Wall clock time and date at job start Thu Apr 9 2020 13:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 112.85017 * 2 1 4 4 C 1.53782 * 113.69443 * 131.27261 * 2 1 3 5 5 C 1.53778 * 87.08373 * 139.98899 * 4 2 1 6 6 C 1.53781 * 87.08291 * 334.56724 * 5 4 2 7 7 H 1.09000 * 113.69188 * 270.87280 * 6 5 4 8 8 N 1.46504 * 113.61395 * 139.97840 * 6 5 4 9 9 C 1.34775 * 119.99680 * 107.50367 * 8 6 5 10 10 O 1.21572 * 120.00302 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99790 * 179.97438 * 9 8 6 12 12 C 1.39239 * 120.00158 * 185.15872 * 11 9 8 13 13 C 1.39681 * 119.57880 * 174.66986 * 12 11 9 14 14 C 1.38644 * 119.49499 * 180.02562 * 13 12 11 15 15 C 1.38349 * 118.67544 * 359.97438 * 14 13 12 16 16 C 1.40575 * 119.13125 * 359.97438 * 15 14 13 17 17 C 1.41325 * 119.78884 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00229 * 0.02562 * 17 16 15 19 19 C 1.40031 * 119.99933 * 180.02562 * 17 16 15 20 20 N 1.30747 * 120.00150 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00166 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47216 * 179.97438 * 21 19 17 23 23 H 1.48506 * 109.47136 * 300.00159 * 21 19 17 24 24 H 1.48504 * 109.47002 * 59.99751 * 21 19 17 25 25 N 1.31909 * 119.57393 * 354.94201 * 12 11 9 26 26 H 1.08998 * 109.47193 * 191.19510 * 1 2 3 27 27 H 1.09001 * 109.47057 * 311.19180 * 1 2 3 28 28 H 1.09006 * 109.47372 * 71.19120 * 1 2 3 29 29 H 1.08998 * 113.61296 * 254.53966 * 4 2 1 30 30 H 1.09001 * 113.61066 * 25.43548 * 4 2 1 31 31 H 1.08997 * 113.61502 * 220.02178 * 5 4 2 32 32 H 1.08998 * 113.60958 * 89.11726 * 5 4 2 33 33 H 0.97001 * 119.99713 * 287.50660 * 8 6 5 34 34 H 0.97006 * 119.99904 * 5.15097 * 11 9 8 35 35 H 1.08001 * 120.25381 * 0.03992 * 13 12 11 36 36 H 1.08005 * 120.66477 * 180.02562 * 14 13 12 37 37 H 1.08003 * 120.43700 * 180.02562 * 15 14 13 38 38 H 0.96993 * 120.00155 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1479 -0.9289 1.0584 5 6 3.1936 -1.3119 -0.0021 6 6 2.1460 -0.9281 -1.0604 7 1 1.4944 -1.7522 -1.3508 8 7 2.7074 -0.2143 -2.2100 9 6 2.8150 -0.8351 -3.4015 10 8 2.4459 -1.9871 -3.5223 11 7 3.3310 -0.1783 -4.4593 12 6 3.3438 -0.7810 -5.7144 13 6 3.7769 -0.0526 -6.8247 14 6 3.7883 -0.6543 -8.0737 15 6 3.3676 -1.9678 -8.1817 16 6 2.9442 -2.6480 -7.0266 17 6 2.5110 -3.9899 -7.1210 18 1 2.5064 -4.4898 -8.0783 19 6 2.0878 -4.6714 -5.9733 20 7 2.0929 -4.0661 -4.8143 21 14 1.5160 -6.4453 -6.0979 22 1 1.1239 -6.9348 -4.7518 23 1 0.3498 -6.5263 -7.0137 24 1 2.6203 -7.2853 -6.6272 25 7 2.9415 -2.0310 -5.8404 26 1 -0.3633 -1.0081 0.1995 27 1 -0.3633 0.6768 0.7733 28 1 -0.3634 0.3313 -0.9728 29 1 2.5672 -0.3986 1.9134 30 1 1.4974 -1.7541 1.3483 31 1 3.4466 -2.3721 -0.0028 32 1 4.0717 -0.6661 -0.0026 33 1 3.0016 0.7050 -2.1136 34 1 3.6935 0.7144 -4.3462 35 1 4.1006 0.9715 -6.7111 36 1 4.1199 -0.1088 -8.9449 37 1 3.3652 -2.4645 -9.1408 38 1 1.7994 -4.5380 -4.0194 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352975823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:29:52 Heat of formation + Delta-G solvation = 25.756347 kcal Electronic energy + Delta-G solvation = -21244.892792 eV Core-core repulsion = 18087.995559 eV Total energy + Delta-G solvation = -3156.897233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.27694 -40.14574 -38.93717 -35.86714 -34.80930 -34.11828 -32.17650 -30.83914 -30.53294 -27.50482 -25.86287 -23.99111 -23.58566 -22.97351 -21.40161 -20.65269 -19.69271 -18.53372 -18.11792 -17.05893 -16.36273 -16.23084 -16.08799 -15.64997 -15.36177 -14.87965 -14.68145 -14.53935 -14.11148 -13.95026 -13.73216 -13.53034 -12.89454 -12.72453 -12.61051 -12.55421 -12.49610 -12.30162 -11.96796 -11.78025 -11.50795 -11.29248 -11.16739 -10.84370 -10.80018 -9.88094 -9.68531 -9.08128 -8.76033 -8.00377 -6.39790 0.98860 1.30339 1.38879 1.50763 1.54173 1.88595 2.27259 2.58672 3.05323 3.44837 3.56025 3.76125 3.96794 4.04562 4.10524 4.37051 4.54577 4.60205 4.70501 4.79487 4.86504 4.90877 4.95364 4.98204 5.02919 5.08551 5.12494 5.23194 5.29075 5.36224 5.50780 5.69453 5.86647 5.88885 5.94687 6.07399 6.34790 6.45007 6.83962 7.09272 7.31938 8.06725 8.40628 8.60051 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.006041 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.881114 B = 4633.608864 C = 6046.363915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.113 0.887 4 C -0.121 4.121 5 C -0.155 4.155 6 C 0.136 3.864 7 H 0.074 0.926 8 N -0.725 5.725 9 C 0.654 3.346 10 O -0.518 6.518 11 N -0.662 5.662 12 C 0.363 3.637 13 C -0.346 4.346 14 C -0.033 4.033 15 C -0.332 4.332 16 C 0.236 3.764 17 C -0.468 4.468 18 H 0.086 0.914 19 C 0.009 3.991 20 N -0.684 5.684 21 Si 0.973 3.027 22 H -0.275 1.275 23 H -0.260 1.260 24 H -0.260 1.260 25 N -0.507 5.507 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.404 0.596 34 H 0.417 0.583 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.111 9.688 11.764 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.131 0.869 4 C -0.158 4.158 5 C -0.194 4.194 6 C 0.030 3.970 7 H 0.093 0.907 8 N -0.384 5.384 9 C 0.353 3.647 10 O -0.385 6.385 11 N -0.313 5.313 12 C 0.123 3.877 13 C -0.372 4.372 14 C -0.058 4.058 15 C -0.355 4.355 16 C 0.111 3.889 17 C -0.499 4.499 18 H 0.104 0.896 19 C -0.217 4.217 20 N -0.303 5.303 21 Si 0.794 3.206 22 H -0.200 1.200 23 H -0.184 1.184 24 H -0.184 1.184 25 N -0.226 5.226 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.240 0.760 34 H 0.254 0.746 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.122 0.878 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.611 8.108 12.667 15.052 hybrid contribution 0.397 0.361 -0.987 1.123 sum -0.213 8.468 11.680 14.429 Atomic orbital electron populations 1.21720 0.94515 1.02037 1.01658 1.22963 0.96014 0.99276 0.94079 0.86946 1.22752 0.97317 0.99299 0.96465 1.23429 0.98379 1.01204 0.96411 1.22518 0.95803 0.95843 0.82846 0.90735 1.45056 1.68769 1.16770 1.07814 1.16844 0.80705 0.85888 0.81291 1.91365 1.50110 1.15024 1.82049 1.42433 1.63499 1.19817 1.05549 1.18885 0.93222 0.90987 0.84599 1.20918 1.22017 1.01788 0.92452 1.21021 0.94332 0.93610 0.96797 1.21802 1.17332 0.97733 0.98604 1.18890 0.89227 0.93909 0.86882 1.19869 1.38314 0.96009 0.95671 0.89632 1.27059 0.95776 1.03899 0.94935 1.70566 1.25290 1.35938 0.98521 0.85420 0.79506 0.77470 0.78224 1.19992 1.18429 1.18386 1.68670 1.21892 1.06820 1.25211 0.93144 0.90487 0.93872 0.88717 0.90001 0.93178 0.88920 0.75970 0.74621 0.85021 0.84444 0.87784 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.71 71.98 0.70 -2.00 16 2 C -0.10 -1.95 4.11 -10.27 -0.04 -1.99 16 3 H 0.11 1.63 8.12 -2.39 -0.02 1.62 16 4 C -0.12 -2.09 7.64 31.12 0.24 -1.85 16 5 C -0.16 -3.65 7.88 31.12 0.25 -3.40 16 6 C 0.14 3.81 3.80 45.52 0.17 3.98 16 7 H 0.07 2.72 7.42 -2.39 -0.02 2.70 16 8 N -0.73 -21.60 5.36 -455.29 -2.44 -24.04 16 9 C 0.65 27.92 8.52 179.05 1.53 29.45 16 10 O -0.52 -28.32 11.70 -3.94 -0.05 -28.36 16 11 N -0.66 -26.60 5.39 -322.13 -1.74 -28.34 16 12 C 0.36 18.21 7.43 133.26 0.99 19.20 16 13 C -0.35 -15.14 9.95 22.72 0.23 -14.91 16 14 C -0.03 -1.49 10.15 22.39 0.23 -1.26 16 15 C -0.33 -17.21 9.83 22.87 0.22 -16.99 16 16 C 0.24 14.10 6.55 40.19 0.26 14.36 16 17 C -0.47 -27.48 9.14 23.46 0.21 -27.26 16 18 H 0.09 4.69 7.85 -2.91 -0.02 4.66 16 19 C 0.01 0.51 5.50 85.29 0.47 0.97 16 20 N -0.68 -40.96 8.98 21.84 0.20 -40.76 16 21 Si 0.97 42.00 29.56 68.60 2.03 44.03 16 22 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 25 N -0.51 -30.16 5.73 -186.37 -1.07 -31.23 16 26 H 0.05 1.02 7.95 -2.39 -0.02 1.00 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.45 7.97 -2.39 -0.02 1.43 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.40 8.60 8.75 -92.71 -0.81 7.79 16 34 H 0.42 12.16 8.72 -92.70 -0.81 11.35 16 35 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.14 4.87 8.06 -2.91 -0.02 4.85 16 37 H 0.10 5.03 8.06 -2.91 -0.02 5.00 16 38 H 0.27 15.23 8.29 -92.71 -0.77 14.46 16 Total: -1.00 -77.26 318.19 1.85 -75.40 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: -0.53 Total: 35.02 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 5.45 Total: -1.71 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -5.05 Total: -124.38 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.05 Total: -28.36 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -77.26 1.85 -75.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352975823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.158 kcal (2) G-P(sol) polarization free energy of solvation -77.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds