Wall clock time and date at job start Thu Apr 9 2020 13:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.46950 * 2 1 4 4 C 1.36885 * 126.39643 * 265.18561 * 3 2 1 5 5 C 1.34671 * 106.81663 * 180.25403 * 4 3 2 6 6 N 1.34126 * 108.02104 * 359.74300 * 5 4 3 7 7 C 1.30501 * 109.25544 * 359.97438 * 6 5 4 8 8 C 1.50697 * 125.64728 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47246 * 180.02562 * 8 7 6 10 10 C 1.47201 * 109.47217 * 300.02394 * 8 7 6 11 11 N 5.06743 * 120.83616 * 63.54042 * 2 1 3 12 12 C 1.50699 * 109.47410 * 60.02406 * 8 7 6 13 13 O 1.20764 * 119.99902 * 335.00111 * 12 8 7 14 14 C 1.50699 * 120.00156 * 154.99769 * 12 8 7 15 15 C 1.53006 * 109.46866 * 180.02562 * 14 12 8 16 16 C 1.52999 * 109.46623 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.46953 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00344 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46755 * 89.99832 * 21 19 17 23 23 H 1.48495 * 109.46931 * 209.99846 * 21 19 17 24 24 H 1.48500 * 109.46738 * 330.00088 * 21 19 17 25 25 H 1.08996 * 109.47109 * 60.00174 * 1 2 3 26 26 H 1.09001 * 109.47335 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47504 * 300.00243 * 1 2 3 28 28 H 1.08991 * 109.47169 * 239.99544 * 2 1 3 29 29 H 1.09004 * 109.46767 * 119.99911 * 2 1 3 30 30 H 1.07998 * 126.58977 * 359.97438 * 4 3 2 31 31 H 1.07997 * 125.98613 * 179.76181 * 5 4 3 32 32 H 1.08993 * 109.47512 * 60.00453 * 14 12 8 33 33 H 1.09000 * 109.47247 * 300.00162 * 14 12 8 34 34 H 1.09000 * 109.47050 * 299.99952 * 15 14 12 35 35 H 1.09001 * 109.46801 * 60.00064 * 15 14 12 36 36 H 1.09000 * 109.47486 * 299.99829 * 16 15 14 37 37 H 1.09001 * 109.47362 * 60.00551 * 16 15 14 38 38 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3762 2.1162 -1.0979 5 6 2.7687 3.3232 -0.6478 6 7 2.6483 3.3271 0.6881 7 6 2.1955 2.1685 1.0828 8 6 1.9233 1.7722 2.5109 9 1 1.5524 0.7476 2.5393 10 6 3.1676 1.8653 3.2918 11 7 4.1275 1.9387 3.8953 12 6 0.8898 2.6969 3.1007 13 8 0.7484 3.8091 2.6518 14 6 0.0327 2.2339 4.2505 15 6 -0.9264 3.3551 4.6555 16 6 -1.7969 2.8847 5.8224 17 6 -2.7412 3.9892 6.2219 18 1 -2.7225 4.9322 5.6957 19 6 -3.6289 3.7960 7.2589 20 7 -3.6520 2.6475 7.8993 21 14 -4.7989 5.1653 7.7545 22 1 -6.0604 5.0426 6.9807 23 1 -5.0961 5.0614 9.2057 24 1 -4.1700 6.4803 7.4708 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.3529 1.7892 -2.1270 31 1 3.1188 4.1441 -1.2558 32 1 0.6689 1.9760 5.0971 33 1 -0.5405 1.3579 3.9467 34 1 -0.3535 4.2313 4.9592 35 1 -1.5626 3.6125 3.8087 36 1 -2.3698 2.0087 5.5183 37 1 -1.1610 2.6269 6.6694 38 1 -4.2768 2.5113 8.6287 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346096638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:29:38 Heat of formation + Delta-G solvation = 42.232755 kcal Electronic energy + Delta-G solvation = -20406.124326 eV Core-core repulsion = 17249.941564 eV Total energy + Delta-G solvation = -3156.182762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.49277 -39.59028 -36.73135 -35.35701 -34.30162 -32.83261 -32.03448 -30.43311 -28.80052 -27.41697 -24.22193 -23.95309 -21.79799 -21.00292 -20.51023 -19.74899 -18.05320 -17.31031 -16.47338 -16.05309 -15.62337 -15.30972 -14.93190 -14.69843 -14.41086 -14.09780 -13.95503 -13.72606 -13.44623 -12.96521 -12.90728 -12.68265 -12.45912 -12.32105 -12.13575 -11.85298 -11.77346 -11.42524 -10.83238 -10.67066 -10.56888 -10.09484 -9.86113 -9.81660 -9.73662 -9.31675 -9.05548 -8.62982 -8.33880 -5.99516 -4.01081 1.62458 1.81517 2.18815 2.54968 2.64755 2.97957 3.33989 3.40168 3.44983 3.62581 3.90563 4.04153 4.17418 4.36176 4.48469 4.50678 4.69165 4.73393 5.10883 5.19362 5.23674 5.26910 5.36835 5.47883 5.57643 5.63870 5.67506 5.98239 6.18619 6.53162 6.62565 6.80122 6.82815 7.06870 7.25754 7.52699 7.67238 7.79244 7.89288 8.00504 8.43947 9.05869 9.63238 11.11882 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023746 B = 0.003561 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.845007 B = 7861.950082 C = 8046.607793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 N -0.449 5.449 4 C -0.045 4.045 5 C -0.026 4.026 6 N -0.448 5.448 7 C 0.200 3.800 8 C 0.049 3.951 9 H 0.147 0.853 10 C 0.223 3.777 11 N -0.395 5.395 12 C 0.361 3.639 13 O -0.395 6.395 14 C -0.163 4.163 15 C -0.103 4.103 16 C 0.021 3.979 17 C -0.519 4.519 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.178 0.822 31 H 0.172 0.828 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.215 -9.924 -19.138 23.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.030 4.030 3 N -0.132 5.132 4 C -0.178 4.178 5 C -0.175 4.175 6 N -0.166 5.166 7 C -0.063 4.063 8 C 0.025 3.975 9 H 0.164 0.836 10 C -0.097 4.097 11 N -0.071 5.071 12 C 0.228 3.772 13 O -0.262 6.262 14 C -0.200 4.200 15 C -0.140 4.140 16 C -0.016 4.016 17 C -0.558 4.558 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.195 0.805 31 H 0.190 0.810 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.640 -8.763 -17.826 23.023 hybrid contribution -1.219 -0.192 -0.608 1.375 sum 10.422 -8.955 -18.434 22.991 Atomic orbital electron populations 1.22225 0.93355 1.03733 1.03946 1.21999 0.96259 0.79693 1.05015 1.45448 1.48692 1.12576 1.06526 1.22746 1.08431 0.94131 0.92512 1.22389 1.06586 0.97508 0.91057 1.70295 1.15887 1.18203 1.12177 1.21784 1.07304 0.88467 0.88706 1.17634 0.89280 1.04661 0.85961 0.83593 1.27636 0.93780 0.94253 0.94015 1.81232 1.10114 1.07376 1.08380 1.24434 0.81477 0.87051 0.84196 1.90495 1.61335 1.19383 1.54958 1.22280 0.98922 1.02785 0.96049 1.21534 0.96507 0.95537 1.00453 1.19123 0.93941 0.96657 0.91910 1.21263 1.18337 1.00034 1.16132 0.92576 1.25007 0.97447 0.95624 0.96341 1.69954 1.37411 1.23528 1.22783 0.86602 0.81279 0.82604 0.77612 1.20672 1.21250 1.19810 0.91512 0.89992 0.91264 0.88431 0.88723 0.80497 0.81031 0.88374 0.88190 0.92577 0.92569 0.96470 0.96472 0.93042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.24 37.16 0.38 -0.49 16 2 C 0.09 0.44 6.41 -4.04 -0.03 0.42 16 3 N -0.45 -4.02 2.75 -113.91 -0.31 -4.33 16 4 C -0.05 -0.39 11.58 -16.56 -0.19 -0.58 16 5 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 6 N -0.45 -6.74 10.51 -10.82 -0.11 -6.85 16 7 C 0.20 2.46 6.07 -155.42 -0.94 1.52 16 8 C 0.05 0.55 2.83 -95.71 -0.27 0.27 16 9 H 0.15 0.91 6.85 -51.93 -0.36 0.56 16 10 C 0.22 2.99 14.61 -20.75 -0.30 2.69 16 11 N -0.40 -6.17 18.54 42.16 0.78 -5.39 16 12 C 0.36 5.17 6.22 -29.04 -0.18 4.99 16 13 O -0.40 -7.24 15.34 6.00 0.09 -7.14 16 14 C -0.16 -2.38 5.64 -27.88 -0.16 -2.54 16 15 C -0.10 -2.07 4.44 -26.73 -0.12 -2.19 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 21 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.27 8.13 -51.93 -0.42 -0.15 16 29 H 0.09 0.31 7.29 -51.93 -0.38 -0.07 16 30 H 0.18 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -36.63 338.36 -6.66 -43.29 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -5.34 Total: -5.97 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.57 Total: -9.54 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 1.09 Total: -42.47 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: 0.09 Total: -7.14 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.63 -6.66 -43.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346096638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.519 kcal (2) G-P(sol) polarization free energy of solvation -36.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds