Wall clock time and date at job start Thu Apr 9 2020 13:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99979 * 2 1 4 4 N 1.46902 * 109.47160 * 123.00823 * 3 2 1 5 5 C 1.46901 * 111.00104 * 63.23541 * 4 3 2 6 6 C 1.50701 * 109.47217 * 66.04650 * 5 4 3 7 7 H 1.07998 * 119.99883 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00079 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00264 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99911 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46936 * 89.99964 * 10 8 6 12 12 H 1.48500 * 109.46874 * 209.99265 * 10 8 6 13 13 H 1.48497 * 109.47208 * 329.99745 * 10 8 6 14 14 C 1.46906 * 110.99835 * 299.28272 * 4 3 2 15 15 C 1.50696 * 109.47026 * 288.00985 * 14 4 3 16 16 C 1.38289 * 119.97323 * 272.43932 * 15 14 4 17 17 C 1.38247 * 120.11188 * 180.02562 * 16 15 14 18 18 C 1.38168 * 120.05382 * 359.67985 * 17 16 15 19 19 C 1.38712 * 119.94337 * 0.57568 * 18 17 16 20 20 O 1.35897 * 120.05237 * 179.71933 * 19 18 17 21 21 C 1.42902 * 117.00415 * 359.72371 * 20 19 18 22 22 C 1.52993 * 109.47190 * 179.97438 * 21 20 19 23 23 C 1.38129 * 119.97510 * 92.41553 * 15 14 4 24 24 H 1.07998 * 119.99834 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.00155 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00155 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47048 * 3.00812 * 3 2 1 28 28 H 1.09003 * 109.46768 * 243.00711 * 3 2 1 29 29 H 1.08993 * 109.47208 * 186.04928 * 5 4 3 30 30 H 1.09000 * 109.47151 * 306.04607 * 5 4 3 31 31 H 0.97003 * 120.00412 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.46861 * 168.00860 * 14 4 3 33 33 H 1.09002 * 109.46954 * 48.01196 * 14 4 3 34 34 H 1.08000 * 119.94203 * 0.02562 * 16 15 14 35 35 H 1.08002 * 119.97230 * 179.97438 * 17 16 15 36 36 H 1.08004 * 120.02503 * 180.28971 * 18 17 16 37 37 H 1.09008 * 109.46648 * 59.99813 * 21 20 19 38 38 H 1.09000 * 109.47332 * 300.00344 * 21 20 19 39 39 H 1.09003 * 109.46776 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.47675 * 299.99769 * 22 21 20 41 41 H 1.08998 * 109.47403 * 60.00473 * 22 21 20 42 42 H 1.08003 * 120.02041 * 0.02597 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9617 1.3520 1.1615 5 6 3.9789 0.2950 1.0833 6 6 4.8912 0.5612 -0.0864 7 1 4.7310 1.4286 -0.7096 8 6 5.9295 -0.3031 -0.3615 9 7 6.1243 -1.3596 0.3971 10 14 7.0598 0.0265 -1.8118 11 1 8.2030 0.8640 -1.3680 12 1 7.5684 -1.2624 -2.3458 13 1 6.3066 0.7400 -2.8742 14 6 2.2041 1.2617 2.4168 15 6 1.4607 2.5518 2.6487 16 6 2.0796 3.5965 3.3106 17 6 1.4000 4.7811 3.5253 18 6 0.1026 4.9264 3.0731 19 6 -0.5223 3.8781 2.4137 20 8 -1.8003 4.0166 1.9730 21 6 -2.4428 5.2672 2.2283 22 6 -3.8639 5.2354 1.6626 23 6 0.1618 2.6902 2.1996 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3564 2.1329 0.0539 28 1 2.6491 1.3865 -0.9158 29 1 4.5624 0.2834 2.0038 30 1 3.4904 -0.6703 0.9507 31 1 6.8550 -1.9675 0.2038 32 1 2.8915 1.0847 3.2440 33 1 1.4924 0.4385 2.3533 34 1 3.0955 3.4867 3.6603 35 1 1.8854 5.5954 4.0428 36 1 -0.4263 5.8537 3.2370 37 1 -1.8797 6.0691 1.7507 38 1 -2.4832 5.4421 3.3035 39 1 -4.3538 6.1895 1.8570 40 1 -3.8232 5.0608 0.5874 41 1 -4.4272 4.4335 2.1399 42 1 -0.3211 1.8739 1.6828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292881642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:37:35 Heat of formation + Delta-G solvation = 7.853013 kcal Electronic energy + Delta-G solvation = -21100.766231 eV Core-core repulsion = 18046.632994 eV Total energy + Delta-G solvation = -3054.133236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08533 -38.16817 -36.64242 -32.94492 -32.44886 -32.03815 -30.96643 -29.35276 -27.13181 -26.19956 -24.23784 -23.17828 -22.33624 -21.24271 -20.41657 -18.94501 -17.56549 -16.27233 -16.16990 -15.93820 -15.77550 -15.06089 -14.78799 -14.49960 -13.89594 -13.63418 -13.40686 -13.29029 -13.14671 -12.78240 -12.77835 -12.14407 -11.87869 -11.71618 -11.51200 -11.27289 -11.05786 -10.84280 -10.77442 -10.74472 -10.68270 -10.58662 -10.33990 -9.83831 -9.28014 -8.85312 -8.60569 -8.41355 -7.99146 -7.22023 -6.01950 -4.02813 1.53130 1.68150 2.76966 3.18492 3.33167 3.39176 3.42945 3.96532 4.44736 4.71882 4.75152 4.95422 5.03697 5.04891 5.20297 5.26778 5.33188 5.37019 5.49508 5.56291 5.60780 5.65394 5.71893 5.80997 5.83362 5.98758 6.11811 6.20120 6.32066 6.46040 6.47546 6.64284 6.67873 6.94101 6.98733 7.11166 7.14675 7.37745 7.38463 7.53494 7.81140 8.08757 8.19405 8.54377 9.04578 9.61215 11.08777 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025036 B = 0.004008 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.107422 B = 6983.930897 C = 7405.199120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.158 4.158 3 C 0.083 3.917 4 N -0.521 5.521 5 C 0.189 3.811 6 C -0.505 4.505 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.084 3.916 15 C -0.019 4.019 16 C -0.135 4.135 17 C -0.085 4.085 18 C -0.218 4.218 19 C 0.122 3.878 20 O -0.319 6.319 21 C 0.056 3.944 22 C -0.152 4.152 23 C -0.150 4.150 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.030 0.970 30 H -0.002 1.002 31 H 0.261 0.739 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.903 11.289 5.172 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.178 4.178 3 C -0.045 4.045 4 N -0.244 5.244 5 C 0.065 3.935 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.044 4.044 15 C -0.020 4.020 16 C -0.154 4.154 17 C -0.103 4.103 18 C -0.237 4.237 19 C 0.077 3.923 20 O -0.233 6.233 21 C -0.020 4.020 22 C -0.209 4.209 23 C -0.169 4.169 24 H 0.106 0.894 25 H 0.110 0.890 26 H 0.130 0.870 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.048 0.952 30 H 0.016 0.984 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.628 11.448 5.086 20.029 hybrid contribution 0.330 -0.497 -0.652 0.884 sum -15.298 10.951 4.434 19.329 Atomic orbital electron populations 1.23730 0.96000 1.00844 1.04791 1.23907 0.96184 1.01521 0.96208 1.21343 0.94445 0.92513 0.96195 1.62414 1.12589 1.50501 0.98860 1.19806 0.88541 0.87245 0.97941 1.21143 1.12006 1.09089 1.12083 0.91882 1.24965 0.97653 0.95085 0.96841 1.69954 1.31347 1.13685 1.38898 0.86521 0.80972 0.77425 0.82636 1.20662 1.21385 1.19860 1.21093 0.96153 0.92089 0.95052 1.19779 0.92153 0.96222 0.93859 1.20995 1.00148 0.93019 1.01210 1.20880 0.93672 0.97408 0.98348 1.21103 0.97489 0.98850 1.06298 1.18917 0.83621 0.94596 0.95121 1.86054 1.24640 1.36659 1.75974 1.22709 0.93920 0.85120 1.00213 1.21770 0.94076 1.02725 1.02329 1.20483 0.94840 0.96618 1.04949 0.89429 0.89018 0.87023 0.91973 0.89128 0.95243 0.98395 0.92962 0.90334 0.94103 0.85700 0.86185 0.86207 0.92234 0.92313 0.90595 0.91509 0.91588 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.38 13.43 29.01 0.39 -2.99 16 2 C -0.16 -2.92 7.43 -36.02 -0.27 -3.19 16 3 C 0.08 1.64 5.39 -4.97 -0.03 1.61 16 4 N -0.52 -11.12 4.65 -238.96 -1.11 -12.23 16 5 C 0.19 4.81 4.55 -4.98 -0.02 4.79 16 6 C -0.50 -13.95 8.47 -34.44 -0.29 -14.25 16 7 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 10 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 14 C 0.08 1.54 4.98 -4.97 -0.02 1.52 16 15 C -0.02 -0.32 4.99 -104.65 -0.52 -0.84 16 16 C -0.13 -2.06 9.71 -39.56 -0.38 -2.44 16 17 C -0.08 -1.12 10.04 -39.60 -0.40 -1.52 16 18 C -0.22 -2.83 9.04 -39.43 -0.36 -3.19 16 19 C 0.12 1.77 6.69 -39.22 -0.26 1.51 16 20 O -0.32 -4.27 10.14 -19.42 -0.20 -4.47 16 21 C 0.06 0.52 5.46 37.15 0.20 0.73 16 22 C -0.15 -1.11 10.28 37.15 0.38 -0.73 16 23 C -0.15 -2.37 8.20 -39.43 -0.32 -2.69 16 24 H 0.09 1.24 8.06 -52.49 -0.42 0.82 16 25 H 0.09 1.36 6.54 -52.49 -0.34 1.02 16 26 H 0.11 2.28 6.81 -52.49 -0.36 1.92 16 27 H 0.06 1.15 6.08 -51.93 -0.32 0.83 16 28 H 0.09 1.95 6.78 -51.93 -0.35 1.60 16 29 H 0.03 0.80 7.86 -51.93 -0.41 0.39 16 30 H 0.00 -0.05 6.31 -51.93 -0.33 -0.37 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.08 1.42 7.77 -51.93 -0.40 1.02 16 33 H 0.04 0.74 6.66 -51.93 -0.35 0.40 16 34 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.12 1.24 6.30 -52.48 -0.33 0.91 16 37 H 0.06 0.52 7.65 -51.92 -0.40 0.12 16 38 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.13 2.04 5.70 -52.48 -0.30 1.74 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -29.81 339.19 -8.81 -38.61 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.32 Total: 2.30 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -2.00 Total: -20.21 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.37 Total: -37.94 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.20 Total: -4.47 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.81 -8.81 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292881642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.468 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds