Wall clock time and date at job start Thu Apr 9 2020 13:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99475 * 2 1 4 4 C 1.38759 * 120.12575 * 359.97438 * 3 2 1 5 5 C 1.37928 * 119.76655 * 180.12761 * 4 3 2 6 6 C 1.38723 * 120.42973 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.93753 * 359.80305 * 6 5 4 8 8 C 1.38508 * 120.12028 * 180.02562 * 3 2 1 9 9 C 1.50632 * 121.83907 * 180.58751 * 7 6 5 10 10 N 1.46622 * 110.50908 * 342.25530 * 9 7 6 11 11 C 1.46897 * 110.99980 * 175.96995 * 10 9 7 12 12 H 1.09000 * 109.47410 * 186.98595 * 11 10 9 13 13 C 1.52999 * 109.47178 * 306.98887 * 11 10 9 14 14 C 1.53002 * 109.47061 * 66.98895 * 11 10 9 15 15 C 1.50694 * 109.47155 * 64.99821 * 14 11 10 16 16 H 1.07994 * 120.00493 * 359.97438 * 15 14 11 17 17 C 1.37885 * 120.00011 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00243 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99920 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46866 * 90.00089 * 19 17 15 21 21 H 1.48496 * 109.46989 * 210.00546 * 19 17 15 22 22 H 1.48503 * 109.46771 * 330.00551 * 19 17 15 23 23 C 1.47154 * 110.26890 * 52.53670 * 10 9 7 24 24 C 1.50739 * 118.42966 * 179.57583 * 6 5 4 25 25 H 1.08996 * 109.47596 * 60.00320 * 1 2 3 26 26 H 1.09011 * 109.46748 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47432 * 299.99583 * 1 2 3 28 28 H 1.07995 * 120.11486 * 0.11023 * 4 3 2 29 29 H 1.08007 * 119.79011 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.83653 * 359.97438 * 8 3 2 31 31 H 1.09008 * 109.26719 * 102.52545 * 9 7 6 32 32 H 1.09007 * 109.26674 * 221.98969 * 9 7 6 33 33 H 1.08999 * 109.47474 * 60.00297 * 13 11 10 34 34 H 1.08999 * 109.46758 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.47322 * 299.99425 * 13 11 10 36 36 H 1.09007 * 109.47305 * 185.00175 * 14 11 10 37 37 H 1.08999 * 109.47099 * 304.99838 * 14 11 10 38 38 H 0.97000 * 120.00223 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.63370 * 169.06499 * 23 10 9 40 40 H 1.09002 * 109.79157 * 48.57340 * 23 10 9 41 41 H 1.08995 * 109.39145 * 283.17825 * 24 6 5 42 42 H 1.08998 * 109.38942 * 42.97962 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2926 2.3763 -0.0005 5 6 1.9264 3.6014 -0.0032 6 6 3.3116 3.6758 -0.0048 7 6 4.0628 2.5196 0.0004 8 6 3.4289 1.2865 -0.0005 9 6 5.5688 2.5505 0.0120 10 7 6.0588 3.8689 -0.4021 11 6 7.5226 3.9414 -0.3032 12 1 7.8497 4.9632 -0.4959 13 6 7.9602 3.5222 1.1017 14 6 8.1506 3.0019 -1.3346 15 6 7.8203 3.4869 -2.7226 16 1 7.2219 4.3759 -2.8559 17 6 8.2812 2.7948 -3.8226 18 7 7.9933 3.2183 -5.0339 19 14 9.3156 1.2565 -3.5922 20 1 8.4275 0.0681 -3.5268 21 1 10.2511 1.1131 -4.7364 22 1 10.0903 1.3655 -2.3299 23 6 5.4229 4.9247 0.4020 24 6 3.9571 5.0379 -0.0175 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2139 2.3242 0.0008 29 1 1.3404 4.5087 -0.0032 30 1 4.0165 0.3804 -0.0005 31 1 5.9252 2.3342 1.0192 32 1 5.9494 1.7936 -0.6739 33 1 7.6333 2.5004 1.2944 34 1 9.0464 3.5764 1.1752 35 1 7.5129 4.1915 1.8365 36 1 9.2325 2.9881 -1.2024 37 1 7.7551 1.9955 -1.1976 38 1 8.3178 2.7317 -5.8077 39 1 5.9287 5.8740 0.2257 40 1 5.4823 4.6691 1.4600 41 1 3.8995 5.4563 -1.0223 42 1 3.4327 5.6933 0.6779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298261530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:37:45 Heat of formation + Delta-G solvation = -8.998938 kcal Electronic energy + Delta-G solvation = -21624.873795 eV Core-core repulsion = 18570.009803 eV Total energy + Delta-G solvation = -3054.863992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.32008 -38.85919 -36.84373 -33.55215 -32.34997 -31.81588 -29.57293 -29.01004 -27.75670 -26.91538 -24.79995 -23.15121 -22.18394 -22.05490 -19.92565 -18.70317 -17.59857 -16.53507 -16.20368 -15.75713 -15.45488 -15.43736 -14.58413 -14.34322 -13.99370 -13.64929 -13.48100 -13.08782 -12.94097 -12.82187 -12.38914 -12.27623 -12.12135 -11.90658 -11.75208 -11.50298 -11.43757 -11.07324 -10.78826 -10.61924 -10.46454 -10.39274 -10.01779 -9.69759 -9.51369 -9.01775 -8.61480 -8.39506 -7.84941 -7.53574 -5.87970 -3.82020 1.49413 1.61195 3.28467 3.38014 3.45584 3.47206 3.88858 4.45536 4.56882 4.82340 4.92710 5.01285 5.04070 5.08122 5.33103 5.36802 5.39231 5.44146 5.49019 5.59525 5.67796 5.71234 5.75150 5.88218 5.92234 5.94667 6.07232 6.16338 6.19594 6.35915 6.44479 6.46392 6.53147 6.56931 6.75025 6.80181 6.99076 7.15577 7.33417 7.48557 7.73750 7.82393 7.97295 8.74668 9.24900 9.74942 11.26121 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.005371 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.071374 B = 5211.807382 C = 5976.629755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.118 3.882 4 C -0.212 4.212 5 C -0.084 4.084 6 C -0.100 4.100 7 C -0.024 4.024 8 C -0.149 4.149 9 C 0.087 3.913 10 N -0.501 5.501 11 C 0.095 3.905 12 H 0.079 0.921 13 C -0.189 4.189 14 C -0.007 4.007 15 C -0.490 4.490 16 H 0.079 0.921 17 C 0.062 3.938 18 N -0.907 5.907 19 Si 0.871 3.129 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.268 1.268 23 C 0.050 3.950 24 C -0.070 4.070 25 H 0.054 0.946 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.128 0.872 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.019 0.981 37 H 0.011 0.989 38 H 0.259 0.741 39 H 0.076 0.924 40 H 0.029 0.971 41 H 0.084 0.916 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.725 -1.230 14.109 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.231 4.231 5 C -0.102 4.102 6 C -0.100 4.100 7 C -0.024 4.024 8 C -0.168 4.168 9 C -0.040 4.040 10 N -0.224 5.224 11 C -0.013 4.013 12 H 0.097 0.903 13 C -0.248 4.248 14 C -0.044 4.044 15 C -0.529 4.529 16 H 0.097 0.903 17 C -0.137 4.137 18 N -0.548 5.548 19 Si 0.699 3.301 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.193 1.193 23 C -0.078 4.078 24 C -0.108 4.108 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.070 0.930 28 H 0.141 0.859 29 H 0.139 0.861 30 H 0.146 0.854 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.037 0.963 37 H 0.030 0.970 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.102 0.898 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.732 -1.381 13.412 18.544 hybrid contribution 0.380 -0.973 0.710 1.263 sum -12.352 -2.354 14.122 18.908 Atomic orbital electron populations 1.22989 0.78880 1.03532 1.01152 1.86055 1.20979 1.27234 1.89141 1.18825 0.92176 0.83922 0.97721 1.21054 0.99488 0.92435 1.10137 1.20833 0.93895 0.96861 0.98643 1.19530 0.92813 0.95218 1.02458 1.19517 0.95651 0.91528 0.95737 1.20270 0.91290 0.98197 1.07071 1.21062 0.89453 0.94060 0.99424 1.62377 1.06213 1.01292 1.52516 1.21759 0.85454 1.01396 0.92667 0.90289 1.22587 1.01771 1.01152 0.99327 1.19686 0.95039 0.94355 0.95366 1.21043 1.31620 1.12379 0.87830 0.90297 1.25002 0.96199 0.97156 0.95348 1.69908 1.46901 1.40295 0.97664 0.86931 0.80919 0.84594 0.77698 1.20551 1.21631 1.19274 1.22133 0.94573 0.96434 0.94701 1.20480 0.94793 0.93068 1.02429 0.92771 0.88567 0.92958 0.85941 0.86109 0.85366 0.93452 0.88385 0.92711 0.92325 0.93679 0.96318 0.97044 0.93092 0.90581 0.95279 0.89773 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.38 10.50 -19.44 -0.20 -4.58 16 3 C 0.12 1.75 6.68 -39.29 -0.26 1.49 16 4 C -0.21 -2.80 9.04 -39.50 -0.36 -3.16 16 5 C -0.08 -1.14 9.65 -39.52 -0.38 -1.52 16 6 C -0.10 -1.55 5.77 -104.55 -0.60 -2.15 16 7 C -0.02 -0.40 5.79 -104.63 -0.61 -1.01 16 8 C -0.15 -2.40 9.59 -39.33 -0.38 -2.78 16 9 C 0.09 1.55 4.49 -5.16 -0.02 1.53 16 10 N -0.50 -9.42 4.35 -228.21 -0.99 -10.41 16 11 C 0.10 1.84 2.25 -67.71 -0.15 1.68 16 12 H 0.08 1.56 7.89 -51.93 -0.41 1.15 16 13 C -0.19 -2.98 8.43 37.16 0.31 -2.67 16 14 C -0.01 -0.16 3.44 -27.88 -0.10 -0.26 16 15 C -0.49 -13.91 9.39 -34.44 -0.32 -14.23 16 16 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 17 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 18 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 19 Si 0.87 22.01 27.47 -169.99 -4.67 17.34 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 23 C 0.05 0.77 5.01 -3.74 -0.02 0.75 16 24 C -0.07 -1.00 5.94 -27.92 -0.17 -1.17 16 25 H 0.05 0.45 7.67 -51.93 -0.40 0.05 16 26 H 0.10 0.65 8.14 -51.92 -0.42 0.22 16 27 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 28 H 0.12 1.27 6.32 -52.49 -0.33 0.94 16 29 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 30 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 31 H 0.05 0.77 5.93 -51.92 -0.31 0.46 16 32 H 0.10 1.93 6.55 -51.93 -0.34 1.59 16 33 H 0.05 0.84 6.23 -51.93 -0.32 0.52 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.63 7.04 -51.93 -0.37 0.26 16 36 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 37 H 0.01 0.27 5.87 -51.93 -0.30 -0.04 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.08 1.11 7.85 -51.93 -0.41 0.70 16 40 H 0.03 0.42 7.26 -51.93 -0.38 0.04 16 41 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -32.35 326.23 -8.80 -41.14 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.46 Total: -0.15 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -2.16 Total: -20.50 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.22 Total: -38.17 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.20 Total: -4.58 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.35 -8.80 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298261530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.143 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds