Wall clock time and date at job start Thu Apr 9 2020 13:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.47250 * 119.95294 * 2 1 4 4 C 1.53103 * 108.53693 * 250.68184 * 3 2 1 5 5 N 1.45561 * 110.84510 * 274.25034 * 4 3 2 6 6 C 1.38814 * 111.00234 * 300.54627 * 5 4 3 7 7 C 1.39798 * 119.58809 * 166.51884 * 6 5 4 8 8 C 1.38592 * 119.49296 * 180.24974 * 7 6 5 9 9 C 1.38386 * 118.68041 * 359.48340 * 8 7 6 10 10 C 1.40545 * 119.15028 * 0.25079 * 9 8 7 11 11 C 1.41321 * 119.78771 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99450 * 0.02562 * 11 10 9 13 13 C 1.40021 * 120.00335 * 179.97438 * 11 10 9 14 14 N 1.30747 * 119.99991 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00080 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47121 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47107 * 119.99816 * 15 13 11 18 18 H 1.48496 * 109.47206 * 239.99951 * 15 13 11 19 19 N 1.31960 * 119.58795 * 346.24034 * 6 5 4 20 20 C 1.45586 * 116.01115 * 68.46259 * 5 4 3 21 21 C 1.53136 * 110.68846 * 291.77488 * 20 5 4 22 22 C 1.33632 * 119.94533 * 179.97438 * 2 1 3 23 23 O 1.21281 * 120.05242 * 359.72539 * 22 2 1 24 24 H 1.08997 * 109.47723 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47649 * 300.02673 * 1 2 3 26 26 H 1.08996 * 109.47141 * 60.02360 * 1 2 3 27 27 H 1.09001 * 109.61991 * 10.40316 * 3 2 1 28 28 H 1.09001 * 109.63059 * 130.77081 * 3 2 1 29 29 H 1.09006 * 109.20094 * 153.90537 * 4 3 2 30 30 H 1.09000 * 109.21295 * 34.60781 * 4 3 2 31 31 H 1.08003 * 120.25089 * 0.02562 * 7 6 5 32 32 H 1.08001 * 120.65843 * 179.75716 * 8 7 6 33 33 H 1.08004 * 120.42530 * 180.27153 * 9 8 7 34 34 H 0.96997 * 119.99935 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.23476 * 52.09175 * 20 5 4 36 36 H 1.09008 * 109.23103 * 171.46646 * 20 5 4 37 37 H 1.09003 * 109.68577 * 203.86963 * 21 20 5 38 38 H 1.09002 * 109.68558 * 324.38918 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2001 1.2758 0.0000 4 6 2.8592 1.4578 -1.3699 5 7 4.1529 0.7920 -1.4148 6 6 5.0076 1.2998 -0.4460 7 6 6.1851 0.6131 -0.1359 8 6 7.0345 1.1191 0.8353 9 6 6.6929 2.3031 1.4649 10 6 5.4981 2.9498 1.1051 11 6 5.1359 4.1594 1.7398 12 1 5.7767 4.5841 2.4984 13 6 3.9468 4.8078 1.3845 14 7 3.1717 4.2944 0.4652 15 14 3.4684 6.4070 2.2230 16 1 4.5079 6.7746 3.2178 17 1 3.3539 7.4838 1.2067 18 1 2.1635 6.2345 2.9105 19 7 4.7012 2.4276 0.1668 20 6 4.1239 -0.6630 -1.3742 21 6 3.6469 -1.1566 -0.0053 22 6 2.1320 -1.1579 0.0005 23 8 1.5255 -2.2082 0.0060 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5143 0.8898 26 1 -0.3633 0.5134 -0.8902 27 1 1.5079 2.0972 0.1854 28 1 2.9639 1.2584 0.7775 29 1 2.9967 2.5218 -1.5631 30 1 2.2118 1.0355 -2.1384 31 1 6.4292 -0.3067 -0.6467 32 1 7.9471 0.6019 1.0925 33 1 7.3364 2.7250 2.2228 34 1 2.3478 4.7434 0.2193 35 1 3.4460 -1.0302 -2.1446 36 1 5.1258 -1.0475 -1.5655 37 1 4.0156 -2.1674 0.1693 38 1 4.0171 -0.4910 0.7744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330692792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:28:26 Heat of formation + Delta-G solvation = 27.895303 kcal Electronic energy + Delta-G solvation = -22457.377474 eV Core-core repulsion = 19300.572993 eV Total energy + Delta-G solvation = -3156.804481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.50298 -38.64444 -36.51599 -34.97116 -33.51515 -31.63229 -30.23174 -29.61231 -28.49648 -25.90720 -25.38020 -23.80871 -22.69362 -21.24835 -19.70097 -18.51223 -17.67384 -16.77756 -16.49908 -15.61240 -15.10191 -15.02649 -14.86423 -14.41012 -13.64065 -13.45949 -13.27614 -13.04033 -12.75270 -12.45669 -12.20266 -12.17875 -11.76623 -11.64782 -11.29549 -11.22710 -11.14160 -10.89693 -10.76800 -10.72415 -10.44400 -10.05893 -9.62473 -9.39840 -9.00611 -8.42415 -8.04093 -7.70161 -6.91049 -6.54421 -4.62623 2.63294 2.89615 2.97392 3.03064 3.06311 3.12199 3.41333 3.85909 4.33824 4.66811 4.78445 5.31851 5.37652 5.45336 5.59769 5.66410 5.74722 5.78562 5.87429 5.91744 5.96373 5.99490 6.09650 6.23880 6.43472 6.55534 6.58794 6.71061 6.76297 6.81228 7.01770 7.05676 7.35912 7.57909 7.69411 7.72373 7.79946 8.11752 8.24604 8.48676 8.60037 8.87817 9.96156 10.17914 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.007849 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.795025 B = 3566.288947 C = 4651.186909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.616 5.616 3 C 0.097 3.903 4 C 0.073 3.927 5 N -0.496 5.496 6 C 0.329 3.671 7 C -0.336 4.336 8 C -0.041 4.041 9 C -0.297 4.297 10 C 0.277 3.723 11 C -0.428 4.428 12 H 0.083 0.917 13 C 0.075 3.925 14 N -0.719 5.719 15 Si 0.905 3.095 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.274 1.274 19 N -0.508 5.508 20 C 0.083 3.917 21 C -0.172 4.172 22 C 0.515 3.485 23 O -0.567 6.567 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.270 0.730 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.918 -2.854 -1.643 4.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.349 5.349 3 C -0.025 4.025 4 C -0.054 4.054 5 N -0.211 5.211 6 C 0.092 3.908 7 C -0.361 4.361 8 C -0.065 4.065 9 C -0.320 4.320 10 C 0.151 3.849 11 C -0.459 4.459 12 H 0.101 0.899 13 C -0.150 4.150 14 N -0.341 5.341 15 Si 0.729 3.271 16 H -0.185 1.185 17 H -0.199 1.199 18 H -0.199 1.199 19 N -0.227 5.227 20 C -0.045 4.045 21 C -0.214 4.214 22 C 0.304 3.696 23 O -0.448 6.448 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.071 -2.795 -2.429 5.504 hybrid contribution 0.355 0.272 1.225 1.304 sum -3.716 -2.524 -1.204 4.651 Atomic orbital electron populations 1.21630 0.80336 1.03386 1.01053 1.48201 1.06899 1.07654 1.72135 1.22579 0.96887 0.82696 1.00378 1.21993 0.86702 1.01913 0.94815 1.56904 1.12798 1.05010 1.46424 1.19679 0.90354 0.92035 0.88778 1.20841 1.00517 1.05327 1.09409 1.20698 0.96616 0.94809 0.94395 1.21639 1.01971 1.00143 1.08235 1.18309 0.86881 0.91751 0.87979 1.19618 1.04370 1.03806 1.18146 0.89879 1.25980 0.96067 0.98641 0.94291 1.70090 1.08345 1.34835 1.20802 0.86313 0.79224 0.81548 0.80003 1.18530 1.19886 1.19939 1.68609 1.32588 1.10067 1.11412 1.21747 1.02523 0.85937 0.94292 1.22722 0.91811 1.04963 1.01855 1.20691 0.90660 0.83193 0.75096 1.90626 1.70710 1.31532 1.51900 0.90103 0.92534 0.92465 0.89149 0.88509 0.86716 0.92497 0.88451 0.88636 0.88534 0.91906 0.90789 0.88938 0.88421 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.13 10.61 59.84 0.64 1.76 16 2 N -0.62 -10.55 2.88 -180.89 -0.52 -11.07 16 3 C 0.10 1.77 5.17 -3.58 -0.02 1.75 16 4 C 0.07 1.34 5.27 -4.49 -0.02 1.31 16 5 N -0.50 -9.39 4.63 -175.12 -0.81 -10.20 16 6 C 0.33 7.13 4.61 -155.33 -0.72 6.41 16 7 C -0.34 -6.97 8.43 -38.87 -0.33 -7.30 16 8 C -0.04 -0.86 10.15 -39.40 -0.40 -1.26 16 9 C -0.30 -6.85 9.83 -38.66 -0.38 -7.23 16 10 C 0.28 6.90 6.55 -85.00 -0.56 6.34 16 11 C -0.43 -10.46 9.14 -37.74 -0.34 -10.80 16 12 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 13 C 0.07 1.71 5.50 -17.35 -0.10 1.61 16 14 N -0.72 -16.27 11.01 55.55 0.61 -15.66 16 15 Si 0.90 17.19 29.56 -169.99 -5.02 12.17 16 16 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 17 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 18 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 19 N -0.51 -12.08 4.68 -10.33 -0.05 -12.13 16 20 C 0.08 1.35 5.17 -4.46 -0.02 1.33 16 21 C -0.17 -2.92 5.23 -27.42 -0.14 -3.06 16 22 C 0.51 9.49 6.82 -11.10 -0.08 9.41 16 23 O -0.57 -11.74 16.40 5.56 0.09 -11.65 16 24 H 0.08 1.20 6.88 -51.93 -0.36 0.85 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 1.62 7.96 -51.93 -0.41 1.21 16 28 H 0.10 2.08 4.92 -51.93 -0.26 1.83 16 29 H 0.11 2.33 7.51 -51.93 -0.39 1.94 16 30 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 31 H 0.10 1.81 6.20 -52.48 -0.33 1.48 16 32 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 34 H 0.27 5.56 8.29 -40.82 -0.34 5.22 16 35 H 0.07 1.13 7.87 -51.93 -0.41 0.73 16 36 H 0.09 1.40 6.26 -51.92 -0.32 1.07 16 37 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.10 1.88 5.42 -51.93 -0.28 1.60 16 LS Contribution 300.68 15.07 4.53 4.53 Total: -1.00 -26.76 300.68 -8.47 -35.24 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.83 Total: 8.50 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -2.47 Total: 0.28 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.77 Total: -49.06 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.02 Total: 12.17 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.76 -8.47 -35.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330692792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.132 kcal (2) G-P(sol) polarization free energy of solvation -26.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds