Wall clock time and date at job start Thu Apr 9 2020 13:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35900 * 117.00444 * 2 1 4 4 C 1.38729 * 120.05331 * 359.97438 * 3 2 1 5 5 C 1.38143 * 119.94428 * 179.97438 * 4 3 2 6 6 C 1.38263 * 120.05418 * 0.02562 * 5 4 3 7 7 C 1.50710 * 119.94298 * 179.97438 * 6 5 4 8 8 N 1.46905 * 115.54656 * 308.88936 * 7 6 5 9 9 C 1.46890 * 110.99890 * 294.66956 * 8 7 6 10 10 C 1.53000 * 109.47206 * 177.33843 * 9 8 7 11 11 C 1.53002 * 109.47603 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47180 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99844 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00060 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99941 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00040 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47247 * 60.00597 * 16 14 12 18 18 H 1.48504 * 109.47050 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47536 * 300.00136 * 16 14 12 20 20 C 1.52995 * 117.49688 * 163.18309 * 7 6 5 21 21 C 1.53000 * 117.49840 * 94.56010 * 7 6 5 22 22 C 1.38265 * 120.11593 * 0.02562 * 6 5 4 23 23 C 1.38138 * 120.05192 * 359.97438 * 22 6 5 24 24 H 1.08995 * 109.46912 * 300.00131 * 1 2 3 25 25 H 1.09004 * 109.46736 * 59.99628 * 1 2 3 26 26 H 1.09000 * 109.47106 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.02883 * 359.97438 * 4 3 2 28 28 H 1.08005 * 119.97389 * 180.27603 * 5 4 3 29 29 H 1.00905 * 110.99401 * 170.71648 * 8 7 6 30 30 H 1.09007 * 109.47533 * 297.33573 * 9 8 7 31 31 H 1.09001 * 109.47734 * 57.34131 * 9 8 7 32 32 H 1.09000 * 109.47298 * 300.00301 * 10 9 8 33 33 H 1.09001 * 109.47281 * 59.99544 * 10 9 8 34 34 H 1.08998 * 109.46988 * 299.99865 * 11 10 9 35 35 H 1.09003 * 109.46791 * 59.99708 * 11 10 9 36 36 H 0.96997 * 120.00533 * 179.97438 * 15 14 12 37 37 H 1.08994 * 117.50290 * 359.97438 * 20 7 6 38 38 H 1.09005 * 117.49619 * 145.02353 * 20 7 6 39 39 H 1.09004 * 117.49657 * 214.98027 * 21 7 6 40 40 H 1.08996 * 117.49947 * 359.97438 * 21 7 6 41 41 H 1.08002 * 119.97536 * 179.97438 * 22 6 5 42 42 H 1.08002 * 120.03010 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3751 -0.0005 5 6 1.9212 3.6047 0.0000 6 6 3.3020 3.6756 0.0005 7 6 3.9863 5.0184 0.0005 8 7 3.5329 5.9605 -1.0315 9 6 3.8626 5.4677 -2.3754 10 6 3.3176 6.4403 -3.4232 11 6 3.6603 5.9268 -4.8231 12 6 3.1229 6.8845 -5.8551 13 1 2.5905 7.7711 -5.5436 14 6 3.3118 6.6295 -7.1969 15 7 3.9605 5.5502 -7.5761 16 14 2.6463 7.8170 -8.4760 17 1 3.2588 9.1549 -8.2755 18 1 2.9800 7.3191 -9.8347 19 1 1.1718 7.9215 -8.3348 20 6 5.4643 5.0581 0.3938 21 6 4.4026 5.5991 1.3534 22 6 4.0562 2.5168 0.0000 23 6 3.4314 1.2848 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2130 2.3202 -0.0014 28 1 1.3344 4.5114 0.0041 29 1 3.9209 6.8792 -0.8779 30 1 4.9450 5.3911 -2.4791 31 1 3.4131 4.4857 -2.5228 32 1 2.2352 6.5170 -3.3197 33 1 3.7670 7.4224 -3.2759 34 1 4.7426 5.8499 -4.9270 35 1 3.2105 4.9448 -4.9701 36 1 4.0931 5.3705 -8.5200 37 1 5.9417 4.1131 0.6529 38 1 6.1007 5.7833 -0.1134 39 1 4.3405 6.6803 1.4776 40 1 4.1813 5.0102 2.2435 41 1 5.1347 2.5748 0.0000 42 1 4.0209 0.3798 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341656330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:05 Heat of formation + Delta-G solvation = -17.587279 kcal Electronic energy + Delta-G solvation = -20609.087593 eV Core-core repulsion = 17553.851182 eV Total energy + Delta-G solvation = -3055.236410 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26448 -39.86201 -37.64958 -36.35894 -34.59466 -32.23029 -31.82361 -30.83155 -28.23432 -27.83360 -24.63863 -24.05181 -23.63923 -22.84591 -21.82130 -20.63855 -19.12183 -18.48466 -17.21950 -17.16939 -16.69580 -16.58610 -16.48030 -15.80854 -15.62032 -15.15230 -14.68866 -14.41305 -14.35038 -14.18352 -13.77610 -13.60887 -13.49140 -12.87809 -12.80056 -12.73475 -12.49240 -12.32975 -12.28620 -12.13562 -11.81745 -11.74502 -11.48910 -11.37808 -11.27727 -10.94145 -10.55180 -9.94897 -9.28374 -9.00592 -8.19831 -6.31472 0.38073 0.43636 1.39814 1.43374 1.51309 2.37947 2.40949 2.66329 2.79882 3.13013 3.30390 3.65756 3.83647 3.92422 3.99679 4.08646 4.28602 4.32172 4.38627 4.41812 4.43936 4.51954 4.64345 4.68992 4.72191 4.75205 4.79389 4.95610 4.98964 5.08987 5.13274 5.21545 5.23512 5.32447 5.40863 5.51372 5.66329 5.74069 5.79780 5.85228 6.07237 6.26392 6.43238 6.49173 6.85269 7.37833 8.92020 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.003851 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.678080 B = 7268.316319 C = 8441.344837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.112 3.888 4 C -0.213 4.213 5 C -0.062 4.062 6 C -0.085 4.085 7 C 0.077 3.923 8 N -0.647 5.647 9 C 0.083 3.917 10 C -0.091 4.091 11 C 0.027 3.973 12 C -0.544 4.544 13 H 0.061 0.939 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.212 4.212 21 C -0.144 4.144 22 C -0.081 4.081 23 C -0.164 4.164 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.120 0.880 27 H 0.144 0.856 28 H 0.130 0.870 29 H 0.350 0.650 30 H 0.022 0.978 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.053 0.947 34 H -0.010 1.010 35 H -0.014 1.014 36 H 0.264 0.736 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 -6.673 20.910 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.067 3.933 4 C -0.232 4.232 5 C -0.081 4.081 6 C -0.086 4.086 7 C -0.015 4.015 8 N -0.277 5.277 9 C -0.046 4.046 10 C -0.129 4.129 11 C -0.011 4.011 12 C -0.582 4.582 13 H 0.079 0.921 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.251 4.251 21 C -0.181 4.181 22 C -0.100 4.100 23 C -0.183 4.183 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.139 0.861 27 H 0.162 0.838 28 H 0.147 0.853 29 H 0.170 0.830 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.008 0.992 35 H 0.005 0.995 36 H 0.072 0.928 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.160 0.840 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.572 -7.185 20.736 22.234 hybrid contribution 0.551 0.590 -1.120 1.381 sum -3.021 -6.595 19.616 20.914 Atomic orbital electron populations 1.23322 0.76639 1.05530 1.02085 1.86025 1.23333 1.26793 1.88755 1.19234 0.92756 0.84599 0.96760 1.21442 1.01009 0.91917 1.08803 1.20901 0.94183 0.97400 0.95574 1.18842 0.93422 0.92299 1.04033 1.20106 0.94420 0.92100 0.94860 1.60159 1.62620 1.04486 1.00433 1.21675 0.97084 0.98105 0.87721 1.21364 1.00094 0.97840 0.93556 1.18942 0.94717 0.95016 0.92385 1.21670 1.35901 1.08508 0.92147 0.92113 1.26011 0.95427 0.97262 1.01184 1.70100 1.42763 1.27887 1.16710 0.85482 0.79105 0.78995 0.77361 1.19011 1.20781 1.19163 1.23693 0.92597 1.03984 1.04863 1.23247 1.00695 1.01821 0.92385 1.21044 1.00649 0.90748 0.97524 1.20587 0.91702 0.98970 1.06997 0.91466 0.92486 0.86147 0.83787 0.85252 0.83045 0.95968 0.93107 0.92988 0.92778 0.99163 0.99536 0.92771 0.87520 0.88731 0.87274 0.87363 0.84046 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -7.85 10.50 -92.43 -0.97 -8.82 16 3 C 0.11 2.85 6.69 22.51 0.15 3.00 16 4 C -0.21 -5.22 9.04 22.36 0.20 -5.02 16 5 C -0.06 -1.65 9.62 22.25 0.21 -1.44 16 6 C -0.09 -2.24 4.56 -19.85 -0.09 -2.33 16 7 C 0.08 1.90 2.05 2.78 0.01 1.91 16 8 N -0.65 -18.61 6.54 -473.89 -3.10 -21.71 16 9 C 0.08 3.00 5.56 86.31 0.48 3.48 16 10 C -0.09 -3.87 5.44 30.60 0.17 -3.70 16 11 C 0.03 1.48 4.97 29.85 0.15 1.63 16 12 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 13 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 14 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 15 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 16 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 C -0.21 -4.38 9.69 30.59 0.30 -4.09 16 21 C -0.14 -2.71 9.99 30.59 0.31 -2.40 16 22 C -0.08 -2.01 9.32 22.25 0.21 -1.80 16 23 C -0.16 -4.08 9.99 22.37 0.22 -3.85 16 24 H 0.07 0.84 7.66 -2.39 -0.02 0.82 16 25 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 26 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.14 2.85 6.30 -2.91 -0.02 2.83 16 28 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 29 H 0.35 9.00 8.64 -89.69 -0.77 8.22 16 30 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 2.02 7.50 -2.39 -0.02 2.00 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 36 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.11 1.98 6.43 -2.39 -0.02 1.96 16 38 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 40 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.14 2.96 6.28 -2.91 -0.02 2.95 16 42 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -68.42 348.39 2.58 -65.83 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.22 Total: 20.09 kcal Atomic # 6 Polarization: -48.58 SS G_CDS: 4.12 Total: -44.47 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -2.81 Total: -79.63 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.97 Total: -8.82 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -68.42 2.58 -65.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341656330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.245 kcal (2) G-P(sol) polarization free energy of solvation -68.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds