Wall clock time and date at job start Thu Apr 9 2020 13:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 C 1.50703 * 109.47215 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99732 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99951 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99800 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47064 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.47215 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00153 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00005 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00132 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00105 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46990 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47327 * 120.00296 * 15 13 11 18 18 H 1.48509 * 109.47303 * 240.00541 * 15 13 11 19 19 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 20 20 C 1.38237 * 119.99936 * 299.72798 * 19 2 1 21 21 C 1.38239 * 120.00019 * 179.79019 * 20 19 2 22 22 C 1.38233 * 119.99539 * 0.43796 * 21 20 19 23 23 C 1.38231 * 120.00493 * 359.81540 * 22 21 20 24 24 C 1.38236 * 119.99974 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 26 26 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 28 28 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 29 29 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 30 30 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 31 31 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 32 32 H 0.96998 * 120.00136 * 0.02562 * 8 6 5 33 33 H 1.09006 * 109.47268 * 299.99853 * 9 8 6 34 34 H 1.09000 * 109.47553 * 59.99939 * 9 8 6 35 35 H 1.08998 * 109.46849 * 299.99599 * 10 9 8 36 36 H 1.09000 * 109.47218 * 60.00001 * 10 9 8 37 37 H 0.97006 * 120.00368 * 179.97438 * 14 13 11 38 38 H 1.07998 * 120.00490 * 359.97438 * 20 19 2 39 39 H 1.08000 * 120.00241 * 180.27418 * 21 20 19 40 40 H 1.08006 * 119.99896 * 179.83904 * 22 21 20 41 41 H 1.08002 * 120.00573 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.00273 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 6 2.1382 -0.6411 3.7258 7 8 2.7588 -1.6774 3.6168 8 7 1.8983 -0.1245 4.9472 9 6 2.3876 -0.8145 6.1433 10 6 1.9827 -0.0243 7.3894 11 6 2.4856 -0.7344 8.6199 12 1 3.0382 -1.6572 8.5229 13 6 2.2401 -0.2060 9.8694 14 7 1.5666 0.9174 9.9876 15 14 2.8627 -1.0866 11.3947 16 1 3.5855 -2.3202 10.9937 17 1 3.7852 -0.1931 12.1402 18 1 1.7127 -1.4463 12.2628 19 6 2.0323 -0.7105 -1.2304 20 6 1.7030 -2.0356 -1.4463 21 6 2.1601 -2.6860 -2.5772 22 6 2.9541 -2.0140 -3.4876 23 6 3.2878 -0.6905 -3.2691 24 6 2.8270 -0.0387 -2.1405 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 3.1264 -0.7995 1.2056 30 1 2.0700 1.0675 2.4493 31 1 0.5490 0.1472 2.5389 32 1 1.4016 0.7041 5.0344 33 1 1.9534 -1.8132 6.1899 34 1 3.4739 -0.8923 6.0991 35 1 2.4167 0.9745 7.3431 36 1 0.8964 0.0531 7.4335 37 1 1.3935 1.2890 10.8668 38 1 1.0861 -2.5618 -0.7330 39 1 1.8991 -3.7200 -2.7481 40 1 3.3134 -2.5229 -4.3698 41 1 3.9077 -0.1652 -3.9806 42 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342668382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:08 Heat of formation + Delta-G solvation = -49.478440 kcal Electronic energy + Delta-G solvation = -19884.925195 eV Core-core repulsion = 16828.305880 eV Total energy + Delta-G solvation = -3056.619315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.85371 -39.11778 -36.09117 -34.78995 -32.84065 -31.52358 -31.08730 -29.71342 -28.82607 -25.73150 -24.40123 -23.05673 -22.41975 -20.95325 -20.14423 -19.70490 -17.26062 -16.66000 -16.25226 -15.80955 -15.42958 -15.06928 -14.96857 -14.46985 -14.18111 -13.93974 -13.71772 -13.51099 -13.26423 -12.89579 -12.52916 -12.41518 -12.31018 -11.92818 -11.70961 -11.38353 -11.19639 -11.05158 -11.00823 -10.81466 -10.63227 -10.58019 -10.32897 -9.78087 -9.44221 -9.15949 -9.10330 -8.85581 -8.53297 -8.33988 -6.09977 -4.12666 1.17587 1.21747 3.06231 3.27941 3.35442 3.40546 3.57650 3.75988 4.40716 4.45073 4.56773 4.80398 4.87173 4.93192 4.95321 5.07372 5.23569 5.27124 5.28779 5.29374 5.37167 5.43869 5.58747 5.73398 5.75473 5.85575 5.87495 5.93052 6.12768 6.25976 6.30552 6.33180 6.36078 6.37046 6.49857 6.74984 6.82350 6.95759 7.51939 7.61664 7.88594 8.05564 8.28019 8.70517 8.93751 9.52271 11.01647 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.045723 B = 0.002390 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.234072 B =11710.641974 C =11975.705368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 H 0.079 0.921 4 C -0.093 4.093 5 C -0.143 4.143 6 C 0.502 3.498 7 O -0.553 6.553 8 N -0.725 5.725 9 C 0.121 3.879 10 C 0.012 3.988 11 C -0.521 4.521 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.071 4.071 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.128 4.128 23 C -0.121 4.121 24 C -0.119 4.119 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.397 0.603 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 0.044 -25.742 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 H 0.097 0.903 4 C -0.131 4.131 5 C -0.183 4.183 6 C 0.288 3.712 7 O -0.432 6.432 8 N -0.375 5.375 9 C -0.001 4.001 10 C -0.025 4.025 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.071 4.071 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.137 4.137 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.231 0.769 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.414 -0.589 -25.659 25.704 hybrid contribution 0.079 0.050 0.985 0.989 sum -1.335 -0.539 -24.674 24.716 Atomic orbital electron populations 1.21917 0.94227 1.02320 1.01920 1.20234 0.96082 0.99122 0.91902 0.90287 1.21372 1.01992 0.98957 0.90806 1.21748 1.02791 1.00535 0.93242 1.20651 0.80038 0.85519 0.84970 1.90670 1.41316 1.24180 1.86999 1.46367 1.56918 1.27615 1.06561 1.21699 0.98359 0.96353 0.83729 1.19328 0.97294 0.95625 0.90289 1.21100 1.35481 1.08726 0.90622 0.92217 1.25004 0.95082 0.94999 0.99285 1.69966 1.40160 1.19442 1.23768 0.86457 0.78618 0.79774 0.82724 1.19586 1.20930 1.20924 1.19893 0.97103 0.94263 0.95831 1.21057 1.00164 0.94347 0.97444 1.21158 0.98090 0.99856 0.94628 1.21126 0.99023 0.94947 0.99555 1.21124 1.00105 0.95004 0.97643 1.21089 0.98157 0.99928 0.94516 0.92670 0.92352 0.91839 0.90988 0.91061 0.89159 0.88931 0.76941 0.92687 0.92686 0.95964 0.95963 0.92907 0.85984 0.86200 0.86375 0.86278 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.76 37.16 0.33 -0.84 16 2 C -0.05 -0.49 2.56 -91.77 -0.24 -0.73 16 3 H 0.08 0.63 7.88 -51.93 -0.41 0.22 16 4 C -0.09 -1.05 3.71 -26.73 -0.10 -1.15 16 5 C -0.14 -1.62 5.46 -27.88 -0.15 -1.77 16 6 C 0.50 8.35 7.83 -10.98 -0.09 8.26 16 7 O -0.55 -11.43 15.98 5.55 0.09 -11.34 16 8 N -0.72 -12.57 5.56 -60.29 -0.33 -12.90 16 9 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 10 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 11 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 15 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.07 -0.69 4.78 -104.62 -0.50 -1.19 16 20 C -0.11 -1.10 8.76 -39.58 -0.35 -1.45 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 22 C -0.13 -1.10 10.05 -39.59 -0.40 -1.49 16 23 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.12 -1.09 9.67 -39.58 -0.38 -1.47 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.47 7.41 -51.93 -0.38 0.09 16 27 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 28 H 0.07 0.89 7.51 -51.93 -0.39 0.50 16 29 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.87 6.56 -51.93 -0.34 0.53 16 32 H 0.40 5.87 8.47 -40.82 -0.35 5.52 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.12 1.12 7.16 -52.49 -0.38 0.74 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.90 7.95 -52.49 -0.42 0.49 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -32.29 349.31 -9.28 -41.58 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.77 Total: 1.70 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -3.25 Total: -15.29 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.40 Total: -38.34 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.29 -9.28 -41.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342668382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.902 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds