Wall clock time and date at job start Thu Apr 9 2020 13:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53006 * 109.46846 * 65.00509 * 4 2 1 6 6 C 1.50701 * 109.47024 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00074 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99965 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99736 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.46978 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.47441 * 180.02562 * 10 9 8 12 12 H 1.08006 * 119.99590 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00475 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99666 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00478 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47284 * 89.99414 * 15 13 11 17 17 H 1.48498 * 109.47012 * 209.99846 * 15 13 11 18 18 H 1.48506 * 109.46576 * 329.99672 * 15 13 11 19 19 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 20 20 C 1.38237 * 119.99747 * 59.72563 * 19 2 1 21 21 C 1.38240 * 119.99788 * 179.81066 * 20 19 2 22 22 C 1.38236 * 119.99657 * 0.39831 * 21 20 19 23 23 C 1.38230 * 120.00403 * 359.85459 * 22 21 20 24 24 C 1.38232 * 120.00112 * 240.00114 * 19 2 1 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 30 30 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 31 31 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 32 32 H 0.97002 * 119.99484 * 0.02562 * 8 6 5 33 33 H 1.09000 * 109.47590 * 300.00511 * 9 8 6 34 34 H 1.09001 * 109.47111 * 60.00822 * 9 8 6 35 35 H 1.09000 * 109.47254 * 300.00566 * 10 9 8 36 36 H 1.09001 * 109.46896 * 59.99897 * 10 9 8 37 37 H 0.96998 * 120.00041 * 179.97438 * 14 13 11 38 38 H 1.08003 * 120.00234 * 0.02562 * 20 19 2 39 39 H 1.07995 * 119.99993 * 180.23158 * 21 20 19 40 40 H 1.08005 * 119.99783 * 179.83592 * 22 21 20 41 41 H 1.08000 * 120.00473 * 179.97438 * 23 22 21 42 42 H 1.08005 * 119.99991 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6354 0.0689 -2.4953 6 6 2.1383 -0.6412 -3.7257 7 8 2.7588 -1.6775 -3.6167 8 7 1.8975 -0.1252 -4.9473 9 6 2.3869 -0.8152 -6.1433 10 6 1.9821 -0.0251 -7.3895 11 6 2.4849 -0.7352 -8.6199 12 1 3.0383 -1.6576 -8.5227 13 6 2.2396 -0.2069 -9.8695 14 7 1.5662 0.9166 -9.9877 15 14 2.8622 -1.0875 -11.3947 16 1 1.8307 -2.0443 -11.8697 17 1 3.1429 -0.0925 -12.4608 18 1 4.1082 -1.8256 -11.0660 19 6 2.0323 -0.7104 1.2305 20 6 1.6936 -2.0322 1.4521 21 6 2.1576 -2.6850 2.5788 22 6 2.9535 -2.0136 3.4881 23 6 3.2878 -0.6903 3.2691 24 6 2.8270 -0.0386 2.1405 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 0.5490 0.1471 -2.5390 31 1 2.0700 1.0675 -2.4494 32 1 1.4009 0.7035 -5.0344 33 1 3.4733 -0.8924 -6.0994 34 1 1.9532 -1.8142 -6.1894 35 1 0.8958 0.0524 -7.4336 36 1 2.4160 0.9737 -7.3431 37 1 1.3938 1.2886 -10.8668 38 1 1.0694 -2.5559 0.7432 39 1 1.8961 -3.7187 2.7501 40 1 3.3138 -2.5228 4.3697 41 1 3.9092 -0.1656 3.9797 42 1 3.0883 0.9953 1.9693 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342668381.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:06 Heat of formation + Delta-G solvation = -67.723399 kcal Electronic energy + Delta-G solvation = -19885.105065 eV Core-core repulsion = 16827.694589 eV Total energy + Delta-G solvation = -3057.410476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84056 -40.20020 -37.00278 -36.41909 -34.80669 -32.56288 -31.74910 -31.31741 -29.67474 -27.14429 -25.77231 -23.87538 -23.28457 -22.69645 -21.33567 -20.59596 -18.61604 -18.12860 -17.49127 -16.87830 -16.66926 -16.45214 -16.12700 -15.86354 -15.42445 -14.90466 -14.61519 -14.42777 -14.28540 -14.13911 -14.07720 -13.50930 -13.22492 -13.10262 -12.94195 -12.74379 -12.52414 -12.44924 -12.22228 -12.07983 -11.81891 -11.67203 -11.49970 -11.46748 -11.35599 -10.77297 -10.61164 -9.98474 -9.77365 -9.54416 -8.25087 -6.35541 0.50336 0.54582 1.41040 1.41432 1.52984 1.72432 2.30336 2.47961 2.93426 3.09432 3.71154 3.78914 3.94279 4.17490 4.19020 4.24705 4.33201 4.40711 4.46872 4.51920 4.58563 4.60394 4.69721 4.72949 4.76375 4.85247 5.04778 5.07629 5.10636 5.22325 5.24355 5.30570 5.40081 5.44094 5.51761 5.57829 5.64037 5.67194 5.78563 5.81031 6.15962 6.17996 6.68825 6.77657 7.33748 7.35286 8.86643 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.045731 B = 0.002390 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.133162 B =11712.798815 C =11977.143760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 H 0.094 0.906 4 C -0.087 4.087 5 C -0.130 4.130 6 C 0.499 3.501 7 O -0.597 6.597 8 N -0.720 5.720 9 C 0.139 3.861 10 C 0.023 3.977 11 C -0.548 4.548 12 H 0.057 0.943 13 C 0.007 3.993 14 N -0.925 5.925 15 Si 0.965 3.035 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.268 1.268 19 C -0.085 4.085 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.128 4.128 24 C -0.130 4.130 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.412 0.588 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.009 0.991 36 H 0.009 0.991 37 H 0.266 0.734 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 0.714 26.580 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 H 0.112 0.888 4 C -0.126 4.126 5 C -0.170 4.170 6 C 0.288 3.712 7 O -0.478 6.478 8 N -0.371 5.371 9 C 0.015 3.985 10 C -0.014 4.014 11 C -0.587 4.587 12 H 0.075 0.925 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.192 1.192 19 C -0.085 4.085 20 C -0.148 4.148 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.146 4.146 24 C -0.148 4.148 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.248 0.752 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.552 0.110 26.516 26.562 hybrid contribution 0.122 -0.182 -1.183 1.204 sum -1.429 -0.072 25.333 25.373 Atomic orbital electron populations 1.21915 0.93342 1.02237 1.02767 1.20171 0.96709 0.99322 0.90233 0.88755 1.21286 1.00554 0.98622 0.92094 1.21787 1.04401 1.00902 0.89874 1.21610 0.78806 0.84976 0.85798 1.90653 1.43260 1.26340 1.87583 1.46210 1.57101 1.28058 1.05755 1.21178 0.97435 0.95555 0.84298 1.19128 0.96104 0.95074 0.91115 1.21475 1.35935 1.09087 0.92178 0.92518 1.25872 0.95140 0.95715 1.02473 1.70052 1.40959 1.20607 1.24874 0.85448 0.78935 0.78310 0.78374 1.19720 1.20394 1.19196 1.20061 0.97609 0.94448 0.96403 1.21207 1.00746 0.94875 0.98001 1.21418 0.98228 1.00649 0.94681 1.21438 0.98688 0.95234 1.00051 1.21452 1.00030 0.95205 0.97893 1.21361 0.98030 1.00785 0.94603 0.92960 0.92037 0.90732 0.93216 0.92659 0.86159 0.86271 0.75207 0.93985 0.93910 0.97226 0.97245 0.92502 0.86210 0.84960 0.84445 0.84259 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.76 71.98 0.63 -1.38 16 2 C -0.05 -0.74 2.56 -11.54 -0.03 -0.77 16 3 H 0.09 1.24 7.88 -2.39 -0.02 1.23 16 4 C -0.09 -1.89 3.72 30.60 0.11 -1.78 16 5 C -0.13 -2.66 5.46 29.85 0.16 -2.49 16 6 C 0.50 16.26 7.83 87.66 0.69 16.94 16 7 O -0.60 -24.98 15.98 -3.03 -0.05 -25.03 16 8 N -0.72 -24.57 5.56 -463.06 -2.57 -27.14 16 9 C 0.14 6.09 5.61 86.38 0.48 6.57 16 10 C 0.02 1.18 5.09 29.85 0.15 1.33 16 11 C -0.55 -30.92 9.11 25.60 0.23 -30.69 16 12 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 13 C 0.01 0.39 5.46 84.65 0.46 0.85 16 14 N -0.93 -54.24 13.29 21.45 0.28 -53.95 16 15 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 C -0.09 -1.58 4.78 -19.87 -0.09 -1.68 16 20 C -0.13 -2.53 8.76 22.27 0.20 -2.34 16 21 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 22 C -0.14 -2.15 10.05 22.27 0.22 -1.93 16 23 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 24 C -0.13 -2.18 9.67 22.27 0.22 -1.96 16 25 H 0.05 0.79 7.38 -2.39 -0.02 0.77 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.86 6.57 -2.39 -0.02 0.84 16 28 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 29 H 0.05 1.37 7.54 -2.39 -0.02 1.35 16 30 H 0.12 1.87 6.57 -2.39 -0.02 1.85 16 31 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.41 11.64 8.47 -92.71 -0.79 10.85 16 33 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.12 2.26 7.16 -2.91 -0.02 2.23 16 39 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 41 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 42 H 0.14 1.75 7.95 -2.91 -0.02 1.73 16 Total: -1.00 -69.88 349.31 3.78 -66.10 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.21 Total: 17.37 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 3.88 Total: -23.19 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -2.29 Total: -81.09 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -69.88 3.78 -66.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342668381.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.619 kcal (2) G-P(sol) polarization free energy of solvation -69.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds