Wall clock time and date at job start Thu Apr 9 2020 13:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47060 * 294.99938 * 4 2 1 6 6 C 1.50703 * 109.47215 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99732 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99951 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99800 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47064 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.47215 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00153 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00005 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00132 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00105 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46990 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47327 * 120.00296 * 15 13 11 18 18 H 1.48509 * 109.47303 * 240.00541 * 15 13 11 19 19 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 20 20 C 1.38237 * 119.99936 * 299.72798 * 19 2 1 21 21 C 1.38239 * 120.00019 * 179.79019 * 20 19 2 22 22 C 1.38233 * 119.99539 * 0.43796 * 21 20 19 23 23 C 1.38231 * 120.00493 * 359.81540 * 22 21 20 24 24 C 1.38236 * 119.99974 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 26 26 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 28 28 H 1.09006 * 109.47500 * 54.99635 * 4 2 1 29 29 H 1.09000 * 109.47325 * 174.99723 * 4 2 1 30 30 H 1.08998 * 109.46849 * 299.99880 * 5 4 2 31 31 H 1.09000 * 109.47227 * 59.99725 * 5 4 2 32 32 H 0.96998 * 120.00136 * 0.02562 * 8 6 5 33 33 H 1.09006 * 109.47268 * 299.99853 * 9 8 6 34 34 H 1.09000 * 109.47553 * 59.99939 * 9 8 6 35 35 H 1.08998 * 109.46849 * 299.99599 * 10 9 8 36 36 H 1.09000 * 109.47218 * 60.00001 * 10 9 8 37 37 H 0.97006 * 120.00368 * 179.97438 * 14 13 11 38 38 H 1.07998 * 120.00490 * 359.97438 * 20 19 2 39 39 H 1.08000 * 120.00241 * 180.27418 * 21 20 19 40 40 H 1.08006 * 119.99896 * 179.83904 * 22 21 20 41 41 H 1.08002 * 120.00573 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.00273 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0690 2.4953 6 6 2.1382 -0.6411 3.7258 7 8 2.7588 -1.6774 3.6168 8 7 1.8983 -0.1245 4.9472 9 6 2.3876 -0.8145 6.1433 10 6 1.9827 -0.0243 7.3894 11 6 2.4856 -0.7344 8.6199 12 1 3.0382 -1.6572 8.5229 13 6 2.2401 -0.2060 9.8694 14 7 1.5666 0.9174 9.9876 15 14 2.8627 -1.0866 11.3947 16 1 3.5855 -2.3202 10.9937 17 1 3.7852 -0.1931 12.1402 18 1 1.7127 -1.4463 12.2628 19 6 2.0323 -0.7105 -1.2304 20 6 1.7030 -2.0356 -1.4463 21 6 2.1601 -2.6860 -2.5772 22 6 2.9541 -2.0140 -3.4876 23 6 3.2878 -0.6905 -3.2691 24 6 2.8270 -0.0387 -2.1405 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6054 -1.7198 1.2952 29 1 3.1264 -0.7995 1.2056 30 1 2.0700 1.0675 2.4493 31 1 0.5490 0.1472 2.5389 32 1 1.4016 0.7041 5.0344 33 1 1.9534 -1.8132 6.1899 34 1 3.4739 -0.8923 6.0991 35 1 2.4167 0.9745 7.3431 36 1 0.8964 0.0531 7.4335 37 1 1.3935 1.2890 10.8668 38 1 1.0861 -2.5618 -0.7330 39 1 1.8991 -3.7200 -2.7481 40 1 3.3134 -2.5229 -4.3698 41 1 3.9077 -0.1652 -3.9806 42 1 3.0874 0.9955 -1.9699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342668382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:08 Heat of formation + Delta-G solvation = -67.783403 kcal Electronic energy + Delta-G solvation = -19885.718957 eV Core-core repulsion = 16828.305880 eV Total energy + Delta-G solvation = -3057.413077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.84039 -40.19978 -37.00325 -36.41935 -34.80781 -32.56204 -31.74919 -31.31714 -29.67773 -27.14520 -25.77167 -23.87741 -23.28453 -22.69657 -21.33602 -20.59564 -18.61887 -18.12973 -17.49163 -16.87814 -16.66907 -16.45012 -16.12762 -15.86404 -15.42455 -14.90453 -14.61416 -14.43207 -14.28877 -14.13755 -14.07843 -13.51266 -13.21798 -13.10277 -12.95586 -12.74102 -12.51761 -12.44984 -12.23011 -12.08142 -11.82008 -11.67378 -11.49937 -11.44987 -11.35489 -10.77239 -10.61807 -9.98495 -9.77373 -9.54420 -8.25331 -6.35697 0.50310 0.54584 1.40003 1.41049 1.54160 1.72412 2.30272 2.47878 2.93407 3.09243 3.71170 3.78887 3.94272 4.17476 4.19077 4.24642 4.33258 4.40653 4.46908 4.51838 4.58532 4.60400 4.69778 4.72942 4.76434 4.85235 5.04770 5.07597 5.10619 5.22318 5.24372 5.30574 5.40063 5.44109 5.51813 5.57787 5.64042 5.67191 5.78552 5.81017 6.15864 6.17988 6.68849 6.77731 7.33691 7.35281 8.86594 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.045723 B = 0.002390 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.234072 B =11710.641974 C =11975.705368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 H 0.094 0.906 4 C -0.088 4.088 5 C -0.130 4.130 6 C 0.499 3.501 7 O -0.597 6.597 8 N -0.720 5.720 9 C 0.139 3.861 10 C 0.023 3.977 11 C -0.547 4.547 12 H 0.056 0.944 13 C 0.007 3.993 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.085 4.085 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.128 4.128 24 C -0.130 4.130 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.412 0.588 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.009 0.991 36 H 0.010 0.990 37 H 0.266 0.734 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 0.721 -26.586 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.064 4.064 3 H 0.112 0.888 4 C -0.126 4.126 5 C -0.170 4.170 6 C 0.288 3.712 7 O -0.478 6.478 8 N -0.371 5.371 9 C 0.015 3.985 10 C -0.015 4.015 11 C -0.586 4.586 12 H 0.075 0.925 13 C -0.192 4.192 14 N -0.565 5.565 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.085 4.085 20 C -0.148 4.148 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.146 4.146 24 C -0.148 4.148 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.248 0.752 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.545 0.112 -26.523 26.569 hybrid contribution 0.123 -0.173 1.188 1.207 sum -1.422 -0.060 -25.335 25.375 Atomic orbital electron populations 1.21915 0.93342 1.02232 1.02766 1.20169 0.96713 0.99326 0.90227 0.88754 1.21288 1.00555 0.98626 0.92096 1.21785 1.04402 1.00902 0.89873 1.21611 0.78809 0.84973 0.85798 1.90654 1.43257 1.26346 1.87583 1.46208 1.57111 1.28041 1.05757 1.21179 0.97442 0.95552 0.84298 1.19133 0.96115 0.95082 0.91122 1.21502 1.35855 1.09035 0.92171 0.92532 1.25871 0.95137 0.95731 1.02479 1.70059 1.40972 1.20663 1.24821 0.85397 0.78263 0.78692 0.78693 1.19122 1.20138 1.20122 1.20061 0.97621 0.94408 0.96431 1.21206 1.00812 0.94845 0.97969 1.21418 0.98260 1.00675 0.94623 1.21438 0.98663 0.95233 1.00072 1.21452 1.00043 0.95200 0.97885 1.21361 0.97977 1.00805 0.94630 0.92036 0.92970 0.90730 0.92655 0.93213 0.86272 0.86160 0.75206 0.93931 0.93967 0.97232 0.97208 0.92503 0.86224 0.84960 0.84443 0.84257 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.76 71.98 0.63 -1.38 16 2 C -0.05 -0.74 2.56 -11.54 -0.03 -0.77 16 3 H 0.09 1.24 7.88 -2.39 -0.02 1.23 16 4 C -0.09 -1.89 3.71 30.59 0.11 -1.78 16 5 C -0.13 -2.66 5.46 29.85 0.16 -2.49 16 6 C 0.50 16.25 7.83 87.66 0.69 16.94 16 7 O -0.60 -24.99 15.98 -3.04 -0.05 -25.03 16 8 N -0.72 -24.56 5.56 -463.05 -2.57 -27.13 16 9 C 0.14 6.08 5.61 86.38 0.48 6.57 16 10 C 0.02 1.16 5.09 29.85 0.15 1.31 16 11 C -0.55 -30.86 9.11 25.60 0.23 -30.62 16 12 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 13 C 0.01 0.37 5.46 84.65 0.46 0.83 16 14 N -0.93 -54.22 13.29 21.44 0.28 -53.93 16 15 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 C -0.09 -1.58 4.78 -19.87 -0.09 -1.67 16 20 C -0.13 -2.54 8.76 22.27 0.20 -2.34 16 21 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 22 C -0.14 -2.15 10.05 22.27 0.22 -1.93 16 23 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 24 C -0.13 -2.18 9.67 22.27 0.22 -1.96 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.78 7.41 -2.39 -0.02 0.77 16 27 H 0.07 0.86 6.56 -2.39 -0.02 0.84 16 28 H 0.05 1.37 7.51 -2.38 -0.02 1.35 16 29 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 30 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.12 1.87 6.56 -2.39 -0.02 1.85 16 32 H 0.41 11.63 8.47 -92.71 -0.79 10.85 16 33 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.27 14.58 8.31 -92.70 -0.77 13.81 16 38 H 0.12 2.26 7.16 -2.91 -0.02 2.24 16 39 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 42 H 0.14 1.75 7.95 -2.91 -0.02 1.73 16 Total: -1.00 -69.92 349.31 3.78 -66.14 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.21 Total: 17.27 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 3.88 Total: -23.16 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -2.29 Total: -81.07 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -69.92 3.78 -66.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342668382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.643 kcal (2) G-P(sol) polarization free energy of solvation -69.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds