Wall clock time and date at job start Thu Apr 9 2020 13:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34814 * 119.99813 * 2 1 4 4 C 1.46426 * 119.99892 * 179.97438 * 3 2 1 5 5 O 1.21701 * 120.00028 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99912 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99523 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47266 * 324.99728 * 7 6 4 9 9 C 1.52993 * 109.47156 * 85.00378 * 7 6 4 10 10 C 1.50703 * 109.46585 * 204.99725 * 7 6 4 11 11 H 1.08003 * 120.00123 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99923 * 179.97438 * 10 7 6 13 13 N 1.31510 * 119.99770 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 119.99865 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.47429 * 59.99974 * 14 12 10 16 16 H 1.48507 * 109.47055 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47098 * 299.99736 * 14 12 10 18 18 C 1.47208 * 120.00085 * 179.97438 * 2 1 3 19 19 C 1.39855 * 120.17108 * 254.97964 * 18 2 1 20 20 C 1.37874 * 119.82136 * 180.02562 * 19 18 2 21 21 C 1.38419 * 120.17575 * 0.02562 * 20 19 18 22 22 C 1.38382 * 120.34449 * 359.95831 * 21 20 19 23 23 C 1.37912 * 120.17243 * 0.04359 * 22 21 20 24 24 C 1.50690 * 120.09005 * 180.25520 * 23 22 21 25 25 H 1.08999 * 109.47359 * 270.00078 * 1 2 3 26 26 H 1.08999 * 109.47352 * 30.00745 * 1 2 3 27 27 H 1.09005 * 109.46904 * 150.00036 * 1 2 3 28 28 H 1.07998 * 119.99975 * 359.97438 * 3 2 1 29 29 H 0.96991 * 120.00147 * 359.97438 * 6 4 3 30 30 H 1.08999 * 109.47563 * 59.99533 * 9 7 6 31 31 H 1.08998 * 109.47124 * 179.97438 * 9 7 6 32 32 H 1.09008 * 109.47095 * 299.99436 * 9 7 6 33 33 H 0.97005 * 120.00046 * 180.02562 * 13 12 10 34 34 H 1.07995 * 120.08929 * 0.02562 * 19 18 2 35 35 H 1.08001 * 119.90893 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.82874 * 179.97438 * 21 20 19 37 37 H 1.07999 * 119.91617 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.47296 * 269.72183 * 24 23 22 39 39 H 1.09000 * 109.47154 * 29.72080 * 24 23 22 40 40 H 1.09005 * 109.47612 * 149.72238 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1675 0.0000 4 6 3.6453 1.1676 0.0006 5 8 4.2538 0.1136 0.0015 6 7 4.3191 2.3348 0.0000 7 6 5.7841 2.3347 0.0012 8 1 6.1470 1.4935 0.5917 9 6 6.2952 2.2078 -1.4353 10 6 6.2860 3.6230 0.6008 11 1 5.5838 4.3672 0.9469 12 6 7.6415 3.8513 0.7087 13 7 8.4964 2.9449 0.2878 14 14 8.2634 5.4478 1.4526 15 1 7.7669 5.5709 2.8468 16 1 9.7485 5.4479 1.4537 17 1 7.7695 6.5942 0.6482 18 6 2.2430 -1.2749 0.0006 19 6 2.8658 -1.7264 1.1685 20 6 3.5538 -2.9212 1.1608 21 6 3.6294 -3.6730 0.0011 22 6 3.0155 -3.2331 -1.1585 23 6 2.3237 -2.0401 -1.1669 24 6 1.6510 -1.5657 -2.4291 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6410 2.1028 -0.0004 29 1 3.8342 3.1748 -0.0011 30 1 5.9324 3.0490 -2.0258 31 1 7.3852 2.2082 -1.4345 32 1 5.9322 1.2759 -1.8691 33 1 9.4500 3.1053 0.3640 34 1 2.8081 -1.1407 2.0741 35 1 4.0356 -3.2710 2.0619 36 1 4.1701 -4.6079 0.0012 37 1 3.0786 -3.8255 -2.0594 38 1 2.3456 -0.9514 -3.0021 39 1 1.3499 -2.4266 -3.0260 40 1 0.7710 -0.9759 -2.1724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136736836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:40:13 Heat of formation + Delta-G solvation = -25.184434 kcal Electronic energy + Delta-G solvation = -20908.543240 eV Core-core repulsion = 17880.288871 eV Total energy + Delta-G solvation = -3028.254369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95438 -39.70909 -36.81607 -35.75232 -34.26124 -33.41313 -31.38626 -30.65181 -28.61216 -27.68488 -27.33400 -24.21922 -23.29623 -22.24404 -21.34128 -20.05526 -18.79921 -17.62373 -17.20615 -16.76314 -16.31361 -16.13139 -15.57257 -15.21701 -15.06065 -14.74485 -14.39389 -14.17789 -13.99314 -13.84310 -13.71619 -13.40993 -13.03569 -12.94890 -12.90845 -12.83869 -12.72891 -12.70337 -12.27386 -12.15273 -11.93511 -11.68691 -11.11880 -10.74772 -10.57727 -10.13787 -9.63144 -9.45437 -9.14605 -8.17730 -6.35654 0.23560 0.58836 0.71153 1.43502 1.46056 1.53900 2.36754 2.56524 2.79156 2.92647 3.12457 3.71536 4.00233 4.04138 4.13829 4.23394 4.44390 4.48030 4.60558 4.68828 4.73252 4.80532 4.81818 4.85572 4.90955 4.94802 5.07909 5.10844 5.15235 5.34073 5.36534 5.42533 5.54461 5.63122 5.66507 5.70899 5.73573 5.76167 5.96734 6.10964 6.24231 6.72988 7.09329 7.32957 7.68352 8.88422 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.004604 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.329723 B = 6080.325565 C = 6487.580612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.001 3.999 3 C -0.217 4.217 4 C 0.515 3.485 5 O -0.578 6.578 6 N -0.707 5.707 7 C 0.276 3.724 8 H -0.006 1.006 9 C -0.129 4.129 10 C -0.548 4.548 11 H 0.072 0.928 12 C 0.013 3.987 13 N -0.919 5.919 14 Si 0.974 3.026 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.263 1.263 18 C -0.045 4.045 19 C -0.093 4.093 20 C -0.141 4.141 21 C -0.130 4.130 22 C -0.134 4.134 23 C -0.091 4.091 24 C -0.111 4.111 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.162 0.838 29 H 0.402 0.598 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.007 0.993 33 H 0.265 0.735 34 H 0.104 0.896 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.054 0.946 39 H 0.085 0.915 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.729 -6.805 -2.272 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.001 4.001 3 C -0.237 4.237 4 C 0.305 3.695 5 O -0.461 6.461 6 N -0.355 5.355 7 C 0.172 3.828 8 H 0.012 0.988 9 C -0.188 4.188 10 C -0.586 4.586 11 H 0.090 0.910 12 C -0.187 4.187 13 N -0.557 5.557 14 Si 0.798 3.202 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.188 1.188 18 C -0.045 4.045 19 C -0.111 4.111 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.091 4.091 24 C -0.167 4.167 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.179 0.821 29 H 0.237 0.763 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.026 0.974 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.080 -7.551 -2.294 18.815 hybrid contribution 1.091 1.025 0.537 1.590 sum -15.989 -6.526 -1.757 17.358 Atomic orbital electron populations 1.21057 0.87017 1.04768 1.04285 1.21421 0.97317 0.90703 0.90659 1.23012 0.91474 0.99961 1.09250 1.19184 0.89737 0.83749 0.76810 1.90827 1.71433 1.31777 1.52033 1.46211 1.08253 1.08118 1.72940 1.18223 0.76027 0.95722 0.92854 0.98817 1.21858 1.02588 0.96669 0.97698 1.21538 0.92666 1.02859 1.41526 0.90982 1.25832 0.96840 1.00521 0.95480 1.70061 1.02604 1.36081 1.46986 0.85379 0.76860 0.79020 0.78955 1.19567 1.21124 1.18767 1.18808 0.98065 0.93855 0.93744 1.21064 0.96762 0.95850 0.97425 1.21152 0.99877 0.95667 0.99231 1.21367 0.99895 1.00625 0.92936 1.21162 0.98676 0.96687 0.98688 1.20185 0.99147 0.94739 0.95040 1.20843 1.00067 1.02131 0.93700 0.88922 0.88517 0.89991 0.82054 0.76343 0.94297 0.91693 0.97350 0.92589 0.87818 0.85683 0.84555 0.84361 0.92761 0.89661 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 9.31 71.23 0.66 -1.14 16 2 C 0.00 0.03 4.40 -18.29 -0.08 -0.05 16 3 C -0.22 -6.37 9.69 23.62 0.23 -6.14 16 4 C 0.52 21.51 7.65 86.37 0.66 22.17 16 5 O -0.58 -28.70 12.48 -4.35 -0.05 -28.76 16 6 N -0.71 -30.77 5.06 -450.33 -2.28 -33.05 16 7 C 0.28 14.87 2.56 44.24 0.11 14.98 16 8 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 9 C -0.13 -6.86 9.26 71.98 0.67 -6.20 16 10 C -0.55 -29.85 8.73 25.60 0.22 -29.63 16 11 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 12 C 0.01 0.72 5.30 84.66 0.45 1.17 16 13 N -0.92 -54.12 11.32 21.45 0.24 -53.88 16 14 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 18 C -0.04 -1.42 3.34 -20.15 -0.07 -1.48 16 19 C -0.09 -3.19 7.95 22.57 0.18 -3.02 16 20 C -0.14 -4.56 10.03 22.23 0.22 -4.34 16 21 C -0.13 -3.83 10.04 22.35 0.22 -3.60 16 22 C -0.13 -3.84 9.69 22.23 0.22 -3.62 16 23 C -0.09 -2.69 5.92 -19.56 -0.12 -2.81 16 24 C -0.11 -2.53 9.62 71.23 0.69 -1.84 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.10 1.09 8.08 -2.39 -0.02 1.08 16 27 H 0.08 1.15 7.17 -2.38 -0.02 1.13 16 28 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.40 14.76 8.52 -92.72 -0.79 13.97 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 3.75 6.07 -2.39 -0.01 3.74 16 32 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 34 H 0.10 3.57 8.06 -2.91 -0.02 3.54 16 35 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 36 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 40 H 0.08 1.56 5.54 -2.38 -0.01 1.54 16 Total: -1.00 -71.85 333.14 4.44 -67.40 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.24 Total: 29.06 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 4.27 Total: -25.55 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -2.04 Total: -86.93 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -71.85 4.44 -67.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136736836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.219 kcal (2) G-P(sol) polarization free energy of solvation -71.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds