Wall clock time and date at job start Thu Apr 9 2020 13:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35900 * 117.00444 * 2 1 4 4 C 1.38729 * 120.05331 * 359.97438 * 3 2 1 5 5 C 1.38143 * 119.94428 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05418 * 0.02562 * 5 4 3 7 7 C 1.50710 * 119.94298 * 179.97438 * 6 5 4 8 8 N 1.46905 * 115.54656 * 308.88936 * 7 6 5 9 9 C 1.46890 * 110.99890 * 294.66956 * 8 7 6 10 10 C 1.53000 * 109.47206 * 177.33843 * 9 8 7 11 11 C 1.53002 * 109.47603 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47180 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99844 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00060 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99941 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00040 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47247 * 60.00597 * 16 14 12 18 18 H 1.48504 * 109.47050 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47536 * 300.00136 * 16 14 12 20 20 C 1.52995 * 117.49688 * 163.18309 * 7 6 5 21 21 C 1.53000 * 117.49840 * 94.56010 * 7 6 5 22 22 C 1.38265 * 120.11593 * 0.02562 * 6 5 4 23 23 C 1.38138 * 120.05192 * 359.97438 * 22 6 5 24 24 H 1.08995 * 109.46912 * 300.00131 * 1 2 3 25 25 H 1.09004 * 109.46736 * 59.99628 * 1 2 3 26 26 H 1.09000 * 109.47106 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.02883 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.97389 * 180.27603 * 5 4 3 29 29 H 1.00905 * 110.99401 * 170.71648 * 8 7 6 30 30 H 1.09007 * 109.47533 * 297.33573 * 9 8 7 31 31 H 1.09001 * 109.47734 * 57.34131 * 9 8 7 32 32 H 1.09000 * 109.47298 * 300.00301 * 10 9 8 33 33 H 1.09001 * 109.47281 * 59.99544 * 10 9 8 34 34 H 1.08998 * 109.46988 * 299.99865 * 11 10 9 35 35 H 1.09003 * 109.46791 * 59.99708 * 11 10 9 36 36 H 0.96997 * 120.00533 * 179.97438 * 15 14 12 37 37 H 1.08994 * 117.50290 * 359.97438 * 20 7 6 38 38 H 1.09005 * 117.49619 * 145.02353 * 20 7 6 39 39 H 1.09004 * 117.49657 * 214.98027 * 21 7 6 40 40 H 1.08996 * 117.49947 * 359.97438 * 21 7 6 41 41 H 1.08002 * 119.97536 * 179.97438 * 22 6 5 42 42 H 1.08002 * 120.03010 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3751 -0.0005 5 6 1.9212 3.6047 0.0000 6 6 3.3020 3.6756 0.0005 7 6 3.9863 5.0184 0.0005 8 7 3.5329 5.9605 -1.0315 9 6 3.8626 5.4677 -2.3754 10 6 3.3176 6.4403 -3.4232 11 6 3.6603 5.9268 -4.8231 12 6 3.1229 6.8845 -5.8551 13 1 2.5905 7.7711 -5.5436 14 6 3.3118 6.6295 -7.1969 15 7 3.9605 5.5502 -7.5761 16 14 2.6463 7.8170 -8.4760 17 1 3.2588 9.1549 -8.2755 18 1 2.9800 7.3191 -9.8347 19 1 1.1718 7.9215 -8.3348 20 6 5.4643 5.0581 0.3938 21 6 4.4026 5.5991 1.3534 22 6 4.0562 2.5168 0.0000 23 6 3.4314 1.2848 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2130 2.3202 -0.0014 28 1 1.3344 4.5114 0.0041 29 1 3.9209 6.8792 -0.8779 30 1 4.9450 5.3911 -2.4791 31 1 3.4131 4.4857 -2.5228 32 1 2.2352 6.5170 -3.3197 33 1 3.7670 7.4224 -3.2759 34 1 4.7426 5.8499 -4.9270 35 1 3.2105 4.9448 -4.9701 36 1 4.0931 5.3705 -8.5200 37 1 5.9417 4.1131 0.6529 38 1 6.1007 5.7833 -0.1134 39 1 4.3405 6.6803 1.4776 40 1 4.1813 5.0102 2.2435 41 1 5.1347 2.5748 0.0000 42 1 4.0209 0.3798 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341656330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:05 Heat of formation + Delta-G solvation = 1.213950 kcal Electronic energy + Delta-G solvation = -20608.272310 eV Core-core repulsion = 17553.851182 eV Total energy + Delta-G solvation = -3054.421128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33531 -38.90790 -36.64237 -34.68760 -32.69684 -31.15902 -30.19707 -29.91609 -27.44959 -25.97842 -23.23854 -23.05058 -22.28213 -21.92582 -20.06850 -19.59673 -18.22982 -16.39942 -16.24870 -16.03970 -15.83231 -15.45004 -14.83594 -14.48551 -14.28443 -13.79975 -13.72000 -13.41844 -13.29586 -12.73578 -12.27520 -12.19123 -11.98524 -11.90923 -11.48159 -11.37577 -11.31189 -10.92374 -10.85405 -10.61848 -10.53755 -10.47781 -10.21365 -9.64099 -9.30022 -9.02765 -8.98220 -8.30734 -8.13347 -8.03437 -5.95896 -3.98105 1.34076 1.41876 3.17680 3.35805 3.39843 3.42538 3.60701 3.82543 4.31576 4.49620 4.60492 4.75774 4.81646 4.88645 4.98915 5.03738 5.05323 5.28748 5.34211 5.39617 5.44237 5.57073 5.60270 5.69366 5.82469 5.85363 5.98787 6.02098 6.07208 6.26806 6.36713 6.38523 6.63201 6.72526 6.75622 6.84022 7.17304 7.32340 7.35234 7.61680 7.72481 7.88113 8.04659 8.47664 9.08926 9.65543 11.15513 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.003851 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.678080 B = 7268.316319 C = 8441.344837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.210 4.210 5 C -0.047 4.047 6 C -0.073 4.073 7 C 0.100 3.900 8 N -0.649 5.649 9 C 0.064 3.936 10 C -0.106 4.106 11 C 0.023 3.977 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.216 4.216 21 C -0.165 4.165 22 C -0.075 4.075 23 C -0.153 4.153 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.097 0.903 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.342 0.658 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 -7.515 20.038 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.078 3.922 4 C -0.228 4.228 5 C -0.066 4.066 6 C -0.074 4.074 7 C 0.008 3.992 8 N -0.278 5.278 9 C -0.064 4.064 10 C -0.144 4.144 11 C -0.014 4.014 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.256 4.256 21 C -0.202 4.202 22 C -0.094 4.094 23 C -0.172 4.172 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.160 0.840 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.146 0.854 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.096 -8.035 19.835 21.623 hybrid contribution 0.420 0.923 -0.884 1.345 sum -2.676 -7.112 18.951 20.418 Atomic orbital electron populations 1.23041 0.78495 1.03745 1.01485 1.86044 1.21335 1.27152 1.88856 1.19046 0.92372 0.84085 0.96715 1.21240 1.00001 0.92285 1.09297 1.20786 0.93891 0.97083 0.94804 1.18673 0.93208 0.91750 1.03734 1.20051 0.92953 0.92258 0.93949 1.60305 1.62144 1.03679 1.01681 1.22090 0.97900 0.99971 0.86476 1.21622 1.00224 0.96909 0.95646 1.19046 0.96671 0.96491 0.89231 1.21221 1.35573 1.07885 0.91083 0.92750 1.25026 0.95358 0.95407 0.98685 1.69958 1.41640 1.25938 1.16036 0.86662 0.79457 0.81314 0.80588 1.20284 1.21314 1.20238 1.23654 0.93533 1.03383 1.05034 1.23169 1.02706 1.01008 0.93361 1.20856 0.99911 0.90919 0.97693 1.20323 0.91340 0.98382 1.07161 0.92754 0.92452 0.88412 0.85511 0.85068 0.83998 0.95564 0.91330 0.92640 0.93716 0.96831 0.96617 0.92999 0.88548 0.88662 0.88484 0.88450 0.85371 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.86 10.50 -19.43 -0.20 -4.06 16 3 C 0.12 1.59 6.69 -39.22 -0.26 1.33 16 4 C -0.21 -2.61 9.04 -39.43 -0.36 -2.96 16 5 C -0.05 -0.63 9.62 -39.61 -0.38 -1.01 16 6 C -0.07 -0.98 4.56 -104.60 -0.48 -1.46 16 7 C 0.10 1.30 2.05 -132.75 -0.27 1.02 16 8 N -0.65 -9.62 6.54 -101.14 -0.66 -10.28 16 9 C 0.06 1.14 5.56 -3.83 -0.02 1.12 16 10 C -0.11 -2.25 5.44 -26.73 -0.15 -2.39 16 11 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 12 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 13 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 16 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.22 -2.44 9.69 -26.73 -0.26 -2.70 16 21 C -0.16 -1.74 9.99 -26.73 -0.27 -2.01 16 22 C -0.08 -0.95 9.32 -39.61 -0.37 -1.32 16 23 C -0.15 -1.93 9.99 -39.43 -0.39 -2.33 16 24 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 25 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.13 1.30 6.30 -52.49 -0.33 0.97 16 28 H 0.13 1.72 8.06 -52.48 -0.42 1.29 16 29 H 0.34 4.65 8.64 -39.29 -0.34 4.31 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 1.33 7.50 -51.93 -0.39 0.94 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.10 0.99 6.43 -51.93 -0.33 0.65 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.13 1.41 6.28 -52.49 -0.33 1.08 16 42 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -31.74 348.39 -9.37 -41.12 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.71 Total: 2.56 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -2.76 Total: -24.83 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.08 Total: -37.02 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.20 Total: -4.06 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.74 -9.37 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341656330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.331 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds