Wall clock time and date at job start Thu Apr 9 2020 13:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 110.06911 * 2 1 4 4 N 1.47908 * 109.91362 * 238.79770 * 2 1 3 5 5 C 1.48531 * 105.81914 * 215.31563 * 4 2 1 6 6 C 1.54938 * 103.22888 * 39.21054 * 5 4 2 7 7 C 1.53989 * 109.91903 * 121.21254 * 2 1 3 8 8 H 1.09002 * 110.30500 * 239.59196 * 7 2 1 9 9 C 1.50699 * 110.31117 * 1.65566 * 7 2 1 10 10 O 1.21273 * 120.00121 * 93.54996 * 9 7 2 11 11 N 1.34779 * 119.99889 * 273.55672 * 9 7 2 12 12 C 1.39276 * 119.99874 * 185.32104 * 11 9 7 13 13 C 1.39668 * 119.57168 * 174.19558 * 12 11 9 14 14 C 1.38660 * 119.49447 * 179.97438 * 13 12 11 15 15 C 1.38348 * 118.66685 * 0.27079 * 14 13 12 16 16 C 1.40583 * 119.12729 * 359.44358 * 15 14 13 17 17 C 1.41344 * 119.78725 * 180.29453 * 16 15 14 18 18 H 1.08008 * 119.99744 * 0.27208 * 17 16 15 19 19 C 1.40019 * 119.99983 * 180.26895 * 17 16 15 20 20 N 1.30739 * 120.00324 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00010 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46904 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47302 * 120.00269 * 21 19 17 24 24 H 1.48506 * 109.47063 * 240.00494 * 21 19 17 25 25 N 1.31902 * 119.57342 * 354.16580 * 12 11 9 26 26 H 1.09008 * 109.46816 * 294.59868 * 1 2 3 27 27 H 1.08994 * 109.47125 * 54.59631 * 1 2 3 28 28 H 1.08997 * 109.47420 * 174.60002 * 1 2 3 29 29 H 1.00899 * 110.99621 * 335.82908 * 4 2 1 30 30 H 1.09006 * 110.66561 * 157.64144 * 5 4 2 31 31 H 1.08998 * 110.66673 * 280.60265 * 5 4 2 32 32 H 1.08996 * 110.72779 * 204.22881 * 6 5 4 33 33 H 1.08991 * 110.72777 * 80.94206 * 6 5 4 34 34 H 0.97003 * 120.00554 * 5.31290 * 11 9 7 35 35 H 1.07998 * 120.25548 * 359.97226 * 13 12 11 36 36 H 1.07993 * 120.66825 * 179.97438 * 14 13 12 37 37 H 1.07994 * 120.43646 * 179.69980 * 15 14 13 38 38 H 0.96999 * 120.00355 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0237 0.0000 4 7 2.0338 -0.7204 -1.1895 5 6 3.2681 -1.4185 -0.7474 6 6 2.9059 -1.9119 0.6760 7 6 2.0546 -0.7503 1.2382 8 1 2.6700 -0.0891 1.8485 9 6 0.9047 -1.2894 2.0493 10 8 0.5124 -2.4224 1.8667 11 7 0.3120 -0.5125 2.9776 12 6 -0.6756 -1.0443 3.8032 13 6 -1.1974 -0.2690 4.8411 14 6 -2.1810 -0.7998 5.6617 15 6 -2.6138 -2.0929 5.4280 16 6 -2.0534 -2.8201 4.3633 17 6 -2.4897 -4.1401 4.1081 18 1 -3.2544 -4.5853 4.7274 19 6 -1.9307 -4.8704 3.0523 20 7 -1.0047 -4.3317 2.3029 21 14 -2.5067 -6.6152 2.7155 22 1 -3.5546 -6.9890 3.6991 23 1 -3.0663 -6.6953 1.3422 24 1 -1.3577 -7.5480 2.8371 25 7 -1.1064 -2.2734 3.5943 26 1 -0.3633 0.4278 0.9345 27 1 -0.3633 0.5953 -0.8376 28 1 -0.3634 -1.0231 -0.0967 29 1 1.3489 -1.3781 -1.5308 30 1 3.4887 -2.2616 -1.4022 31 1 4.1103 -0.7274 -0.7152 32 1 3.8052 -2.0559 1.2748 33 1 2.3214 -2.8306 0.6287 34 1 0.5734 0.4170 3.0708 35 1 -0.8376 0.7363 5.0033 36 1 -2.5975 -0.2173 6.4701 37 1 -3.3750 -2.5364 6.0526 38 1 -0.6172 -4.8377 1.5718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330991857.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:28:37 Heat of formation + Delta-G solvation = 3.278498 kcal Electronic energy + Delta-G solvation = -21895.108252 eV Core-core repulsion = 18737.236306 eV Total energy + Delta-G solvation = -3157.871946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51009 -39.94713 -38.27790 -35.91417 -34.86004 -32.44447 -32.21680 -31.58151 -30.42068 -27.51521 -26.64201 -24.31946 -23.24135 -22.55650 -22.00075 -20.28230 -19.35079 -17.97153 -17.66337 -16.90274 -16.63601 -16.43684 -16.27185 -15.55790 -15.42677 -15.31489 -14.81607 -14.55112 -14.10790 -13.77981 -13.45725 -13.29722 -12.91906 -12.81920 -12.72426 -12.56401 -12.49960 -12.33621 -12.24030 -11.81268 -11.76747 -11.69709 -11.47416 -10.86202 -10.57788 -9.89960 -9.65110 -9.06797 -8.80457 -8.06729 -6.43081 0.91176 1.24296 1.37392 1.48859 1.51537 2.15059 2.24075 2.34268 2.97790 3.22452 3.60540 3.77280 3.97646 4.05711 4.15269 4.34610 4.38166 4.45846 4.48677 4.56619 4.72177 4.75439 4.88430 4.95041 4.95666 5.03885 5.06349 5.08945 5.21776 5.29181 5.31243 5.67896 5.78554 5.86622 5.92197 6.15028 6.29219 6.37327 6.74931 6.85097 7.07957 7.73885 8.34455 8.54819 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.007167 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.348019 B = 3905.662643 C = 5215.828884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.094 3.906 3 H 0.118 0.882 4 N -0.670 5.670 5 C 0.051 3.949 6 C -0.144 4.144 7 C -0.130 4.130 8 H 0.119 0.881 9 C 0.477 3.523 10 O -0.458 6.458 11 N -0.656 5.656 12 C 0.350 3.650 13 C -0.348 4.348 14 C -0.035 4.035 15 C -0.332 4.332 16 C 0.236 3.764 17 C -0.466 4.466 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.688 5.688 21 Si 0.972 3.028 22 H -0.255 1.255 23 H -0.271 1.271 24 H -0.271 1.271 25 N -0.505 5.505 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.334 0.666 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.418 0.582 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.187 8.231 -5.052 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.016 4.016 3 H 0.135 0.865 4 N -0.297 5.297 5 C -0.078 4.078 6 C -0.184 4.184 7 C -0.153 4.153 8 H 0.138 0.862 9 C 0.262 3.738 10 O -0.325 6.325 11 N -0.305 5.305 12 C 0.111 3.889 13 C -0.373 4.373 14 C -0.059 4.059 15 C -0.355 4.355 16 C 0.111 3.889 17 C -0.497 4.497 18 H 0.102 0.898 19 C -0.213 4.213 20 N -0.307 5.307 21 Si 0.793 3.207 22 H -0.178 1.178 23 H -0.196 1.196 24 H -0.196 1.196 25 N -0.225 5.225 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.150 0.850 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.256 0.744 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.773 7.419 -6.463 13.182 hybrid contribution -1.134 -0.729 1.487 2.007 sum 7.639 6.690 -4.976 11.308 Atomic orbital electron populations 1.22140 0.95713 1.01058 1.02767 1.22294 0.93744 0.99179 0.86393 0.86474 1.63020 1.07748 1.29974 1.28988 1.23150 0.93838 0.98159 0.92629 1.23070 0.99349 0.97272 0.98691 1.22789 0.94979 0.99512 0.98064 0.86248 1.21308 0.85016 0.86803 0.80708 1.91125 1.60892 1.17930 1.62524 1.43543 1.37251 1.14689 1.35034 1.19173 0.89172 0.91370 0.89143 1.21002 1.09801 1.02478 1.04041 1.21028 0.94064 0.93924 0.96881 1.21799 1.09939 0.98092 1.05629 1.18885 0.88140 0.93795 0.88092 1.19904 1.19543 0.97223 1.13041 0.89840 1.26992 0.94969 1.03668 0.95679 1.70528 1.14835 1.35647 1.09663 0.85312 0.79048 0.77420 0.78882 1.17816 1.19568 1.19627 1.68676 1.15413 1.09153 1.29234 0.92143 0.90569 0.95335 0.85008 0.89871 0.88100 0.89705 0.92780 0.74447 0.85123 0.84686 0.87969 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 8.04 71.98 0.58 -4.01 16 2 C 0.09 2.25 4.02 45.06 0.18 2.43 16 3 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 4 N -0.67 -15.79 7.40 -480.20 -3.55 -19.34 16 5 C 0.05 1.06 7.55 86.65 0.65 1.72 16 6 C -0.14 -3.83 6.54 31.80 0.21 -3.63 16 7 C -0.13 -3.48 3.38 -10.66 -0.04 -3.52 16 8 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 9 C 0.48 18.53 4.81 87.66 0.42 18.96 16 10 O -0.46 -23.00 11.08 -3.01 -0.03 -23.03 16 11 N -0.66 -24.74 4.35 -308.37 -1.34 -26.08 16 12 C 0.35 16.88 7.43 133.25 0.99 17.87 16 13 C -0.35 -14.90 9.96 22.72 0.23 -14.67 16 14 C -0.03 -1.53 10.15 22.40 0.23 -1.30 16 15 C -0.33 -16.98 9.83 22.87 0.22 -16.76 16 16 C 0.24 13.79 6.55 40.20 0.26 14.05 16 17 C -0.47 -26.84 9.14 23.47 0.21 -26.63 16 18 H 0.08 4.54 7.85 -2.91 -0.02 4.51 16 19 C 0.01 0.68 5.50 85.29 0.47 1.14 16 20 N -0.69 -39.55 9.00 21.83 0.20 -39.35 16 21 Si 0.97 41.10 29.56 68.60 2.03 43.13 16 22 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 N -0.51 -28.99 5.74 -186.35 -1.07 -30.06 16 26 H 0.06 1.83 6.56 -2.38 -0.02 1.81 16 27 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.03 1.04 7.36 -2.39 -0.02 1.03 16 29 H 0.33 8.72 8.32 -89.69 -0.75 7.97 16 30 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.89 6.81 -2.39 -0.02 1.87 16 34 H 0.42 11.62 8.69 -92.71 -0.81 10.82 16 35 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 36 H 0.14 4.77 8.06 -2.91 -0.02 4.74 16 37 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 38 H 0.27 14.55 8.29 -92.71 -0.77 13.78 16 Total: -1.00 -72.36 308.24 0.39 -71.97 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: -0.46 Total: 37.12 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 4.62 Total: -14.35 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -5.77 Total: -114.83 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.03 Total: -23.03 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -72.36 0.39 -71.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330991857.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.252 kcal (2) G-P(sol) polarization free energy of solvation -72.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds