Wall clock time and date at job start Thu Apr 9 2020 13:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47155 * 2 1 4 4 N 1.46899 * 109.46742 * 119.99552 * 2 1 3 5 5 C 1.46897 * 111.00073 * 274.99967 * 4 2 1 6 6 C 1.50702 * 109.47252 * 180.02562 * 5 4 2 7 7 C 1.38633 * 119.75075 * 269.73033 * 6 5 4 8 8 C 1.37616 * 120.24993 * 179.72058 * 7 6 5 9 9 C 1.40721 * 119.74066 * 0.52837 * 8 7 6 10 10 C 1.41401 * 120.24308 * 179.72974 * 9 8 7 11 11 H 1.08004 * 119.99796 * 204.40597 * 10 9 8 12 12 C 1.39948 * 120.00105 * 24.39752 * 10 9 8 13 13 N 1.30826 * 119.99808 * 17.85137 * 12 10 9 14 14 Si 1.86796 * 119.99978 * 197.85291 * 12 10 9 15 15 H 1.48493 * 109.47291 * 90.00346 * 14 12 10 16 16 H 1.48504 * 109.46976 * 210.00522 * 14 12 10 17 17 H 1.48494 * 109.47135 * 329.99952 * 14 12 10 18 18 C 1.40716 * 119.51407 * 359.74283 * 9 8 7 19 19 C 1.37616 * 119.74173 * 0.02562 * 18 9 8 20 20 C 1.52999 * 109.47403 * 239.99645 * 2 1 3 21 21 H 1.09000 * 110.54028 * 301.16788 * 20 2 1 22 22 C 1.54807 * 110.48674 * 63.77858 * 20 2 1 23 23 C 1.54997 * 102.09303 * 139.55709 * 22 20 2 24 24 O 1.44572 * 103.58342 * 323.05721 * 23 22 20 25 25 C 1.43741 * 106.87177 * 39.87867 * 24 23 22 26 26 H 1.08999 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47389 * 300.00753 * 1 2 3 28 28 H 1.09004 * 109.47071 * 60.00132 * 1 2 3 29 29 H 1.00896 * 111.00316 * 38.95916 * 4 2 1 30 30 H 1.09003 * 109.47532 * 300.00209 * 5 4 2 31 31 H 1.08999 * 109.47433 * 60.00279 * 5 4 2 32 32 H 1.07999 * 119.87683 * 359.97438 * 7 6 5 33 33 H 1.07995 * 120.13493 * 180.27791 * 8 7 6 34 34 H 0.97002 * 119.99660 * 179.97438 * 13 12 10 35 35 H 1.07994 * 120.12564 * 179.97438 * 18 9 8 36 36 H 1.08003 * 119.87394 * 179.97438 * 19 18 9 37 37 H 1.08998 * 110.91240 * 257.75762 * 22 20 2 38 38 H 1.09007 * 110.90912 * 21.32535 * 22 20 2 39 39 H 1.09003 * 110.61543 * 81.47762 * 23 22 20 40 40 H 1.08994 * 110.62195 * 204.47522 * 23 22 20 41 41 H 1.09008 * 109.87648 * 214.17271 * 25 24 23 42 42 H 1.09002 * 109.88192 * 93.17270 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5883 -0.5213 3.5558 7 6 1.6886 -1.1472 4.4047 8 6 2.1397 -1.8343 5.5084 9 6 3.5194 -1.8906 5.7799 10 6 3.9942 -2.5888 6.9141 11 1 4.9471 -2.3268 7.3497 12 6 3.2292 -3.6191 7.4725 13 7 2.2710 -4.1738 6.7755 14 14 3.5762 -4.2023 9.2128 15 1 2.7606 -3.4138 10.1710 16 1 3.2267 -5.6407 9.3317 17 1 5.0173 -4.0162 9.5191 18 6 4.4230 -1.2467 4.9144 19 6 3.9496 -0.5695 3.8139 20 6 2.0401 -0.7213 -1.2492 21 1 1.6695 -1.7460 -1.2772 22 6 1.6166 0.0430 -2.5270 23 6 2.8877 -0.0667 -3.4073 24 8 3.9703 0.0440 -2.4556 25 6 3.5804 -0.7033 -1.2913 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.4495 -1.4978 1.4101 30 1 2.7588 1.0464 2.1182 31 1 1.0870 0.6165 2.5525 32 1 0.6299 -1.0989 4.1968 33 1 1.4375 -2.3250 6.1660 34 1 1.7410 -4.8882 7.1624 35 1 5.4838 -1.2833 5.1135 36 1 4.6412 -0.0742 3.1485 37 1 0.7675 -0.4429 -3.0076 38 1 1.3889 1.0846 -2.2999 39 1 2.9217 -1.0313 -3.9138 40 1 2.9261 0.7487 -4.1294 41 1 3.9701 -0.2220 -0.3942 42 1 3.9612 -1.7223 -1.3601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337217674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:37:55 Heat of formation + Delta-G solvation = -42.989814 kcal Electronic energy + Delta-G solvation = -20787.979824 eV Core-core repulsion = 17731.641877 eV Total energy + Delta-G solvation = -3056.337947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.63037 -37.80991 -36.40196 -33.90716 -32.42058 -30.44433 -29.28270 -28.95605 -28.54773 -26.02818 -23.44686 -22.76655 -21.99241 -20.99393 -20.27737 -19.68161 -17.27791 -16.45770 -16.13214 -15.47667 -15.09215 -14.96334 -14.69056 -14.18232 -13.86221 -13.46237 -13.30481 -13.00923 -12.70164 -12.49732 -12.39442 -11.93332 -11.73945 -11.66567 -11.47324 -11.32117 -11.18290 -11.06200 -10.94972 -10.88503 -10.63057 -10.39432 -10.32236 -9.60234 -9.53505 -9.37538 -9.13292 -8.04419 -7.43550 -7.28050 -6.75770 -4.34085 2.74617 3.06689 3.10313 3.10752 3.18780 3.93298 3.98212 4.29125 4.53528 4.65423 4.81630 4.97417 5.11990 5.16098 5.25677 5.40567 5.46293 5.57422 5.69281 5.72032 5.73503 5.77606 5.82398 5.91481 6.00535 6.07366 6.14501 6.28619 6.32531 6.38785 6.44315 6.90407 6.96258 7.08644 7.29127 7.39150 7.42419 7.62907 7.75376 7.91109 8.06936 8.15827 8.32077 8.65403 8.90902 8.99297 10.18719 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034225 B = 0.003266 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.921328 B = 8571.566864 C = 8832.532854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.089 3.911 3 H 0.076 0.924 4 N -0.680 5.680 5 C 0.126 3.874 6 C -0.214 4.214 7 C -0.095 4.095 8 C -0.166 4.166 9 C 0.112 3.888 10 C -0.463 4.463 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.793 5.793 14 Si 0.907 3.093 15 H -0.268 1.268 16 H -0.278 1.278 17 H -0.262 1.262 18 C -0.228 4.228 19 C -0.069 4.069 20 C -0.107 4.107 21 H 0.080 0.920 22 C -0.150 4.150 23 C 0.045 3.955 24 O -0.385 6.385 25 C 0.059 3.941 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.342 0.658 30 H 0.060 0.940 31 H 0.019 0.981 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.280 0.720 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 5.304 -13.448 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 H 0.094 0.906 4 N -0.310 5.310 5 C -0.002 4.002 6 C -0.216 4.216 7 C -0.114 4.114 8 C -0.186 4.186 9 C 0.110 3.890 10 C -0.493 4.493 11 H 0.095 0.905 12 C -0.142 4.142 13 N -0.418 5.418 14 Si 0.732 3.268 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.186 1.186 18 C -0.248 4.248 19 C -0.087 4.087 20 C -0.127 4.127 21 H 0.099 0.901 22 C -0.188 4.188 23 C -0.031 4.031 24 O -0.304 6.304 25 C -0.018 4.018 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.161 0.839 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.601 5.303 -13.614 15.048 hybrid contribution -1.167 -0.550 1.021 1.645 sum -4.768 4.754 -12.594 14.280 Atomic orbital electron populations 1.22521 0.97575 1.02081 1.01906 1.21586 0.92217 0.97753 0.90541 0.90570 1.60717 1.56870 1.09926 1.03530 1.20570 0.97572 0.93672 0.88369 1.18893 0.93656 1.10133 0.98878 1.20512 0.96371 0.98456 0.96080 1.21269 0.96041 1.02521 0.98742 1.17625 0.91448 0.89035 0.90919 1.19617 1.04862 1.14325 1.10483 0.90480 1.25908 0.93888 0.95381 0.98994 1.69836 1.16808 1.18968 1.36220 0.86325 0.80041 0.78020 0.82413 1.19317 1.20351 1.18618 1.20980 0.97604 1.08186 0.97995 1.20335 0.93869 0.98286 0.96248 1.22502 0.96101 1.00043 0.94021 0.90137 1.23198 0.98341 1.01487 0.95799 1.23531 0.85904 1.01156 0.92552 1.88910 1.40837 1.73550 1.27123 1.23157 0.93550 0.96321 0.88746 0.92479 0.92572 0.92414 0.83934 0.92139 0.96296 0.90022 0.86597 0.90952 0.89132 0.89479 0.90515 0.90516 0.92523 0.89465 0.88453 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.98 37.16 0.33 -1.61 16 2 C 0.09 1.09 1.85 -67.71 -0.13 0.96 16 3 H 0.08 0.97 7.79 -51.93 -0.40 0.56 16 4 N -0.68 -10.30 5.66 -107.99 -0.61 -10.91 16 5 C 0.13 2.14 5.60 -4.98 -0.03 2.11 16 6 C -0.21 -4.54 5.42 -104.33 -0.56 -5.11 16 7 C -0.10 -2.17 9.67 -39.66 -0.38 -2.56 16 8 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 9 C 0.11 3.00 5.58 -106.82 -0.60 2.40 16 10 C -0.46 -12.36 9.05 -37.74 -0.34 -12.70 16 11 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 12 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 13 N -0.79 -20.50 10.95 55.55 0.61 -19.89 16 14 Si 0.91 18.70 29.60 -169.99 -5.03 13.67 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 18 C -0.23 -5.64 9.80 -38.87 -0.38 -6.02 16 19 C -0.07 -1.54 9.67 -39.66 -0.38 -1.92 16 20 C -0.11 -1.21 2.81 -89.10 -0.25 -1.46 16 21 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 22 C -0.15 -1.37 5.75 -24.72 -0.14 -1.52 16 23 C 0.05 0.45 7.72 38.21 0.29 0.74 16 24 O -0.39 -5.23 11.54 -35.23 -0.41 -5.63 16 25 C 0.06 0.77 7.14 37.73 0.27 1.04 16 26 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 27 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 28 H 0.06 0.53 7.31 -51.93 -0.38 0.15 16 29 H 0.34 5.38 8.46 -39.29 -0.33 5.04 16 30 H 0.06 1.00 7.99 -51.93 -0.42 0.59 16 31 H 0.02 0.31 7.37 -51.93 -0.38 -0.07 16 32 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 33 H 0.12 3.10 6.15 -52.49 -0.32 2.78 16 34 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 35 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 36 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.69 7.75 -51.92 -0.40 0.29 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 1.44 7.41 -51.92 -0.38 1.05 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -27.22 338.84 -9.82 -37.04 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.77 Total: 9.05 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: -2.72 Total: -28.44 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.00 Total: -30.80 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.41 Total: -5.63 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.22 -9.82 -37.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337217674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.948 kcal (2) G-P(sol) polarization free energy of solvation -27.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds