Wall clock time and date at job start Thu Apr 9 2020 13:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99979 * 2 1 4 4 N 1.46902 * 109.47160 * 123.00823 * 3 2 1 5 5 C 1.46901 * 111.00104 * 63.23541 * 4 3 2 6 6 C 1.50701 * 109.47217 * 66.04650 * 5 4 3 7 7 H 1.07998 * 119.99883 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00079 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00264 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99911 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46936 * 89.99964 * 10 8 6 12 12 H 1.48500 * 109.46874 * 209.99265 * 10 8 6 13 13 H 1.48497 * 109.47208 * 329.99745 * 10 8 6 14 14 C 1.46906 * 110.99835 * 299.28272 * 4 3 2 15 15 C 1.50696 * 109.47026 * 288.00985 * 14 4 3 16 16 C 1.38289 * 119.97323 * 272.43932 * 15 14 4 17 17 C 1.38247 * 120.11188 * 180.02562 * 16 15 14 18 18 C 1.38168 * 120.05382 * 359.67985 * 17 16 15 19 19 C 1.38712 * 119.94337 * 0.57568 * 18 17 16 20 20 O 1.35897 * 120.05237 * 179.71933 * 19 18 17 21 21 C 1.42902 * 117.00415 * 359.72371 * 20 19 18 22 22 C 1.52993 * 109.47190 * 179.97438 * 21 20 19 23 23 C 1.38129 * 119.97510 * 92.41553 * 15 14 4 24 24 H 1.07998 * 119.99834 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.00155 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00155 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47048 * 3.00812 * 3 2 1 28 28 H 1.09003 * 109.46768 * 243.00711 * 3 2 1 29 29 H 1.08993 * 109.47208 * 186.04928 * 5 4 3 30 30 H 1.09000 * 109.47151 * 306.04607 * 5 4 3 31 31 H 0.97003 * 120.00412 * 180.02562 * 9 8 6 32 32 H 1.08996 * 109.46861 * 168.00860 * 14 4 3 33 33 H 1.09002 * 109.46954 * 48.01196 * 14 4 3 34 34 H 1.08000 * 119.94203 * 0.02562 * 16 15 14 35 35 H 1.08002 * 119.97230 * 179.97438 * 17 16 15 36 36 H 1.08004 * 120.02503 * 180.28971 * 18 17 16 37 37 H 1.09008 * 109.46648 * 59.99813 * 21 20 19 38 38 H 1.09000 * 109.47332 * 300.00344 * 21 20 19 39 39 H 1.09003 * 109.46776 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.47675 * 299.99769 * 22 21 20 41 41 H 1.08998 * 109.47403 * 60.00473 * 22 21 20 42 42 H 1.08003 * 120.02041 * 0.02597 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9617 1.3520 1.1615 5 6 3.9789 0.2950 1.0833 6 6 4.8912 0.5612 -0.0864 7 1 4.7310 1.4286 -0.7096 8 6 5.9295 -0.3031 -0.3615 9 7 6.1243 -1.3596 0.3971 10 14 7.0598 0.0265 -1.8118 11 1 8.2030 0.8640 -1.3680 12 1 7.5684 -1.2624 -2.3458 13 1 6.3066 0.7400 -2.8742 14 6 2.2041 1.2617 2.4168 15 6 1.4607 2.5518 2.6487 16 6 2.0796 3.5965 3.3106 17 6 1.4000 4.7811 3.5253 18 6 0.1026 4.9264 3.0731 19 6 -0.5223 3.8781 2.4137 20 8 -1.8003 4.0166 1.9730 21 6 -2.4428 5.2672 2.2283 22 6 -3.8639 5.2354 1.6626 23 6 0.1618 2.6902 2.1996 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3564 2.1329 0.0539 28 1 2.6491 1.3865 -0.9158 29 1 4.5624 0.2834 2.0038 30 1 3.4904 -0.6703 0.9507 31 1 6.8550 -1.9675 0.2038 32 1 2.8915 1.0847 3.2440 33 1 1.4924 0.4385 2.3533 34 1 3.0955 3.4867 3.6603 35 1 1.8854 5.5954 4.0428 36 1 -0.4263 5.8537 3.2370 37 1 -1.8797 6.0691 1.7507 38 1 -2.4832 5.4421 3.3035 39 1 -4.3538 6.1895 1.8570 40 1 -3.8232 5.0608 0.5874 41 1 -4.4272 4.4335 2.1399 42 1 -0.3211 1.8739 1.6828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292881642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:37:34 Heat of formation + Delta-G solvation = -9.316642 kcal Electronic energy + Delta-G solvation = -21101.510763 eV Core-core repulsion = 18046.632994 eV Total energy + Delta-G solvation = -3054.877769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15258 -39.49671 -37.95880 -34.92836 -33.92180 -32.82941 -32.37727 -30.39923 -29.01346 -27.67025 -25.74720 -24.31922 -23.44194 -22.84522 -21.57912 -20.45636 -18.69453 -18.30335 -17.05467 -17.00646 -16.95906 -16.75588 -16.48142 -15.84925 -15.60058 -14.94810 -14.71391 -14.35649 -14.21427 -14.02546 -13.97240 -13.37123 -13.25072 -13.00721 -12.80076 -12.68430 -12.61545 -12.52676 -12.30062 -12.23824 -12.13662 -11.82440 -11.62651 -11.57364 -11.24757 -10.60755 -10.28946 -9.76922 -9.07948 -8.96206 -8.18287 -6.27286 0.39719 0.56405 1.36210 1.41405 1.42445 1.53475 2.29669 2.41396 2.81448 3.14457 3.55760 3.87959 3.90730 4.07199 4.10017 4.13955 4.22177 4.25125 4.38156 4.40912 4.48415 4.52466 4.65354 4.73037 4.75446 4.93166 4.94695 4.97562 5.06967 5.15220 5.23516 5.24859 5.32501 5.40405 5.54218 5.64089 5.71420 5.78285 5.81836 5.87855 6.08990 6.34616 6.54302 6.63506 6.88071 7.41641 8.92459 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025036 B = 0.004008 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.107422 B = 6983.930897 C = 7405.199120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.188 4.188 3 C 0.092 3.908 4 N -0.528 5.528 5 C 0.206 3.794 6 C -0.518 4.518 7 H 0.060 0.940 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.266 1.266 14 C 0.090 3.910 15 C -0.035 4.035 16 C -0.151 4.151 17 C -0.079 4.079 18 C -0.211 4.211 19 C 0.119 3.881 20 O -0.334 6.334 21 C 0.045 3.955 22 C -0.149 4.149 23 C -0.164 4.164 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.002 0.998 30 H -0.024 1.024 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.122 0.878 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.587 13.626 4.942 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.208 4.208 3 C -0.036 4.036 4 N -0.250 5.250 5 C 0.081 3.919 6 C -0.557 4.557 7 H 0.078 0.922 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.038 4.038 15 C -0.036 4.036 16 C -0.170 4.170 17 C -0.096 4.096 18 C -0.230 4.230 19 C 0.074 3.926 20 O -0.249 6.249 21 C -0.030 4.030 22 C -0.206 4.206 23 C -0.183 4.183 24 H 0.127 0.873 25 H 0.125 0.875 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.020 0.980 30 H -0.006 1.006 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.140 0.860 35 H 0.169 0.831 36 H 0.169 0.831 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.339 13.803 4.858 22.688 hybrid contribution 0.682 -1.154 -0.523 1.439 sum -16.657 12.650 4.334 21.360 Atomic orbital electron populations 1.23932 0.94762 1.02495 1.00126 1.23553 0.97075 0.99649 1.00532 1.21203 0.94090 0.93881 0.94401 1.62304 1.13305 1.48561 1.00840 1.19421 0.89063 0.87527 0.95936 1.21426 1.12602 1.08993 1.12644 0.92204 1.25839 0.99214 0.94755 0.99627 1.70078 1.32107 1.14623 1.40648 0.85443 0.78847 0.77484 0.79214 1.19894 1.20836 1.19028 1.21017 0.95767 0.93736 0.93233 1.19556 0.92680 0.95587 0.95738 1.21109 1.00387 0.93785 1.01745 1.21205 0.93738 0.97174 0.97516 1.21462 0.97316 0.99505 1.04708 1.18991 0.84252 0.94419 0.94947 1.86047 1.24033 1.38910 1.75917 1.23065 0.94648 0.83808 1.01464 1.21807 0.93013 1.04063 1.01747 1.20440 0.94711 0.97464 1.05656 0.87341 0.87488 0.89745 0.90388 0.91595 0.97965 1.00621 0.92770 0.91141 0.94278 0.86038 0.83124 0.83064 0.91224 0.90902 0.88027 0.92124 0.91920 0.85715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.29 13.43 67.78 0.91 -4.38 16 2 C -0.19 -7.11 7.43 25.65 0.19 -6.92 16 3 C 0.09 3.74 5.39 85.56 0.46 4.20 16 4 N -0.53 -23.51 4.65 -909.94 -4.23 -27.74 16 5 C 0.21 11.10 4.55 85.56 0.39 11.49 16 6 C -0.52 -29.69 8.47 25.60 0.22 -29.47 16 7 H 0.06 3.40 7.12 -2.91 -0.02 3.37 16 8 C 0.00 0.20 5.46 84.65 0.46 0.66 16 9 N -0.93 -56.56 13.29 21.44 0.28 -56.27 16 10 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 14 C 0.09 3.44 4.98 85.55 0.43 3.87 16 15 C -0.03 -1.15 4.99 -19.88 -0.10 -1.25 16 16 C -0.15 -4.52 9.71 22.28 0.22 -4.30 16 17 C -0.08 -1.87 10.04 22.26 0.22 -1.64 16 18 C -0.21 -4.80 9.04 22.37 0.20 -4.60 16 19 C 0.12 3.20 6.69 22.50 0.15 3.35 16 20 O -0.33 -8.17 10.14 -92.40 -0.94 -9.10 16 21 C 0.04 0.69 5.46 71.98 0.39 1.09 16 22 C -0.15 -1.76 10.28 71.98 0.74 -1.02 16 23 C -0.16 -5.03 8.20 22.36 0.18 -4.85 16 24 H 0.11 2.85 8.06 -2.91 -0.02 2.82 16 25 H 0.11 2.95 6.54 -2.91 -0.02 2.93 16 26 H 0.08 3.66 6.81 -2.91 -0.02 3.64 16 27 H 0.08 2.89 6.08 -2.39 -0.01 2.88 16 28 H 0.07 2.96 6.78 -2.39 -0.02 2.94 16 29 H 0.00 0.13 7.86 -2.39 -0.02 0.11 16 30 H -0.02 -1.37 6.31 -2.39 -0.02 -1.38 16 31 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.07 2.73 7.77 -2.39 -0.02 2.71 16 33 H 0.04 1.48 6.66 -2.39 -0.02 1.47 16 34 H 0.12 3.61 8.06 -2.91 -0.02 3.58 16 35 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.15 2.44 6.30 -2.91 -0.02 2.42 16 37 H 0.07 0.95 7.65 -2.38 -0.02 0.93 16 38 H 0.07 0.94 7.67 -2.39 -0.02 0.92 16 39 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.13 3.83 5.70 -2.91 -0.02 3.81 16 Total: -1.00 -65.97 339.19 3.20 -62.77 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.99 Total: 17.19 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 5.07 Total: -33.77 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -3.94 Total: -84.01 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.94 Total: -9.10 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -65.97 3.20 -62.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292881642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.449 kcal (2) G-P(sol) polarization free energy of solvation -65.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds