Wall clock time and date at job start Thu Apr 9 2020 13:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47217 * 2 1 4 4 C 1.52996 * 109.46955 * 120.00298 * 2 1 3 5 5 H 1.09002 * 109.47192 * 299.99533 * 4 2 1 6 6 C 1.53008 * 109.46861 * 179.97438 * 4 2 1 7 7 N 1.46504 * 109.47219 * 60.00031 * 4 2 1 8 8 C 1.46492 * 120.00136 * 59.99813 * 7 4 2 9 9 C 1.34777 * 119.99703 * 239.99671 * 7 4 2 10 10 O 1.21545 * 120.00048 * 4.45182 * 9 7 4 11 11 C 1.47884 * 119.99942 * 184.44095 * 9 7 4 12 12 C 1.39916 * 120.02675 * 319.32408 * 11 9 7 13 13 C 1.38333 * 120.35832 * 180.25517 * 12 11 9 14 14 C 1.37753 * 120.40957 * 359.44644 * 13 12 11 15 15 C 1.40753 * 120.04180 * 0.27415 * 14 13 12 16 16 C 1.41433 * 120.18028 * 179.97438 * 15 14 13 17 17 H 1.08009 * 119.99809 * 29.18938 * 16 15 14 18 18 C 1.39932 * 120.00173 * 209.19150 * 16 15 14 19 19 N 1.30829 * 120.00344 * 11.11950 * 18 16 15 20 20 Si 1.86810 * 120.00123 * 191.11989 * 18 16 15 21 21 H 1.48505 * 109.46902 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.46961 * 119.99566 * 20 18 16 23 23 H 1.48498 * 109.47007 * 240.00063 * 20 18 16 24 24 C 1.38996 * 120.02228 * 139.02442 * 11 9 7 25 25 H 1.09000 * 109.47033 * 59.99983 * 1 2 3 26 26 H 1.09004 * 109.47426 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47251 * 300.00161 * 1 2 3 28 28 H 1.09002 * 109.46790 * 240.00078 * 2 1 3 29 29 H 1.09004 * 109.46887 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47133 * 299.99956 * 3 2 1 31 31 H 1.09002 * 109.47177 * 60.00315 * 3 2 1 32 32 H 1.09006 * 109.46571 * 179.97438 * 6 4 2 33 33 H 1.08993 * 109.47050 * 300.00042 * 6 4 2 34 34 H 1.08993 * 109.46693 * 60.00231 * 6 4 2 35 35 H 1.09006 * 109.47558 * 270.50503 * 8 7 4 36 36 H 1.09003 * 109.47103 * 30.50866 * 8 7 4 37 37 H 1.09003 * 109.47310 * 150.50761 * 8 7 4 38 38 H 1.07998 * 119.82034 * 359.97438 * 12 11 9 39 39 H 1.07990 * 119.79598 * 179.72467 * 13 12 11 40 40 H 1.07998 * 119.98263 * 180.25616 * 14 13 12 41 41 H 0.96992 * 120.00267 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.20497 * 0.05157 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5701 -0.7219 1.2488 7 7 1.5516 -2.1026 1.2491 8 6 1.9055 -3.0045 0.1504 9 6 0.7768 -2.5434 2.2600 10 8 0.4164 -1.7742 3.1294 11 6 0.3650 -3.9628 2.3112 12 6 -0.0138 -4.6247 1.1381 13 6 -0.4052 -5.9508 1.1789 14 6 -0.4159 -6.6383 2.3726 15 6 -0.0325 -5.9908 3.5621 16 6 -0.0429 -6.6937 4.7894 17 1 0.1248 -7.7607 4.8021 18 6 -0.2703 -6.0069 5.9872 19 7 -0.6863 -4.7668 5.9614 20 14 0.0202 -6.8608 7.6231 21 1 0.4850 -8.2502 7.3807 22 1 1.0525 -6.1200 8.3916 23 1 -1.2466 -6.8911 8.3974 24 6 0.3599 -4.6421 3.5238 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9333 -1.2354 2.1391 33 1 3.9330 -1.2359 0.3589 34 1 3.9337 0.3056 1.2487 35 1 1.1590 -2.9250 -0.6399 36 1 2.8836 -2.7297 -0.2446 37 1 1.9373 -4.0302 0.5181 38 1 -0.0048 -4.0961 0.1964 39 1 -0.7000 -6.4516 0.2687 40 1 -0.7188 -7.6747 2.3959 41 1 -0.8436 -4.2907 6.7916 42 1 0.6554 -4.1363 4.4312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339147057.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:03 Heat of formation + Delta-G solvation = -25.702413 kcal Electronic energy + Delta-G solvation = -21731.601697 eV Core-core repulsion = 18676.013388 eV Total energy + Delta-G solvation = -3055.588309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80641 -37.48933 -36.45208 -34.10578 -33.42014 -30.65510 -29.53491 -29.36816 -27.11501 -26.48743 -25.25618 -23.79080 -21.86788 -20.95541 -19.59405 -18.74946 -17.48785 -16.24037 -15.81232 -15.18196 -15.06698 -14.80740 -14.40160 -13.92777 -13.58984 -13.40526 -12.96113 -12.81712 -12.47625 -12.32645 -12.30397 -12.15092 -12.06168 -11.87769 -11.65297 -11.29458 -11.14028 -10.96454 -10.94540 -10.77798 -10.65622 -10.43598 -10.36232 -10.04468 -9.65553 -9.24460 -8.87896 -8.19821 -7.58159 -7.43072 -6.71065 -4.41094 2.34922 2.81846 3.09248 3.13998 3.14608 3.46987 3.73440 3.94748 4.63066 4.71068 4.95060 5.08779 5.32379 5.38227 5.47386 5.55360 5.56459 5.57734 5.67527 5.76145 5.83562 5.87751 5.92587 6.02805 6.07485 6.14454 6.17018 6.30219 6.34350 6.36386 6.47829 6.71388 6.99377 7.01210 7.09121 7.24335 7.41230 7.68882 7.80691 7.89917 8.03346 8.19042 8.52716 8.84168 8.85293 8.92931 10.22940 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024485 B = 0.004805 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.285297 B = 5826.189705 C = 6409.375949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.146 4.146 4 C 0.139 3.861 5 H 0.098 0.902 6 C -0.163 4.163 7 N -0.613 5.613 8 C 0.077 3.923 9 C 0.567 3.433 10 O -0.542 6.542 11 C -0.122 4.122 12 C -0.216 4.216 13 C -0.102 4.102 14 C -0.208 4.208 15 C 0.102 3.898 16 C -0.464 4.464 17 H 0.080 0.920 18 C 0.071 3.929 19 N -0.792 5.792 20 Si 0.911 3.089 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.274 1.274 24 C -0.096 4.096 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.282 0.718 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.204 6.683 -9.981 13.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.203 4.203 4 C 0.035 3.965 5 H 0.116 0.884 6 C -0.220 4.220 7 N -0.346 5.346 8 C -0.066 4.066 9 C 0.358 3.642 10 O -0.419 6.419 11 C -0.126 4.126 12 C -0.236 4.236 13 C -0.120 4.120 14 C -0.228 4.228 15 C 0.099 3.901 16 C -0.494 4.494 17 H 0.098 0.902 18 C -0.147 4.147 19 N -0.417 5.417 20 Si 0.735 3.265 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.199 1.199 24 C -0.116 4.116 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.932 7.285 -9.338 13.246 hybrid contribution -0.019 -0.351 0.628 0.720 sum 5.913 6.934 -8.710 12.605 Atomic orbital electron populations 1.21764 0.94806 1.02235 1.01251 1.21433 0.96502 0.96077 0.98214 1.21866 1.00954 0.95681 1.01838 1.21037 0.93428 0.82792 0.99221 0.88395 1.22196 0.95542 1.02021 1.02290 1.47773 1.51898 1.11346 1.23632 1.22049 0.99210 0.95852 0.89504 1.18979 0.76629 0.88717 0.79844 1.90697 1.55177 1.57351 1.38656 1.19445 1.06137 0.91431 0.95553 1.20623 1.11994 0.95333 0.95674 1.20459 1.00626 0.94329 0.96604 1.21151 1.08769 0.99548 0.93300 1.17579 0.88336 0.91621 0.92538 1.19589 1.43585 0.95849 0.90355 0.90216 1.25940 0.92557 0.94753 1.01420 1.69790 1.31557 1.10308 1.30020 0.86222 0.78825 0.80420 0.81026 1.18448 1.19738 1.19931 1.21523 0.99807 0.95324 0.94948 0.93196 0.92441 0.92590 0.91237 0.92382 0.92739 0.92510 0.92247 0.92426 0.91530 0.93262 0.92374 0.89055 0.88293 0.88911 0.88656 0.90639 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.04 37.16 0.34 -1.58 16 2 C -0.10 -1.23 2.37 -90.62 -0.21 -1.44 16 3 C -0.15 -1.42 8.84 37.15 0.33 -1.09 16 4 C 0.14 2.01 2.23 -67.93 -0.15 1.86 16 5 H 0.10 1.67 6.91 -51.93 -0.36 1.31 16 6 C -0.16 -1.93 8.82 37.16 0.33 -1.61 16 7 N -0.61 -10.41 2.00 -175.03 -0.35 -10.76 16 8 C 0.08 1.08 7.96 59.84 0.48 1.55 16 9 C 0.57 12.55 7.33 -12.31 -0.09 12.46 16 10 O -0.54 -13.80 16.27 5.33 0.09 -13.71 16 11 C -0.12 -2.90 5.18 -105.04 -0.54 -3.44 16 12 C -0.22 -4.55 7.50 -38.92 -0.29 -4.84 16 13 C -0.10 -2.16 10.01 -39.72 -0.40 -2.56 16 14 C -0.21 -4.93 9.78 -38.81 -0.38 -5.31 16 15 C 0.10 2.69 5.54 -106.87 -0.59 2.10 16 16 C -0.46 -12.26 9.06 -37.73 -0.34 -12.60 16 17 H 0.08 2.00 7.87 -52.48 -0.41 1.59 16 18 C 0.07 1.82 5.24 -17.34 -0.09 1.73 16 19 N -0.79 -21.42 10.89 55.55 0.60 -20.81 16 20 Si 0.91 18.97 29.57 -169.99 -5.03 13.95 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 C -0.10 -2.55 8.25 -38.44 -0.32 -2.87 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.88 7.61 -51.93 -0.39 0.48 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.77 7.67 -51.93 -0.40 0.37 16 29 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.61 6.66 -51.93 -0.35 0.26 16 34 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 35 H 0.05 0.63 7.20 -51.93 -0.37 0.26 16 36 H 0.06 0.66 6.42 -51.93 -0.33 0.33 16 37 H 0.09 1.43 5.51 -51.93 -0.29 1.15 16 38 H 0.10 1.79 5.59 -52.49 -0.29 1.50 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 41 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 42 H 0.13 3.67 6.26 -52.49 -0.33 3.34 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -29.57 332.86 -7.90 -37.47 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.29 Total: 6.48 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -1.94 Total: -17.63 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.26 Total: -31.57 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.57 -7.90 -37.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339147057.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.767 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds