Wall clock time and date at job start Thu Apr 9 2020 13:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35898 * 117.00248 * 2 1 4 4 C 1.38580 * 119.88528 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.76415 * 179.97438 * 4 3 2 6 6 C 1.38076 * 119.93393 * 0.23732 * 5 4 3 7 7 C 1.38738 * 120.49840 * 359.66582 * 6 5 4 8 8 C 1.37783 * 119.75292 * 0.20151 * 7 6 5 9 9 C 1.50707 * 121.68515 * 180.08188 * 8 7 6 10 10 C 1.52899 * 109.95084 * 343.12881 * 9 8 7 11 11 N 1.47160 * 108.49075 * 50.39376 * 10 9 8 12 12 C 1.46898 * 111.00313 * 165.30714 * 11 10 9 13 13 H 1.09006 * 109.46477 * 54.59639 * 12 11 10 14 14 C 1.53007 * 109.47155 * 294.60220 * 12 11 10 15 15 C 1.52992 * 109.47536 * 174.59735 * 12 11 10 16 16 C 1.50699 * 109.47261 * 183.74566 * 15 12 11 17 17 H 1.07993 * 120.00367 * 5.19541 * 16 15 12 18 18 C 1.37884 * 119.99698 * 185.19675 * 16 15 12 19 19 N 1.31515 * 120.00108 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99633 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47314 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47104 * 119.99796 * 20 18 16 23 23 H 1.48502 * 109.46745 * 239.99751 * 20 18 16 24 24 C 1.46623 * 110.26407 * 288.74370 * 11 10 9 25 25 H 1.09002 * 109.47264 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46999 * 300.00398 * 1 2 3 27 27 H 1.09006 * 109.46543 * 60.00540 * 1 2 3 28 28 H 1.08005 * 120.11549 * 359.97438 * 4 3 2 29 29 H 1.08000 * 120.02984 * 180.08936 * 5 4 3 30 30 H 1.08004 * 119.75091 * 180.02562 * 6 5 4 31 31 H 1.09004 * 109.38899 * 103.27492 * 9 8 7 32 32 H 1.09001 * 109.39301 * 223.07039 * 9 8 7 33 33 H 1.09006 * 109.63427 * 170.09654 * 10 9 8 34 34 H 1.09003 * 109.63194 * 290.69283 * 10 9 8 35 35 H 1.08997 * 109.46483 * 299.99493 * 14 12 11 36 36 H 1.08999 * 109.47146 * 59.99447 * 14 12 11 37 37 H 1.08994 * 109.46849 * 179.97438 * 14 12 11 38 38 H 1.09000 * 109.47077 * 303.74890 * 15 12 11 39 39 H 1.09002 * 109.47009 * 63.74210 * 15 12 11 40 40 H 0.96997 * 119.99469 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.26432 * 292.20675 * 24 11 10 42 42 H 1.09000 * 109.26495 * 172.74259 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2890 2.3716 0.0005 5 6 1.9187 3.6009 0.0011 6 6 3.2978 3.6686 -0.0039 7 6 4.0597 2.5092 -0.0024 8 6 3.4355 1.2808 -0.0002 9 6 4.2202 -0.0058 0.0032 10 6 5.6664 0.2639 -0.4133 11 7 6.1861 1.3761 0.3982 12 6 7.6496 1.4590 0.3021 13 1 7.9417 1.5240 -0.7461 14 6 8.2734 0.2103 0.9288 15 6 8.1400 2.7024 1.0464 16 6 9.6306 2.8379 0.8706 17 1 10.1613 2.1596 0.2190 18 6 10.3168 3.8277 1.5418 19 7 9.6704 4.6540 2.3350 20 14 12.1643 3.9960 1.3234 21 1 12.6489 2.9525 0.3845 22 1 12.4775 5.3400 0.7749 23 1 12.8353 3.8290 2.6376 24 6 5.5604 2.6379 -0.0095 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.2104 2.3151 0.0005 29 1 1.3329 4.5082 0.0030 30 1 3.7871 4.6315 -0.0030 31 1 4.2062 -0.4355 1.0049 32 1 3.7679 -0.7075 -0.6977 33 1 6.2694 -0.6278 -0.2417 34 1 5.6991 0.5341 -1.4688 35 1 7.9812 0.1453 1.9769 36 1 7.9239 -0.6756 0.3985 37 1 9.3592 0.2716 0.8571 38 1 7.6449 3.5859 0.6435 39 1 7.9063 2.6069 2.1068 40 1 10.1531 5.3505 2.8068 41 1 5.8946 2.8969 -1.0142 42 1 5.8571 3.4264 0.6821 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298856543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:37:46 Heat of formation + Delta-G solvation = -33.973283 kcal Electronic energy + Delta-G solvation = -21425.259183 eV Core-core repulsion = 18369.312222 eV Total energy + Delta-G solvation = -3055.946961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53576 -39.77266 -38.00491 -35.65360 -34.14245 -32.77021 -31.39638 -29.84384 -28.90083 -28.01619 -25.77164 -25.39900 -23.90550 -22.70308 -21.19221 -20.32496 -18.84495 -18.43530 -17.45115 -16.75824 -16.66832 -16.44617 -16.19570 -15.98689 -15.46887 -15.27112 -14.60184 -14.41933 -14.19690 -14.13209 -13.71613 -13.47216 -13.17032 -13.05422 -12.95026 -12.69364 -12.63594 -12.59300 -12.37697 -12.11416 -12.02006 -11.90144 -11.72601 -11.36697 -11.11676 -10.96624 -10.51822 -9.62511 -9.23260 -8.99941 -8.16908 -6.26315 0.35515 0.48326 1.40875 1.41433 1.54220 2.39378 2.41887 2.75315 3.00879 3.16775 3.72440 3.77782 4.08087 4.08356 4.21129 4.28769 4.36448 4.41299 4.43627 4.44613 4.51866 4.56472 4.62212 4.66623 4.77245 4.77618 4.81790 4.89018 5.05465 5.12105 5.22411 5.26579 5.37814 5.44092 5.48051 5.50888 5.64031 5.73678 5.78972 5.83835 6.12477 6.28269 6.39328 6.49817 6.89401 7.41619 8.95414 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032129 B = 0.003991 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.288368 B = 7013.808730 C = 7692.508780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.117 3.883 4 C -0.211 4.211 5 C -0.081 4.081 6 C -0.168 4.168 7 C -0.052 4.052 8 C -0.120 4.120 9 C -0.054 4.054 10 C 0.048 3.952 11 N -0.538 5.538 12 C 0.093 3.907 13 H 0.024 0.976 14 C -0.120 4.120 15 C 0.038 3.962 16 C -0.530 4.530 17 H 0.062 0.938 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.261 1.261 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.098 3.902 25 H 0.118 0.882 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.156 0.844 29 H 0.153 0.847 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.032 0.968 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.056 0.944 38 H -0.007 1.007 39 H -0.007 1.007 40 H 0.262 0.738 41 H 0.038 0.962 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.875 -8.249 -6.597 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.072 3.928 4 C -0.230 4.230 5 C -0.099 4.099 6 C -0.186 4.186 7 C -0.053 4.053 8 C -0.121 4.121 9 C -0.092 4.092 10 C -0.079 4.079 11 N -0.262 5.262 12 C -0.015 4.015 13 H 0.042 0.958 14 C -0.177 4.177 15 C 0.001 3.999 16 C -0.569 4.569 17 H 0.080 0.920 18 C -0.197 4.197 19 N -0.573 5.573 20 Si 0.787 3.213 21 H -0.185 1.185 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.030 4.030 25 H 0.137 0.863 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.173 0.827 29 H 0.171 0.829 30 H 0.143 0.857 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.050 0.950 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.012 0.988 39 H 0.012 0.988 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.887 -8.417 -5.995 21.529 hybrid contribution 1.105 1.008 -0.571 1.601 sum -17.782 -7.409 -6.565 20.352 Atomic orbital electron populations 1.23341 0.76535 1.05506 1.02193 1.86032 1.23297 1.26422 1.88592 1.18987 0.91334 0.85227 0.97275 1.21457 1.01116 0.91690 1.08705 1.21123 0.93614 0.98346 0.96849 1.21177 0.94899 0.97727 1.04847 1.19549 0.94493 0.93013 0.98228 1.19070 0.91157 0.95570 1.06282 1.20263 0.92698 0.93793 1.02415 1.22295 0.96137 0.95068 0.94445 1.62346 1.05759 1.03568 1.54560 1.21616 0.85168 0.97646 0.97052 0.95815 1.21635 1.00230 0.95587 1.00261 1.19045 0.94776 0.91704 0.94406 1.21595 0.93935 1.14700 1.26621 0.92007 1.25918 1.03371 0.95500 0.94880 1.70119 1.37661 1.19155 1.30329 0.85442 0.79624 0.78142 0.78100 1.18482 1.20615 1.20554 1.20851 0.90171 0.93354 0.98625 0.86337 0.91894 0.91609 0.82655 0.82928 0.85653 0.90775 0.89192 0.88785 0.94988 0.93606 0.91481 0.92534 0.98850 0.98814 0.92933 0.94369 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.48 9.63 -92.40 -0.89 -8.37 16 3 C 0.12 3.08 6.65 22.56 0.15 3.23 16 4 C -0.21 -4.65 9.03 22.32 0.20 -4.45 16 5 C -0.08 -1.88 10.04 22.20 0.22 -1.66 16 6 C -0.17 -4.89 9.64 22.35 0.22 -4.67 16 7 C -0.05 -1.75 5.79 -19.88 -0.12 -1.87 16 8 C -0.12 -3.71 5.78 -19.76 -0.11 -3.82 16 9 C -0.05 -1.56 5.54 29.82 0.17 -1.40 16 10 C 0.05 1.50 5.44 86.22 0.47 1.97 16 11 N -0.54 -20.85 4.54 -875.91 -3.98 -24.83 16 12 C 0.09 4.00 2.10 44.92 0.09 4.10 16 13 H 0.02 1.04 8.13 -2.38 -0.02 1.02 16 14 C -0.12 -4.62 8.94 71.98 0.64 -3.97 16 15 C 0.04 2.04 4.07 29.85 0.12 2.17 16 16 C -0.53 -30.08 8.29 25.60 0.21 -29.86 16 17 H 0.06 3.36 7.17 -2.91 -0.02 3.34 16 18 C 0.00 0.06 5.46 84.66 0.46 0.52 16 19 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 20 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 24 C 0.10 3.77 4.48 85.59 0.38 4.16 16 25 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.70 7.65 -2.39 -0.02 0.68 16 27 H 0.07 0.68 7.65 -2.38 -0.02 0.66 16 28 H 0.16 2.33 6.28 -2.91 -0.02 2.31 16 29 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.09 2.24 7.85 -2.39 -0.02 2.22 16 33 H 0.09 2.65 5.95 -2.38 -0.01 2.64 16 34 H 0.03 0.99 8.05 -2.39 -0.02 0.97 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.10 6.28 -2.39 -0.01 2.08 16 37 H 0.06 2.28 6.97 -2.39 -0.02 2.26 16 38 H -0.01 -0.38 6.17 -2.39 -0.01 -0.40 16 39 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.04 1.48 8.13 -2.39 -0.02 1.47 16 42 H 0.07 3.19 6.34 -2.39 -0.02 3.18 16 Total: -1.00 -67.96 329.02 2.66 -65.29 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 1.00 Total: 12.51 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 4.22 Total: -34.21 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -3.69 Total: -81.79 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.89 Total: -8.37 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.96 2.66 -65.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298856543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.320 kcal (2) G-P(sol) polarization free energy of solvation -67.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds