Wall clock time and date at job start Thu Apr 9 2020 13:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99925 * 2 1 4 4 C 1.50691 * 109.47300 * 293.95876 * 3 2 1 5 5 C 1.38638 * 119.75245 * 89.99669 * 4 3 2 6 6 C 1.37611 * 120.24993 * 179.97438 * 5 4 3 7 7 C 1.40711 * 119.74733 * 0.28368 * 6 5 4 8 8 C 1.41403 * 120.24688 * 179.69822 * 7 6 5 9 9 H 1.07996 * 119.99673 * 24.26936 * 8 7 6 10 10 C 1.39947 * 119.99783 * 204.27324 * 8 7 6 11 11 N 1.30821 * 120.00278 * 17.70402 * 10 8 7 12 12 Si 1.86794 * 119.99656 * 197.69699 * 10 8 7 13 13 H 1.48493 * 109.47312 * 90.00089 * 12 10 8 14 14 H 1.48508 * 109.47266 * 209.99987 * 12 10 8 15 15 H 1.48505 * 109.47500 * 330.00000 * 12 10 8 16 16 C 1.40719 * 119.50912 * 359.42756 * 7 6 5 17 17 C 1.37617 * 119.74442 * 0.58776 * 16 7 6 18 18 C 1.46897 * 111.00449 * 123.96014 * 2 1 3 19 19 C 1.52994 * 109.47170 * 66.04211 * 18 2 1 20 20 H 1.09003 * 110.80396 * 305.70025 * 19 18 2 21 21 C 1.54811 * 110.90626 * 182.07644 * 19 18 2 22 22 C 1.54101 * 104.18828 * 220.92122 * 21 19 18 23 23 O 1.43743 * 107.29196 * 357.97146 * 22 21 19 24 24 C 1.44413 * 107.00360 * 26.48643 * 23 22 21 25 25 H 1.08994 * 109.47386 * 59.99454 * 1 2 3 26 26 H 1.08998 * 109.47365 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47106 * 299.99457 * 1 2 3 28 28 H 1.09006 * 109.46871 * 173.95644 * 3 2 1 29 29 H 1.08999 * 109.47007 * 53.95902 * 3 2 1 30 30 H 1.08005 * 119.87089 * 0.02562 * 5 4 3 31 31 H 1.08008 * 120.12673 * 180.02562 * 6 5 4 32 32 H 0.96999 * 120.00115 * 179.97438 * 11 10 8 33 33 H 1.07999 * 120.12530 * 180.30317 * 16 7 6 34 34 H 1.07997 * 119.87267 * 179.70235 * 17 16 7 35 35 H 1.09001 * 109.47056 * 186.04831 * 18 2 1 36 36 H 1.09008 * 109.46896 * 306.04133 * 18 2 1 37 37 H 1.09000 * 110.49098 * 339.59566 * 21 19 18 38 38 H 1.08997 * 110.49068 * 102.24583 * 21 19 18 39 39 H 1.09004 * 109.87886 * 117.39078 * 22 21 19 40 40 H 1.09000 * 109.88042 * 238.39900 * 22 21 19 41 41 H 1.08999 * 110.65575 * 201.48491 * 24 23 22 42 42 H 1.09004 * 110.60380 * 78.47097 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2983 5 6 0.4462 2.7498 -1.4023 6 6 0.1088 3.3712 -2.5829 7 6 0.9747 3.2865 -3.6888 8 6 0.6355 3.9156 -4.9089 9 1 -0.0419 4.7567 -4.9126 10 6 1.1776 3.4482 -6.1115 11 7 1.7045 2.2523 -6.1704 12 14 1.1485 4.5321 -7.6325 13 1 2.3864 5.3508 -7.6808 14 1 1.0711 3.6798 -8.8463 15 1 -0.0353 5.4273 -7.5800 16 6 2.1834 2.5758 -3.5698 17 6 2.5003 1.9619 -2.3796 18 6 1.9955 -0.7661 1.1374 19 6 1.6315 -2.2426 0.9701 20 1 0.5574 -2.3630 0.8290 21 6 2.1264 -3.0740 2.1787 22 6 2.6726 -4.3695 1.5477 23 8 2.4508 -4.2809 0.1303 24 6 2.4184 -2.8766 -0.2052 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 3.0798 1.3444 0.1082 29 1 1.5612 1.9274 0.8310 30 1 -0.2186 2.8104 -0.5533 31 1 -0.8190 3.9184 -2.6616 32 1 2.0799 1.9282 -7.0041 33 1 2.8577 2.5085 -4.4108 34 1 3.4251 1.4119 -2.2875 35 1 3.0798 -0.6611 1.1754 36 1 1.5612 -0.3873 2.0628 37 1 2.9185 -2.5440 2.7077 38 1 1.2993 -3.2971 2.8526 39 1 3.7397 -4.4594 1.7509 40 1 2.1439 -5.2314 1.9547 41 1 1.8942 -2.7184 -1.1476 42 1 3.4288 -2.4705 -0.2539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343544885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:10 Heat of formation + Delta-G solvation = -31.401614 kcal Electronic energy + Delta-G solvation = -20947.777099 eV Core-core repulsion = 17891.941654 eV Total energy + Delta-G solvation = -3055.835445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.57157 -38.04624 -36.50266 -33.79446 -32.52748 -30.38937 -29.41853 -29.06521 -27.24808 -26.34020 -24.28489 -22.74729 -21.62498 -20.94438 -20.13880 -19.66507 -17.27325 -16.73437 -15.86214 -15.39396 -15.28924 -14.98878 -14.65815 -14.45185 -13.90783 -13.75039 -13.29014 -13.11968 -12.78987 -12.46378 -11.93822 -11.82595 -11.76198 -11.56970 -11.41852 -11.37154 -11.19282 -11.06261 -10.87519 -10.81697 -10.53421 -10.38061 -10.34356 -9.67665 -9.56264 -9.34639 -9.11402 -7.96178 -7.41700 -7.26421 -6.73884 -4.33086 2.75479 3.07861 3.09664 3.11537 3.18624 3.92736 3.94456 4.21653 4.56116 4.67104 4.74440 4.93662 4.99838 5.22067 5.41062 5.53715 5.56222 5.59196 5.63267 5.73368 5.74334 5.76761 5.83853 5.94658 6.05033 6.08349 6.15770 6.24173 6.37102 6.42930 6.46722 6.86853 6.97578 7.09036 7.30806 7.34729 7.44637 7.45998 7.63960 7.90112 8.07835 8.16918 8.32515 8.67033 8.91800 9.00247 10.20396 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028301 B = 0.003573 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.134799 B = 7835.450858 C = 8449.411754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.534 5.534 3 C 0.121 3.879 4 C -0.208 4.208 5 C -0.084 4.084 6 C -0.228 4.228 7 C 0.113 3.887 8 C -0.464 4.464 9 H 0.076 0.924 10 C 0.076 3.924 11 N -0.791 5.791 12 Si 0.907 3.093 13 H -0.268 1.268 14 H -0.278 1.278 15 H -0.263 1.263 16 C -0.168 4.168 17 C -0.079 4.079 18 C 0.064 3.936 19 C -0.117 4.117 20 H 0.086 0.914 21 C -0.152 4.152 22 C 0.048 3.952 23 O -0.385 6.385 24 C 0.063 3.937 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.015 0.985 28 H 0.063 0.937 29 H 0.022 0.978 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.280 0.720 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -7.388 12.287 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.258 5.258 3 C -0.005 4.005 4 C -0.210 4.210 5 C -0.102 4.102 6 C -0.248 4.248 7 C 0.110 3.890 8 C -0.494 4.494 9 H 0.094 0.906 10 C -0.142 4.142 11 N -0.416 5.416 12 Si 0.732 3.268 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.187 1.187 16 C -0.187 4.187 17 C -0.098 4.098 18 C -0.064 4.064 19 C -0.136 4.136 20 H 0.104 0.896 21 C -0.191 4.191 22 C -0.029 4.029 23 O -0.304 6.304 24 C -0.013 4.013 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.034 0.966 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.841 -7.964 11.548 14.148 hybrid contribution -0.321 0.954 0.191 1.024 sum 1.520 -7.010 11.739 13.757 Atomic orbital electron populations 1.22433 0.87737 1.00984 1.01227 1.62100 1.07942 1.14826 1.40905 1.20747 0.98296 0.86149 0.95320 1.18826 0.98746 1.08252 0.95143 1.20339 0.95364 0.98282 0.96248 1.20926 1.00139 1.08640 0.95065 1.17615 0.89988 0.89474 0.91907 1.19603 1.24749 1.14232 0.90773 0.90556 1.25903 0.93041 0.94437 1.00798 1.69832 1.28613 1.14817 1.28327 0.86335 0.79794 0.80648 0.80062 1.19306 1.20331 1.18682 1.21305 0.97830 1.03182 0.96375 1.20476 0.97556 0.98512 0.93241 1.22064 0.99996 0.92091 0.92289 1.22759 1.01376 0.94772 0.94708 0.89576 1.22977 1.01407 0.96275 0.98415 1.23085 0.99765 0.97872 0.82196 1.88870 1.93780 1.25497 1.22249 1.23547 0.99597 0.79472 0.98725 0.89944 0.92277 0.96620 0.91806 0.95984 0.90016 0.89251 0.90887 0.86570 0.89566 0.90932 0.95171 0.90676 0.90734 0.92727 0.90314 0.88162 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.94 60.06 0.54 0.91 16 2 N -0.53 -8.40 4.63 -244.37 -1.13 -9.53 16 3 C 0.12 2.08 5.11 -4.98 -0.03 2.06 16 4 C -0.21 -4.41 4.91 -104.33 -0.51 -4.92 16 5 C -0.08 -1.83 7.92 -39.66 -0.31 -2.14 16 6 C -0.23 -5.56 9.80 -38.88 -0.38 -5.94 16 7 C 0.11 3.00 5.57 -106.82 -0.60 2.40 16 8 C -0.46 -12.34 9.06 -37.74 -0.34 -12.68 16 9 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 10 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 11 N -0.79 -20.55 10.95 55.55 0.61 -19.94 16 12 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 13 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 14 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 15 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 16 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 17 C -0.08 -1.83 9.67 -39.66 -0.38 -2.21 16 18 C 0.06 0.80 4.29 -3.83 -0.02 0.78 16 19 C -0.12 -1.36 3.04 -88.61 -0.27 -1.63 16 20 H 0.09 1.04 6.33 -51.93 -0.33 0.72 16 21 C -0.15 -1.42 6.60 -25.20 -0.17 -1.58 16 22 C 0.05 0.48 7.70 37.73 0.29 0.77 16 23 O -0.38 -5.28 11.52 -35.23 -0.41 -5.68 16 24 C 0.06 0.83 7.07 38.21 0.27 1.10 16 25 H 0.08 1.48 6.16 -51.93 -0.32 1.16 16 26 H 0.06 0.81 6.22 -51.93 -0.32 0.49 16 27 H 0.02 0.22 8.14 -51.92 -0.42 -0.20 16 28 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 29 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 30 H 0.08 1.59 8.02 -52.48 -0.42 1.17 16 31 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 32 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 33 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 34 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.07 0.87 7.84 -51.93 -0.41 0.46 16 36 H 0.03 0.36 8.12 -51.92 -0.42 -0.06 16 37 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.06 0.80 7.98 -51.93 -0.41 0.38 16 LS Contribution 335.18 15.07 5.05 5.05 Total: -1.00 -27.48 335.18 -9.95 -37.43 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.70 Total: 4.93 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: -2.33 Total: -25.94 kcal Atomic # 7 Polarization: -28.95 SS G_CDS: -0.52 Total: -29.47 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.41 Total: -5.68 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.48 -9.95 -37.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343544885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.026 kcal (2) G-P(sol) polarization free energy of solvation -27.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds