Wall clock time and date at job start Thu Apr 9 2020 13:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99475 * 2 1 4 4 C 1.38759 * 120.12575 * 359.97438 * 3 2 1 5 5 C 1.37928 * 119.76655 * 180.12761 * 4 3 2 6 6 C 1.38723 * 120.42973 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.93753 * 359.80305 * 6 5 4 8 8 C 1.38508 * 120.12028 * 180.02562 * 3 2 1 9 9 C 1.50632 * 121.83907 * 180.58751 * 7 6 5 10 10 N 1.46622 * 110.50908 * 342.25530 * 9 7 6 11 11 C 1.46897 * 110.99980 * 175.96995 * 10 9 7 12 12 H 1.09000 * 109.47410 * 186.98595 * 11 10 9 13 13 C 1.52999 * 109.47178 * 306.98887 * 11 10 9 14 14 C 1.53002 * 109.47061 * 66.98895 * 11 10 9 15 15 C 1.50694 * 109.47155 * 64.99821 * 14 11 10 16 16 H 1.07994 * 120.00493 * 359.97438 * 15 14 11 17 17 C 1.37885 * 120.00011 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00243 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99920 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46866 * 90.00089 * 19 17 15 21 21 H 1.48496 * 109.46989 * 210.00546 * 19 17 15 22 22 H 1.48503 * 109.46771 * 330.00551 * 19 17 15 23 23 C 1.47154 * 110.26890 * 52.53670 * 10 9 7 24 24 C 1.50739 * 118.42966 * 179.57583 * 6 5 4 25 25 H 1.08996 * 109.47596 * 60.00320 * 1 2 3 26 26 H 1.09011 * 109.46748 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47432 * 299.99583 * 1 2 3 28 28 H 1.07995 * 120.11486 * 0.11023 * 4 3 2 29 29 H 1.08007 * 119.79011 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.83653 * 359.97438 * 8 3 2 31 31 H 1.09008 * 109.26719 * 102.52545 * 9 7 6 32 32 H 1.09007 * 109.26674 * 221.98969 * 9 7 6 33 33 H 1.08999 * 109.47474 * 60.00297 * 13 11 10 34 34 H 1.08999 * 109.46758 * 180.02562 * 13 11 10 35 35 H 1.09000 * 109.47322 * 299.99425 * 13 11 10 36 36 H 1.09007 * 109.47305 * 185.00175 * 14 11 10 37 37 H 1.08999 * 109.47099 * 304.99838 * 14 11 10 38 38 H 0.97000 * 120.00223 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.63370 * 169.06499 * 23 10 9 40 40 H 1.09002 * 109.79157 * 48.57340 * 23 10 9 41 41 H 1.08995 * 109.39145 * 283.17825 * 24 6 5 42 42 H 1.08998 * 109.38942 * 42.97962 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2926 2.3763 -0.0005 5 6 1.9264 3.6014 -0.0032 6 6 3.3116 3.6758 -0.0048 7 6 4.0628 2.5196 0.0004 8 6 3.4289 1.2865 -0.0005 9 6 5.5688 2.5505 0.0120 10 7 6.0588 3.8689 -0.4021 11 6 7.5226 3.9414 -0.3032 12 1 7.8497 4.9632 -0.4959 13 6 7.9602 3.5222 1.1017 14 6 8.1506 3.0019 -1.3346 15 6 7.8203 3.4869 -2.7226 16 1 7.2219 4.3759 -2.8559 17 6 8.2812 2.7948 -3.8226 18 7 7.9933 3.2183 -5.0339 19 14 9.3156 1.2565 -3.5922 20 1 8.4275 0.0681 -3.5268 21 1 10.2511 1.1131 -4.7364 22 1 10.0903 1.3655 -2.3299 23 6 5.4229 4.9247 0.4020 24 6 3.9571 5.0379 -0.0175 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2139 2.3242 0.0008 29 1 1.3404 4.5087 -0.0032 30 1 4.0165 0.3804 -0.0005 31 1 5.9252 2.3342 1.0192 32 1 5.9494 1.7936 -0.6739 33 1 7.6333 2.5004 1.2944 34 1 9.0464 3.5764 1.1752 35 1 7.5129 4.1915 1.8365 36 1 9.2325 2.9881 -1.2024 37 1 7.7551 1.9955 -1.1976 38 1 8.3178 2.7317 -5.8077 39 1 5.9287 5.8740 0.2257 40 1 5.4823 4.6691 1.4600 41 1 3.8995 5.4563 -1.0223 42 1 3.4327 5.6933 0.6779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298261530.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:37:45 Heat of formation + Delta-G solvation = -29.623299 kcal Electronic energy + Delta-G solvation = -21625.768135 eV Core-core repulsion = 18570.009803 eV Total energy + Delta-G solvation = -3055.758331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.44061 -40.03417 -38.06999 -35.20142 -34.01168 -33.19283 -31.00293 -30.12609 -29.40944 -27.79912 -26.09149 -24.79160 -23.59656 -23.21080 -21.34750 -19.97620 -18.80569 -18.64221 -17.33161 -16.75153 -16.70359 -16.52774 -16.34760 -15.62152 -15.48729 -14.83665 -14.68744 -14.61638 -14.24529 -14.07423 -13.98025 -13.67702 -13.46009 -13.25114 -13.01847 -12.77616 -12.61632 -12.51226 -12.30115 -11.95669 -11.74285 -11.67058 -11.53630 -11.48843 -11.30273 -11.03741 -10.66299 -9.77866 -8.94922 -8.88940 -8.16527 -6.14840 0.36965 0.49054 1.36775 1.37414 1.48364 2.36923 2.42096 2.76300 3.08308 3.24421 3.76988 3.84937 3.97910 4.12700 4.19063 4.26747 4.33699 4.40596 4.40950 4.43069 4.49953 4.53539 4.59283 4.66188 4.71765 4.82715 4.86634 4.94609 5.03395 5.07598 5.09876 5.15897 5.23732 5.28034 5.36685 5.46155 5.55450 5.69540 5.77246 5.88011 6.36769 6.38853 6.49296 6.55899 6.93366 7.45531 9.01078 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.005371 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.071374 B = 5211.807382 C = 5976.629755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.112 3.888 4 C -0.208 4.208 5 C -0.081 4.081 6 C -0.118 4.118 7 C -0.047 4.047 8 C -0.172 4.172 9 C 0.095 3.905 10 N -0.532 5.532 11 C 0.098 3.902 12 H 0.069 0.931 13 C -0.178 4.178 14 C -0.005 4.005 15 C -0.487 4.487 16 H 0.036 0.964 17 C -0.002 4.002 18 N -0.959 5.959 19 Si 0.939 3.061 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.244 1.244 23 C 0.051 3.949 24 C -0.067 4.067 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.122 0.878 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.013 0.987 38 H 0.260 0.740 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.067 0.933 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.901 -1.613 16.408 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.067 3.933 4 C -0.226 4.226 5 C -0.099 4.099 6 C -0.118 4.118 7 C -0.048 4.048 8 C -0.192 4.192 9 C -0.033 4.033 10 N -0.255 5.255 11 C -0.010 4.010 12 H 0.087 0.913 13 C -0.236 4.236 14 C -0.042 4.042 15 C -0.526 4.526 16 H 0.054 0.946 17 C -0.197 4.197 18 N -0.601 5.601 19 Si 0.764 3.236 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.168 1.168 23 C -0.077 4.077 24 C -0.104 4.104 25 H 0.080 0.920 26 H 0.136 0.864 27 H 0.087 0.913 28 H 0.172 0.828 29 H 0.170 0.830 30 H 0.140 0.860 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.914 -1.762 15.743 21.084 hybrid contribution 0.592 -0.815 -0.032 1.007 sum -13.323 -2.577 15.711 20.760 Atomic orbital electron populations 1.23336 0.76398 1.05485 1.02298 1.86033 1.23587 1.26884 1.88952 1.18956 0.91950 0.85062 0.97340 1.21422 1.01058 0.91610 1.08505 1.21194 0.93266 0.98296 0.97160 1.19773 0.93932 0.95124 1.02984 1.19556 0.95171 0.92520 0.97522 1.20356 0.92431 0.97924 1.08450 1.20901 0.90432 0.92741 0.99203 1.62260 1.06004 1.02681 1.54593 1.21558 0.86117 0.99680 0.93681 0.91313 1.22434 1.02434 1.01716 0.97049 1.19633 0.95534 0.95290 0.93777 1.21297 1.30011 1.10706 0.90579 0.94606 1.25919 0.97944 1.00931 0.94912 1.70080 1.49011 1.42308 0.98736 0.85820 0.79245 0.79944 0.78571 1.20161 1.21398 1.16776 1.22198 0.95017 0.95363 0.95095 1.20496 0.94402 0.93143 1.02340 0.91983 0.86440 0.91290 0.82771 0.83020 0.85956 0.91991 0.91593 0.92403 0.91434 0.91476 0.95856 0.96897 0.93134 0.90241 0.93598 0.91504 0.87839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.87 10.50 -92.48 -0.97 -9.84 16 3 C 0.11 3.21 6.68 22.46 0.15 3.36 16 4 C -0.21 -4.95 9.04 22.32 0.20 -4.75 16 5 C -0.08 -1.99 9.65 22.31 0.22 -1.78 16 6 C -0.12 -3.51 5.77 -19.82 -0.11 -3.63 16 7 C -0.05 -1.60 5.79 -19.87 -0.12 -1.71 16 8 C -0.17 -5.62 9.59 22.43 0.22 -5.41 16 9 C 0.09 3.39 4.49 85.59 0.38 3.78 16 10 N -0.53 -20.12 4.35 -875.91 -3.81 -23.93 16 11 C 0.10 3.75 2.25 44.92 0.10 3.86 16 12 H 0.07 2.73 7.89 -2.39 -0.02 2.72 16 13 C -0.18 -5.22 8.43 71.98 0.61 -4.62 16 14 C 0.00 -0.23 3.44 29.85 0.10 -0.12 16 15 C -0.49 -28.61 9.39 25.60 0.24 -28.37 16 16 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 17 C 0.00 -0.14 5.47 84.66 0.46 0.32 16 18 N -0.96 -62.51 13.96 21.45 0.30 -62.21 16 19 Si 0.94 45.99 27.47 68.60 1.88 47.87 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 22 H -0.24 -10.93 6.54 99.48 0.65 -10.28 16 23 C 0.05 1.50 5.01 86.22 0.43 1.93 16 24 C -0.07 -1.81 5.94 29.82 0.18 -1.63 16 25 H 0.06 0.85 7.67 -2.39 -0.02 0.84 16 26 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.07 0.83 7.67 -2.39 -0.02 0.81 16 28 H 0.15 2.60 6.32 -2.91 -0.02 2.58 16 29 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.06 1.97 5.93 -2.38 -0.01 1.95 16 32 H 0.07 2.72 6.55 -2.38 -0.02 2.70 16 33 H 0.06 1.67 6.23 -2.39 -0.01 1.65 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 1.69 7.04 -2.39 -0.02 1.67 16 36 H 0.02 1.07 7.20 -2.38 -0.02 1.05 16 37 H 0.01 0.60 5.87 -2.39 -0.01 0.59 16 38 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 39 H 0.08 2.24 7.85 -2.39 -0.02 2.23 16 40 H 0.05 1.20 7.26 -2.39 -0.02 1.18 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -72.83 326.23 2.52 -70.31 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.94 Total: 15.15 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 4.17 Total: -37.36 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -3.51 Total: -86.13 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.97 Total: -9.84 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.88 Total: 47.87 kcal Total: -72.83 2.52 -70.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298261530.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.691 kcal (2) G-P(sol) polarization free energy of solvation -72.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds