Wall clock time and date at job start Thu Apr 9 2020 13:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47155 * 2 1 4 4 N 1.46899 * 109.46742 * 119.99552 * 2 1 3 5 5 C 1.46897 * 111.00073 * 274.99967 * 4 2 1 6 6 C 1.50702 * 109.47252 * 180.02562 * 5 4 2 7 7 C 1.38633 * 119.75075 * 269.73033 * 6 5 4 8 8 C 1.37616 * 120.24993 * 179.72058 * 7 6 5 9 9 C 1.40721 * 119.74066 * 0.52837 * 8 7 6 10 10 C 1.41401 * 120.24308 * 179.72974 * 9 8 7 11 11 H 1.08004 * 119.99796 * 204.40597 * 10 9 8 12 12 C 1.39948 * 120.00105 * 24.39752 * 10 9 8 13 13 N 1.30826 * 119.99808 * 17.85137 * 12 10 9 14 14 Si 1.86796 * 119.99978 * 197.85291 * 12 10 9 15 15 H 1.48493 * 109.47291 * 90.00346 * 14 12 10 16 16 H 1.48504 * 109.46976 * 210.00522 * 14 12 10 17 17 H 1.48494 * 109.47135 * 329.99952 * 14 12 10 18 18 C 1.40716 * 119.51407 * 359.74283 * 9 8 7 19 19 C 1.37616 * 119.74173 * 0.02562 * 18 9 8 20 20 C 1.52999 * 109.47403 * 239.99645 * 2 1 3 21 21 H 1.09000 * 110.54028 * 301.16788 * 20 2 1 22 22 C 1.54807 * 110.48674 * 63.77858 * 20 2 1 23 23 C 1.54997 * 102.09303 * 139.55709 * 22 20 2 24 24 O 1.44572 * 103.58342 * 323.05721 * 23 22 20 25 25 C 1.43741 * 106.87177 * 39.87867 * 24 23 22 26 26 H 1.08999 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47389 * 300.00753 * 1 2 3 28 28 H 1.09004 * 109.47071 * 60.00132 * 1 2 3 29 29 H 1.00896 * 111.00316 * 38.95916 * 4 2 1 30 30 H 1.09003 * 109.47532 * 300.00209 * 5 4 2 31 31 H 1.08999 * 109.47433 * 60.00279 * 5 4 2 32 32 H 1.07999 * 119.87683 * 359.97438 * 7 6 5 33 33 H 1.07995 * 120.13493 * 180.27791 * 8 7 6 34 34 H 0.97002 * 119.99660 * 179.97438 * 13 12 10 35 35 H 1.07994 * 120.12564 * 179.97438 * 18 9 8 36 36 H 1.08003 * 119.87394 * 179.97438 * 19 18 9 37 37 H 1.08998 * 110.91240 * 257.75762 * 22 20 2 38 38 H 1.09007 * 110.90912 * 21.32535 * 22 20 2 39 39 H 1.09003 * 110.61543 * 81.47762 * 23 22 20 40 40 H 1.08994 * 110.62195 * 204.47522 * 23 22 20 41 41 H 1.09008 * 109.87648 * 214.17271 * 25 24 23 42 42 H 1.09002 * 109.88192 * 93.17270 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5883 -0.5213 3.5558 7 6 1.6886 -1.1472 4.4047 8 6 2.1397 -1.8343 5.5084 9 6 3.5194 -1.8906 5.7799 10 6 3.9942 -2.5888 6.9141 11 1 4.9471 -2.3268 7.3497 12 6 3.2292 -3.6191 7.4725 13 7 2.2710 -4.1738 6.7755 14 14 3.5762 -4.2023 9.2128 15 1 2.7606 -3.4138 10.1710 16 1 3.2267 -5.6407 9.3317 17 1 5.0173 -4.0162 9.5191 18 6 4.4230 -1.2467 4.9144 19 6 3.9496 -0.5695 3.8139 20 6 2.0401 -0.7213 -1.2492 21 1 1.6695 -1.7460 -1.2772 22 6 1.6166 0.0430 -2.5270 23 6 2.8877 -0.0667 -3.4073 24 8 3.9703 0.0440 -2.4556 25 6 3.5804 -0.7033 -1.2913 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.4495 -1.4978 1.4101 30 1 2.7588 1.0464 2.1182 31 1 1.0870 0.6165 2.5525 32 1 0.6299 -1.0989 4.1968 33 1 1.4375 -2.3250 6.1660 34 1 1.7410 -4.8882 7.1624 35 1 5.4838 -1.2833 5.1135 36 1 4.6412 -0.0742 3.1485 37 1 0.7675 -0.4429 -3.0076 38 1 1.3889 1.0846 -2.2999 39 1 2.9217 -1.0313 -3.9138 40 1 2.9261 0.7487 -4.1294 41 1 3.9701 -0.2220 -0.3942 42 1 3.9612 -1.7223 -1.3601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337217674.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:37:54 Heat of formation + Delta-G solvation = -58.190418 kcal Electronic energy + Delta-G solvation = -20788.638972 eV Core-core repulsion = 17731.641877 eV Total energy + Delta-G solvation = -3056.997094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57263 -39.53037 -37.64301 -35.65865 -33.71877 -31.82182 -31.12969 -30.14659 -29.58011 -27.65625 -24.95273 -23.73146 -22.97287 -22.84842 -21.70375 -20.98155 -19.20179 -17.36628 -17.27048 -17.00909 -16.42273 -16.05911 -15.81332 -15.77439 -15.47703 -15.02281 -14.49778 -14.20419 -14.03816 -13.78552 -13.60075 -13.41566 -13.33983 -12.98700 -12.78427 -12.66554 -12.50930 -12.35015 -12.20765 -12.04135 -11.87508 -11.81162 -11.49274 -11.27673 -11.22124 -10.99035 -10.55378 -9.38589 -9.24930 -9.10262 -8.62807 -6.32023 0.96066 1.17890 1.37649 1.50678 1.51676 2.21063 2.69746 3.12838 3.31055 3.65672 3.79958 3.95109 4.02958 4.25723 4.31954 4.37603 4.39460 4.40175 4.50350 4.60584 4.65292 4.67888 4.78744 4.85914 4.90122 4.95542 5.03253 5.04850 5.08003 5.15458 5.17994 5.23764 5.37298 5.40399 5.50020 5.73167 5.96964 6.01652 6.12188 6.23505 6.29482 6.42245 6.56183 6.72627 6.96201 7.06344 8.34042 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034225 B = 0.003266 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.921328 B = 8571.566864 C = 8832.532854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.094 3.906 3 H 0.073 0.927 4 N -0.688 5.688 5 C 0.134 3.866 6 C -0.198 4.198 7 C -0.097 4.097 8 C -0.190 4.190 9 C 0.079 3.921 10 C -0.504 4.504 11 H 0.072 0.928 12 C 0.035 3.965 13 N -0.825 5.825 14 Si 0.982 3.018 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.260 1.260 18 C -0.246 4.246 19 C -0.073 4.073 20 C -0.103 4.103 21 H 0.083 0.917 22 C -0.141 4.141 23 C 0.038 3.962 24 O -0.410 6.410 25 C 0.059 3.941 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.339 0.661 30 H 0.068 0.932 31 H 0.032 0.968 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.287 0.713 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.483 5.931 -14.951 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.016 4.016 3 H 0.091 0.909 4 N -0.318 5.318 5 C 0.006 3.994 6 C -0.200 4.200 7 C -0.115 4.115 8 C -0.209 4.209 9 C 0.077 3.923 10 C -0.534 4.534 11 H 0.090 0.910 12 C -0.179 4.179 13 N -0.451 5.451 14 Si 0.802 3.198 15 H -0.187 1.187 16 H -0.192 1.192 17 H -0.184 1.184 18 C -0.265 4.265 19 C -0.092 4.092 20 C -0.123 4.123 21 H 0.101 0.899 22 C -0.179 4.179 23 C -0.038 4.038 24 O -0.330 6.330 25 C -0.018 4.018 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.157 0.843 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.790 5.944 -15.145 16.960 hybrid contribution -0.800 -0.656 1.293 1.656 sum -5.590 5.288 -13.853 15.846 Atomic orbital electron populations 1.22446 0.95958 1.02431 1.02616 1.21599 0.93404 0.97262 0.89353 0.90853 1.60617 1.57692 1.09791 1.03740 1.20449 0.98200 0.93453 0.87275 1.19341 0.92985 1.08115 0.99514 1.20767 0.97917 0.97645 0.95216 1.21249 0.95583 1.04049 1.00042 1.17958 0.92313 0.90168 0.91861 1.19838 1.05632 1.15990 1.11918 0.91016 1.26733 0.93402 0.94901 1.02891 1.69882 1.17698 1.19564 1.37953 0.85216 0.79849 0.77885 0.76821 1.18664 1.19162 1.18388 1.21167 0.97641 1.08913 0.98799 1.20633 0.95049 0.97802 0.95719 1.22462 0.94597 1.00530 0.94674 0.89850 1.23181 0.98686 1.01660 0.94339 1.23789 0.85175 1.02491 0.92357 1.88882 1.42650 1.73652 1.27799 1.23073 0.94978 0.95582 0.88174 0.92307 0.93231 0.90346 0.84269 0.91332 0.95024 0.87754 0.88311 0.90215 0.89037 0.87230 0.88222 0.90027 0.91600 0.87706 0.90517 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.98 71.98 0.65 -2.54 16 2 C 0.09 2.04 1.85 44.92 0.08 2.12 16 3 H 0.07 1.67 7.79 -2.39 -0.02 1.65 16 4 N -0.69 -19.56 5.66 -495.58 -2.81 -22.37 16 5 C 0.13 4.28 5.60 85.56 0.48 4.76 16 6 C -0.20 -8.21 5.42 -19.67 -0.11 -8.31 16 7 C -0.10 -4.39 9.67 22.22 0.21 -4.17 16 8 C -0.19 -10.07 8.70 22.73 0.20 -9.88 16 9 C 0.08 4.39 5.58 -21.29 -0.12 4.27 16 10 C -0.50 -28.01 9.05 23.46 0.21 -27.79 16 11 H 0.07 3.88 7.91 -2.91 -0.02 3.85 16 12 C 0.04 1.82 5.14 85.26 0.44 2.26 16 13 N -0.82 -43.80 10.95 21.83 0.24 -43.57 16 14 Si 0.98 38.96 29.60 68.60 2.03 40.99 16 15 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 16 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 18 C -0.25 -12.47 9.80 22.73 0.22 -12.25 16 19 C -0.07 -3.27 9.67 22.22 0.21 -3.05 16 20 C -0.10 -2.08 2.81 -9.81 -0.03 -2.11 16 21 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 22 C -0.14 -2.10 5.75 31.89 0.18 -1.92 16 23 C 0.04 0.65 7.72 72.67 0.56 1.21 16 24 O -0.41 -10.60 11.54 -148.98 -1.72 -12.32 16 25 C 0.06 1.48 7.14 72.35 0.52 2.00 16 26 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 27 H 0.05 0.98 7.45 -2.39 -0.02 0.96 16 28 H 0.08 1.12 7.31 -2.39 -0.02 1.10 16 29 H 0.34 10.05 8.46 -89.70 -0.76 9.29 16 30 H 0.07 2.10 7.99 -2.39 -0.02 2.09 16 31 H 0.03 0.94 7.37 -2.39 -0.02 0.93 16 32 H 0.10 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.10 5.50 6.15 -2.91 -0.02 5.48 16 34 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 35 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.17 7.75 -2.38 -0.02 1.15 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 2.23 7.41 -2.38 -0.02 2.21 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -60.46 338.84 1.70 -58.76 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.24 Total: 33.90 kcal Atomic # 6 Polarization: -59.12 SS G_CDS: 3.72 Total: -55.40 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -2.57 Total: -65.93 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.72 Total: -12.32 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -60.46 1.70 -58.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337217674.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.571 kcal (2) G-P(sol) polarization free energy of solvation -60.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds