99629 0.95467 0.98118 1.21019 0.99874 0.99796 0.93180 1.20745 0.99226 0.96402 0.97825 1.19753 0.99019 0.94594 0.94235 1.20803 1.00114 1.01140 0.94967 0.90592 0.91072 0.91110 0.85773 0.78151 0.95656 0.89302 0.96711 0.92582 0.86975 0.86695 0.86845 0.86770 0.91332 0.92035 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.31 36.00 0.34 -0.81 16 2 C -0.02 -0.33 4.40 -102.20 -0.45 -0.78 16 3 C -0.20 -3.03 9.69 -37.50 -0.36 -3.39 16 4 C 0.52 10.77 7.65 -12.96 -0.10 10.67 16 5 O -0.54 -12.83 12.48 5.19 0.06 -12.76 16 6 N -0.71 -15.25 5.06 -56.32 -0.29 -15.53 16 7 C 0.27 6.97 2.56 -69.08 -0.18 6.80 16 8 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 9 C -0.14 -3.73 9.26 37.15 0.34 -3.39 16 10 C -0.53 -14.44 8.73 -34.44 -0.30 -14.74 16 11 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 12 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 13 N -0.88 -25.39 11.32 55.43 0.63 -24.76 16 14 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 C -0.02 -0.38 3.34 -105.06 -0.35 -0.73 16 19 C -0.07 -1.13 7.95 -39.11 -0.31 -1.44 16 20 C -0.12 -1.93 10.03 -39.65 -0.40 -2.32 16 21 C -0.12 -1.78 10.04 -39.46 -0.40 -2.18 16 22 C -0.12 -1.82 9.69 -39.65 -0.38 -2.21 16 23 C -0.08 -1.16 5.92 -104.15 -0.62 -1.78 16 24 C -0.11 -1.41 9.62 36.00 0.35 -1.07 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 27 H 0.07 0.64 7.17 -51.93 -0.37 0.26 16 28 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.39 7.25 8.52 -40.82 -0.35 6.90 16 30 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 32 H 0.01 0.36 8.14 -51.92 -0.42 -0.07 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.06 0.72 5.54 -51.93 -0.29 0.43 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -31.81 333.14 -8.41 -40.22 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.90 Total: 7.55 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.91 Total: -15.64 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.34 Total: -40.30 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.06 Total: -12.76 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.81 -8.41 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136736836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.654 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds