Wall clock time and date at job start Thu Apr 9 2020 13:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46912 * 2 1 4 4 C 1.53004 * 109.46897 * 119.99679 * 2 1 3 5 5 H 1.09004 * 109.46985 * 304.96751 * 4 2 1 6 6 C 1.52998 * 109.47228 * 64.96188 * 4 2 1 7 7 N 1.46496 * 109.47060 * 184.96457 * 4 2 1 8 8 C 1.46494 * 120.00047 * 295.10176 * 7 4 2 9 9 C 1.34777 * 120.00041 * 115.09576 * 7 4 2 10 10 O 1.21548 * 119.99953 * 5.93430 * 9 7 4 11 11 C 1.47886 * 120.00345 * 185.92807 * 9 7 4 12 12 C 1.39922 * 120.02771 * 214.66676 * 11 9 7 13 13 C 1.38329 * 120.35562 * 179.71531 * 12 11 9 14 14 C 1.37750 * 120.41351 * 0.55730 * 13 12 11 15 15 C 1.40750 * 120.03905 * 359.71902 * 14 13 12 16 16 C 1.41437 * 120.17670 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00051 * 214.73109 * 16 15 14 18 18 C 1.39941 * 119.99825 * 34.73482 * 16 15 14 19 19 N 1.30823 * 119.99839 * 5.17943 * 18 16 15 20 20 Si 1.86798 * 119.99896 * 185.17448 * 18 16 15 21 21 H 1.48506 * 109.47285 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47357 * 119.99997 * 20 18 16 23 23 H 1.48505 * 109.47089 * 240.00346 * 20 18 16 24 24 C 1.38997 * 120.02027 * 34.93726 * 11 9 7 25 25 H 1.08996 * 109.47168 * 184.95230 * 1 2 3 26 26 H 1.08998 * 109.47341 * 304.95198 * 1 2 3 27 27 H 1.09003 * 109.46737 * 64.95164 * 1 2 3 28 28 H 1.08993 * 109.46955 * 239.99647 * 2 1 3 29 29 H 1.08997 * 109.46632 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.46731 * 299.99641 * 3 2 1 31 31 H 1.08993 * 109.47599 * 60.00041 * 3 2 1 32 32 H 1.09000 * 109.47122 * 179.97438 * 6 4 2 33 33 H 1.09004 * 109.46678 * 60.00375 * 6 4 2 34 34 H 1.08996 * 109.47394 * 300.00271 * 6 4 2 35 35 H 1.08994 * 109.47605 * 85.21555 * 8 7 4 36 36 H 1.09005 * 109.47262 * 205.21314 * 8 7 4 37 37 H 1.09004 * 109.47202 * 325.20687 * 8 7 4 38 38 H 1.08004 * 119.81594 * 359.97306 * 12 11 9 39 39 H 1.08001 * 119.79021 * 180.25954 * 13 12 11 40 40 H 1.07997 * 119.98171 * 179.74479 * 14 13 12 41 41 H 0.97000 * 119.99652 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.20694 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6058 -0.2612 2.1371 6 6 1.6344 -2.1952 1.1886 7 7 3.5001 -0.6186 1.3106 8 6 4.3233 -1.2595 0.2822 9 6 4.0861 0.0656 2.3131 10 8 3.4120 0.5055 3.2240 11 6 5.5491 0.2812 2.3050 12 6 6.2613 0.2961 3.5093 13 6 7.6308 0.4912 3.5092 14 6 8.3075 0.6846 2.3251 15 6 7.6072 0.6786 1.1042 16 6 8.2992 0.8763 -0.1133 17 1 7.8254 1.4112 -0.9231 18 6 9.5980 0.3788 -0.2687 19 7 10.1341 -0.3554 0.6721 20 14 10.5659 0.7629 -1.8195 21 1 9.7407 1.6051 -2.7223 22 1 11.8084 1.4923 -1.4596 23 1 10.9179 -0.5040 -2.5098 24 6 6.2169 0.4748 1.1014 25 1 -0.3633 -1.0238 0.0887 26 1 -0.3634 0.5887 0.8423 27 1 -0.3633 0.4351 -0.9311 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.9981 -2.7091 2.0784 33 1 2.0687 -2.6552 0.3009 34 1 0.5481 -2.2716 1.1430 35 1 4.4201 -0.5920 -0.5740 36 1 5.3115 -1.4740 0.6892 37 1 3.8509 -2.1897 -0.0338 38 1 5.7396 0.1502 4.4436 39 1 8.1721 0.4969 4.4438 40 1 9.3762 0.8404 2.3335 41 1 11.0344 -0.7000 0.5645 42 1 5.6706 0.4680 0.1698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339147056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:02 Heat of formation + Delta-G solvation = -27.385135 kcal Electronic energy + Delta-G solvation = -21753.837861 eV Core-core repulsion = 18698.176583 eV Total energy + Delta-G solvation = -3055.661277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.89465 -37.51033 -36.54380 -33.96487 -33.53618 -30.64872 -29.90456 -29.15529 -27.03710 -26.52230 -25.28037 -23.77658 -21.93173 -20.84641 -19.77472 -18.88221 -17.29827 -16.38687 -15.71558 -15.25711 -15.21096 -14.78477 -14.44578 -13.93272 -13.64522 -13.37170 -12.99665 -12.85856 -12.66318 -12.31289 -12.25289 -12.10864 -12.05010 -11.81183 -11.61926 -11.30901 -11.23474 -11.02937 -10.93019 -10.74504 -10.64299 -10.49429 -10.45496 -10.20026 -9.53043 -9.27940 -9.03354 -8.23656 -7.60524 -7.41953 -6.73147 -4.47329 2.26121 2.72044 3.06251 3.09380 3.11455 3.43420 3.69970 3.93054 4.62403 4.71284 4.94777 5.10629 5.27451 5.38347 5.46028 5.50318 5.52498 5.60091 5.69564 5.80084 5.86552 5.88230 5.94066 6.02887 6.09422 6.17833 6.25976 6.29272 6.36335 6.38809 6.48746 6.75106 6.89421 6.92682 7.04063 7.19586 7.36211 7.61096 7.79122 7.92927 7.96192 8.09940 8.50742 8.78342 8.80816 8.84904 10.23117 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.005052 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.902606 B = 5540.613386 C = 6289.562134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C -0.145 4.145 4 C 0.139 3.861 5 H 0.097 0.903 6 C -0.162 4.162 7 N -0.609 5.609 8 C 0.075 3.925 9 C 0.569 3.431 10 O -0.557 6.557 11 C -0.122 4.122 12 C -0.169 4.169 13 C -0.120 4.120 14 C -0.124 4.124 15 C 0.100 3.900 16 C -0.470 4.470 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.812 5.812 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.275 1.275 24 C -0.180 4.180 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.279 0.721 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 -2.617 -3.506 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.202 4.202 4 C 0.036 3.964 5 H 0.115 0.885 6 C -0.220 4.220 7 N -0.342 5.342 8 C -0.068 4.068 9 C 0.361 3.639 10 O -0.436 6.436 11 C -0.125 4.125 12 C -0.189 4.189 13 C -0.138 4.138 14 C -0.144 4.144 15 C 0.098 3.902 16 C -0.501 4.501 17 H 0.095 0.905 18 C -0.141 4.141 19 N -0.439 5.439 20 Si 0.736 3.264 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.200 4.200 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.821 -2.523 -2.987 11.506 hybrid contribution 0.645 -0.006 -0.796 1.025 sum -10.176 -2.529 -3.783 11.147 Atomic orbital electron populations 1.21861 0.94885 1.01762 1.01796 1.21456 0.95660 0.97002 0.98256 1.21779 1.01901 0.95302 1.01235 1.21040 0.80624 0.95648 0.99123 0.88471 1.22179 1.01407 0.96064 1.02359 1.47729 1.05775 1.53595 1.27076 1.22096 0.96726 0.96660 0.91296 1.18941 0.88561 0.76230 0.80186 1.90648 1.65793 1.51441 1.35735 1.19316 0.90407 1.07457 0.95276 1.20459 0.93918 1.09230 0.95295 1.20707 0.93615 1.02046 0.97478 1.21572 1.00190 1.01443 0.91154 1.17566 0.90438 0.88881 0.93344 1.19496 0.98335 1.32778 0.99454 0.90494 1.25814 0.97419 0.93045 0.97848 1.69750 1.15273 1.25987 1.32906 0.86219 0.79652 0.79004 0.81554 1.18593 1.19915 1.20040 1.21563 0.95449 1.08095 0.94897 0.92419 0.92587 0.92676 0.91106 0.92155 0.93066 0.92762 0.92298 0.92208 0.91519 0.92636 0.88936 0.92279 0.88435 0.88586 0.86129 0.91056 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.06 37.16 0.34 -1.09 16 2 C -0.10 -1.26 2.36 -90.61 -0.21 -1.47 16 3 C -0.14 -1.98 8.97 37.16 0.33 -1.65 16 4 C 0.14 1.96 2.23 -67.93 -0.15 1.80 16 5 H 0.10 1.56 6.91 -51.93 -0.36 1.20 16 6 C -0.16 -1.86 8.81 37.16 0.33 -1.53 16 7 N -0.61 -10.22 1.80 -175.04 -0.32 -10.53 16 8 C 0.07 1.14 8.20 59.84 0.49 1.63 16 9 C 0.57 11.85 7.26 -12.31 -0.09 11.76 16 10 O -0.56 -12.87 16.15 5.32 0.09 -12.79 16 11 C -0.12 -2.74 5.16 -105.04 -0.54 -3.28 16 12 C -0.17 -3.87 9.61 -38.92 -0.37 -4.24 16 13 C -0.12 -2.74 10.01 -39.73 -0.40 -3.14 16 14 C -0.12 -3.08 8.62 -38.81 -0.33 -3.41 16 15 C 0.10 2.50 5.50 -106.87 -0.59 1.92 16 16 C -0.47 -11.78 9.04 -37.73 -0.34 -12.12 16 17 H 0.08 1.86 7.85 -52.48 -0.41 1.45 16 18 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 19 N -0.81 -20.27 10.97 55.55 0.61 -19.66 16 20 Si 0.91 18.16 29.56 -169.99 -5.03 13.14 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 24 C -0.18 -4.10 7.34 -38.44 -0.28 -4.38 16 25 H 0.06 0.50 6.34 -51.93 -0.33 0.17 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.82 7.94 -51.93 -0.41 0.41 16 29 H 0.06 0.96 7.39 -51.93 -0.38 0.57 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 34 H 0.07 0.63 6.46 -51.93 -0.34 0.30 16 35 H 0.06 0.82 7.03 -51.93 -0.37 0.45 16 36 H 0.09 1.64 5.76 -51.93 -0.30 1.34 16 37 H 0.06 0.74 6.23 -51.93 -0.32 0.42 16 38 H 0.10 2.15 7.99 -52.48 -0.42 1.73 16 39 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 40 H 0.12 3.09 6.48 -52.49 -0.34 2.75 16 41 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 42 H 0.11 2.24 5.49 -52.49 -0.29 1.96 16 LS Contribution 332.79 15.07 5.02 5.02 Total: -1.00 -27.67 332.79 -7.83 -35.49 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.28 Total: 6.85 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.92 Total: -17.51 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 0.29 Total: -30.19 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.67 -7.83 -35.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339147056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.107 kcal (2) G-P(sol) polarization free energy of solvation -27.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds