Wall clock time and date at job start Thu Apr 9 2020 13:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38256 * 120.00035 * 2 1 4 4 C 1.38217 * 119.99714 * 180.02562 * 3 2 1 5 5 C 1.38254 * 120.00519 * 359.95518 * 4 3 2 6 6 C 1.38213 * 119.99650 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99736 * 179.97438 * 6 5 4 8 8 N 1.46894 * 112.85013 * 310.25464 * 7 6 5 9 9 C 1.46898 * 111.00075 * 305.41884 * 8 7 6 10 10 C 1.53000 * 109.47363 * 186.13318 * 9 8 7 11 11 H 1.09006 * 109.47336 * 59.99870 * 10 9 8 12 12 O 1.42908 * 109.46991 * 300.00196 * 10 9 8 13 13 C 1.50696 * 109.47507 * 180.02562 * 10 9 8 14 14 H 1.08007 * 119.99996 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00511 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00423 * 179.97438 * 15 13 10 17 17 Si 1.86800 * 119.99571 * 359.97438 * 15 13 10 18 18 H 1.48497 * 109.47498 * 90.00221 * 17 15 13 19 19 H 1.48513 * 109.47029 * 210.00050 * 17 15 13 20 20 H 1.48497 * 109.47159 * 329.99639 * 17 15 13 21 21 C 1.53786 * 113.61388 * 81.45404 * 7 6 5 22 22 C 1.53783 * 87.08090 * 139.98012 * 21 7 6 23 23 C 1.53784 * 87.17249 * 334.52496 * 22 21 7 24 24 C 1.38211 * 120.00119 * 180.22982 * 2 1 3 25 25 H 1.09007 * 109.46804 * 90.00131 * 1 2 3 26 26 H 1.08998 * 109.47162 * 209.99695 * 1 2 3 27 27 H 1.09001 * 109.47192 * 330.00460 * 1 2 3 28 28 H 1.07994 * 120.00175 * 359.97438 * 3 2 1 29 29 H 1.08006 * 119.99938 * 179.97438 * 4 3 2 30 30 H 1.07995 * 120.00164 * 180.02562 * 5 4 3 31 31 H 1.00902 * 111.00090 * 181.46551 * 8 7 6 32 32 H 1.08995 * 109.47173 * 306.12945 * 9 8 7 33 33 H 1.09000 * 109.47114 * 66.13400 * 9 8 7 34 34 H 0.96700 * 113.99593 * 299.99937 * 12 10 9 35 35 H 0.96995 * 119.99745 * 179.97438 * 16 15 13 36 36 H 1.08996 * 113.61366 * 25.42920 * 21 7 6 37 37 H 1.08996 * 113.68589 * 254.53495 * 21 7 6 38 38 H 1.08997 * 113.61348 * 89.11231 * 22 21 7 39 39 H 1.08994 * 113.61274 * 219.93575 * 22 21 7 40 40 H 1.09000 * 113.61404 * 140.02887 * 23 22 21 41 41 H 1.09002 * 113.61177 * 270.92319 * 23 22 21 42 42 H 1.07997 * 120.00359 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 3.5806 -1.1970 0.0003 7 6 4.3342 -2.5021 0.0001 8 7 5.3765 -2.5588 -1.0334 9 6 4.8175 -2.2717 -2.3612 10 6 5.8946 -2.4890 -3.4259 11 1 6.2361 -3.5236 -3.3914 12 8 6.9968 -1.6150 -3.1738 13 6 5.3214 -2.1939 -4.7879 14 1 4.2916 -1.8829 -4.8847 15 6 6.1114 -2.3210 -5.9108 16 7 5.6110 -2.0639 -7.0995 17 14 7.8926 -2.8583 -5.7435 18 1 7.9727 -4.3389 -5.8235 19 1 8.6955 -2.2591 -6.8398 20 1 8.4259 -2.4037 -4.4342 21 6 4.8241 -2.9307 1.3934 22 6 4.4314 -4.3655 1.0036 23 6 3.4206 -3.7422 0.0265 24 6 2.1980 -1.1969 -0.0048 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1326 -0.0010 30 1 5.3517 0.0000 -0.0001 31 1 5.8466 -3.4516 -1.0243 32 1 3.9770 -2.9384 -2.5534 33 1 4.4761 -1.2372 -2.3957 34 1 6.7656 -0.6761 -3.1892 35 1 6.1670 -2.1529 -7.8893 36 1 4.2293 -2.5218 2.2102 37 1 5.8955 -2.7962 1.5413 38 1 5.2311 -4.9184 0.5108 39 1 3.9663 -4.9264 1.8142 40 1 3.3599 -4.2621 -0.9296 41 1 2.4428 -3.5549 0.4704 42 1 1.6581 -2.1322 -0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930819108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:31:55 Heat of formation + Delta-G solvation = -5.308587 kcal Electronic energy + Delta-G solvation = -21743.040624 eV Core-core repulsion = 18688.336658 eV Total energy + Delta-G solvation = -3054.703966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38759 -38.16797 -36.24658 -33.03056 -32.37417 -32.19791 -30.86113 -28.20104 -26.92682 -25.64617 -24.95886 -23.62481 -22.06516 -20.72105 -20.39702 -18.53317 -17.21712 -16.63967 -15.66320 -15.51659 -14.99509 -14.77669 -14.57210 -14.26967 -13.91471 -13.71755 -13.25078 -13.17038 -12.94656 -12.71417 -12.55043 -12.26471 -12.14832 -11.82103 -11.57154 -11.34551 -11.13033 -10.99305 -10.88795 -10.69237 -10.37202 -10.33988 -10.09497 -9.86538 -9.01215 -8.62433 -8.59225 -8.36580 -8.18776 -7.90234 -6.10361 -4.21404 1.53412 1.57717 3.40624 3.50324 3.78039 3.90853 4.36444 4.56170 4.62570 4.73787 4.78393 4.94751 5.03806 5.05360 5.24614 5.28795 5.37677 5.43711 5.58501 5.68957 5.73193 5.74160 5.78566 5.84861 5.91855 5.95515 6.02738 6.06191 6.18853 6.22590 6.26965 6.32507 6.34325 6.66852 6.71946 6.73140 6.85682 7.19896 7.35441 7.43757 7.67673 7.85500 8.32853 8.86795 9.12666 9.54595 11.00396 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.005494 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.606957 B = 5095.167052 C = 5821.282373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.126 4.126 4 C -0.120 4.120 5 C -0.096 4.096 6 C -0.052 4.052 7 C 0.135 3.865 8 N -0.653 5.653 9 C 0.047 3.953 10 C 0.198 3.802 11 H 0.049 0.951 12 O -0.572 6.572 13 C -0.563 4.563 14 H 0.070 0.930 15 C 0.083 3.917 16 N -0.894 5.894 17 Si 0.872 3.128 18 H -0.289 1.289 19 H -0.296 1.296 20 H -0.215 1.215 21 C -0.124 4.124 22 C -0.142 4.142 23 C -0.177 4.177 24 C -0.120 4.120 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.340 0.660 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.355 0.645 35 H 0.264 0.736 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.452 1.575 18.123 19.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.138 4.138 5 C -0.114 4.114 6 C -0.052 4.052 7 C 0.043 3.957 8 N -0.282 5.282 9 C -0.082 4.082 10 C 0.140 3.860 11 H 0.066 0.934 12 O -0.377 6.377 13 C -0.601 4.601 14 H 0.089 0.911 15 C -0.121 4.121 16 N -0.531 5.531 17 Si 0.698 3.302 18 H -0.216 1.216 19 H -0.223 1.223 20 H -0.138 1.138 21 C -0.162 4.162 22 C -0.179 4.179 23 C -0.217 4.217 24 C -0.138 4.138 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.146 0.854 31 H 0.159 0.841 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.201 0.799 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.871 1.663 18.088 19.090 hybrid contribution -0.135 -0.653 -0.591 0.891 sum -6.005 1.010 17.498 18.527 Atomic orbital electron populations 1.20759 0.91575 1.02253 1.02267 1.19812 0.95754 0.93182 1.00495 1.20964 0.94369 0.97194 1.01938 1.21138 0.94178 0.98077 1.00430 1.21033 1.00542 0.91379 0.98428 1.19472 0.92802 0.94187 0.98745 1.20922 0.90986 0.90252 0.93524 1.60458 1.25885 1.37514 1.04381 1.22620 0.97608 1.00864 0.87073 1.19728 0.83699 0.90735 0.91821 0.93356 1.86642 1.37501 1.19103 1.94487 1.21485 0.99850 1.48934 0.89808 0.91149 1.24990 0.99247 0.93123 0.94747 1.69964 1.37183 1.47745 0.98254 0.87023 0.84937 0.78011 0.80226 1.21583 1.22313 1.13758 1.23029 1.01855 0.95469 0.95853 1.22806 0.99274 0.96536 0.99328 1.23848 0.98854 0.98722 1.00245 1.20974 0.93678 0.97485 1.01661 0.91252 0.91880 0.91848 0.86625 0.86312 0.85412 0.84109 0.95381 0.91205 0.79883 0.92638 0.90007 0.90588 0.90169 0.91565 0.91190 0.89692 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16 2 C -0.09 -1.18 5.88 -104.63 -0.62 -1.79 16 3 C -0.13 -1.60 9.70 -39.58 -0.38 -1.98 16 4 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 5 C -0.10 -1.39 8.97 -39.58 -0.35 -1.75 16 6 C -0.05 -0.75 3.94 -104.62 -0.41 -1.16 16 7 C 0.14 1.90 0.94 -131.80 -0.12 1.77 16 8 N -0.65 -10.75 6.11 -100.17 -0.61 -11.37 16 9 C 0.05 0.93 4.79 -3.83 -0.02 0.91 16 10 C 0.20 4.62 2.45 -27.89 -0.07 4.55 16 11 H 0.05 1.16 7.57 -51.93 -0.39 0.76 16 12 O -0.57 -13.10 10.00 -35.23 -0.35 -13.45 16 13 C -0.56 -15.77 9.34 -34.44 -0.32 -16.09 16 14 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 15 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 16 N -0.89 -27.57 13.96 55.43 0.77 -26.80 16 17 Si 0.87 22.01 26.99 -169.99 -4.59 17.43 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 19 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 20 H -0.22 -5.32 5.30 56.52 0.30 -5.02 16 21 C -0.12 -1.48 7.40 -25.92 -0.19 -1.67 16 22 C -0.14 -1.58 7.72 -25.92 -0.20 -1.78 16 23 C -0.18 -2.25 6.60 -25.77 -0.17 -2.42 16 24 C -0.12 -1.64 8.85 -39.58 -0.35 -1.99 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.34 5.48 7.80 -39.29 -0.31 5.18 16 32 H 0.03 0.57 7.25 -51.93 -0.38 0.20 16 33 H 0.07 1.47 6.97 -51.93 -0.36 1.11 16 34 H 0.36 7.47 9.04 45.56 0.41 7.89 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.89 7.70 -51.93 -0.40 0.50 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.98 7.45 -51.93 -0.39 0.60 16 41 H 0.08 0.98 6.00 -51.93 -0.31 0.67 16 42 H 0.12 1.50 5.79 -52.49 -0.30 1.20 16 LS Contribution 333.42 15.07 5.02 5.02 Total: -1.00 -31.03 333.42 -8.98 -40.01 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -5.88 Total: 12.98 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -3.35 Total: -23.82 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.16 Total: -38.16 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.35 Total: -13.45 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.59 Total: 17.43 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.03 -8.98 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.698 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds