Wall clock time and date at job start Thu Apr 9 2020 13:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99925 * 2 1 4 4 C 1.50691 * 109.47300 * 293.95876 * 3 2 1 5 5 C 1.38638 * 119.75245 * 89.99669 * 4 3 2 6 6 C 1.37611 * 120.24993 * 179.97438 * 5 4 3 7 7 C 1.40711 * 119.74733 * 0.28368 * 6 5 4 8 8 C 1.41403 * 120.24688 * 179.69822 * 7 6 5 9 9 H 1.07996 * 119.99673 * 24.26936 * 8 7 6 10 10 C 1.39947 * 119.99783 * 204.27324 * 8 7 6 11 11 N 1.30821 * 120.00278 * 17.70402 * 10 8 7 12 12 Si 1.86794 * 119.99656 * 197.69699 * 10 8 7 13 13 H 1.48493 * 109.47312 * 90.00089 * 12 10 8 14 14 H 1.48508 * 109.47266 * 209.99987 * 12 10 8 15 15 H 1.48505 * 109.47500 * 330.00000 * 12 10 8 16 16 C 1.40719 * 119.50912 * 359.42756 * 7 6 5 17 17 C 1.37617 * 119.74442 * 0.58776 * 16 7 6 18 18 C 1.46897 * 111.00449 * 123.96014 * 2 1 3 19 19 C 1.52994 * 109.47170 * 66.04211 * 18 2 1 20 20 H 1.09003 * 110.80396 * 305.70025 * 19 18 2 21 21 C 1.54811 * 110.90626 * 182.07644 * 19 18 2 22 22 C 1.54101 * 104.18828 * 220.92122 * 21 19 18 23 23 O 1.43743 * 107.29196 * 357.97146 * 22 21 19 24 24 C 1.44413 * 107.00360 * 26.48643 * 23 22 21 25 25 H 1.08994 * 109.47386 * 59.99454 * 1 2 3 26 26 H 1.08998 * 109.47365 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47106 * 299.99457 * 1 2 3 28 28 H 1.09006 * 109.46871 * 173.95644 * 3 2 1 29 29 H 1.08999 * 109.47007 * 53.95902 * 3 2 1 30 30 H 1.08005 * 119.87089 * 0.02562 * 5 4 3 31 31 H 1.08008 * 120.12673 * 180.02562 * 6 5 4 32 32 H 0.96999 * 120.00115 * 179.97438 * 11 10 8 33 33 H 1.07999 * 120.12530 * 180.30317 * 16 7 6 34 34 H 1.07997 * 119.87267 * 179.70235 * 17 16 7 35 35 H 1.09001 * 109.47056 * 186.04831 * 18 2 1 36 36 H 1.09008 * 109.46896 * 306.04133 * 18 2 1 37 37 H 1.09000 * 110.49098 * 339.59566 * 21 19 18 38 38 H 1.08997 * 110.49068 * 102.24583 * 21 19 18 39 39 H 1.09004 * 109.87886 * 117.39078 * 22 21 19 40 40 H 1.09000 * 109.88042 * 238.39900 * 22 21 19 41 41 H 1.08999 * 110.65575 * 201.48491 * 24 23 22 42 42 H 1.09004 * 110.60380 * 78.47097 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2983 5 6 0.4462 2.7498 -1.4023 6 6 0.1088 3.3712 -2.5829 7 6 0.9747 3.2865 -3.6888 8 6 0.6355 3.9156 -4.9089 9 1 -0.0419 4.7567 -4.9126 10 6 1.1776 3.4482 -6.1115 11 7 1.7045 2.2523 -6.1704 12 14 1.1485 4.5321 -7.6325 13 1 2.3864 5.3508 -7.6808 14 1 1.0711 3.6798 -8.8463 15 1 -0.0353 5.4273 -7.5800 16 6 2.1834 2.5758 -3.5698 17 6 2.5003 1.9619 -2.3796 18 6 1.9955 -0.7661 1.1374 19 6 1.6315 -2.2426 0.9701 20 1 0.5574 -2.3630 0.8290 21 6 2.1264 -3.0740 2.1787 22 6 2.6726 -4.3695 1.5477 23 8 2.4508 -4.2809 0.1303 24 6 2.4184 -2.8766 -0.2052 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 3.0798 1.3444 0.1082 29 1 1.5612 1.9274 0.8310 30 1 -0.2186 2.8104 -0.5533 31 1 -0.8190 3.9184 -2.6616 32 1 2.0799 1.9282 -7.0041 33 1 2.8577 2.5085 -4.4108 34 1 3.4251 1.4119 -2.2875 35 1 3.0798 -0.6611 1.1754 36 1 1.5612 -0.3873 2.0628 37 1 2.9185 -2.5440 2.7077 38 1 1.2993 -3.2971 2.8526 39 1 3.7397 -4.4594 1.7509 40 1 2.1439 -5.2314 1.9547 41 1 1.8942 -2.7184 -1.1476 42 1 3.4288 -2.4705 -0.2539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343544885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:09 Heat of formation + Delta-G solvation = -46.824368 kcal Electronic energy + Delta-G solvation = -20948.445880 eV Core-core repulsion = 17891.941654 eV Total energy + Delta-G solvation = -3056.504226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.54915 -39.65604 -37.91041 -35.56377 -33.67825 -31.97665 -31.12478 -30.21113 -28.75034 -27.61552 -25.79463 -23.85439 -22.82164 -22.76702 -21.35076 -21.09826 -19.19118 -17.67684 -17.20533 -16.83644 -16.40275 -16.17268 -15.99589 -15.75578 -15.59467 -15.12491 -14.71778 -14.39836 -14.10490 -13.81333 -13.74416 -13.41300 -13.09641 -12.75669 -12.72748 -12.68217 -12.48256 -12.34290 -12.31500 -12.16530 -11.90674 -11.83712 -11.43072 -11.28008 -11.17933 -10.98373 -10.60426 -9.30470 -9.27467 -9.02249 -8.61094 -6.30859 0.97890 1.18690 1.37827 1.51019 1.51953 2.21420 2.68220 3.02160 3.21631 3.70260 3.82224 3.85163 4.01686 4.18042 4.25456 4.34472 4.39292 4.49022 4.53381 4.57894 4.61464 4.70495 4.74630 4.82394 4.87354 4.88956 4.92568 4.97987 5.09427 5.12574 5.16164 5.18545 5.31697 5.41999 5.50373 5.74447 5.97202 5.98212 6.12441 6.16424 6.31948 6.35057 6.42948 6.74738 6.97428 7.07988 8.35481 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028301 B = 0.003573 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.134799 B = 7835.450858 C = 8449.411754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.551 5.551 3 C 0.126 3.874 4 C -0.192 4.192 5 C -0.080 4.080 6 C -0.245 4.245 7 C 0.079 3.921 8 C -0.504 4.504 9 H 0.072 0.928 10 C 0.035 3.965 11 N -0.826 5.826 12 Si 0.981 3.019 13 H -0.262 1.262 14 H -0.268 1.268 15 H -0.259 1.259 16 C -0.192 4.192 17 C -0.086 4.086 18 C 0.069 3.931 19 C -0.112 4.112 20 H 0.080 0.920 21 C -0.143 4.143 22 C 0.039 3.961 23 O -0.411 6.411 24 C 0.061 3.939 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.287 0.713 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 -7.897 14.511 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.275 5.275 3 C 0.000 4.000 4 C -0.194 4.194 5 C -0.099 4.099 6 C -0.264 4.264 7 C 0.077 3.923 8 C -0.534 4.534 9 H 0.090 0.910 10 C -0.180 4.180 11 N -0.452 5.452 12 Si 0.802 3.198 13 H -0.187 1.187 14 H -0.193 1.193 15 H -0.183 1.183 16 C -0.211 4.211 17 C -0.105 4.105 18 C -0.059 4.059 19 C -0.131 4.131 20 H 0.099 0.901 21 C -0.181 4.181 22 C -0.037 4.037 23 O -0.331 6.331 24 C -0.015 4.015 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.030 -8.484 13.798 16.325 hybrid contribution -0.373 0.988 -0.323 1.104 sum 1.658 -7.496 13.475 15.509 Atomic orbital electron populations 1.22358 0.87638 1.01662 1.00348 1.61959 1.08194 1.14029 1.43276 1.20671 0.99334 0.86950 0.93093 1.19289 0.97395 1.06427 0.96290 1.20630 0.95954 0.97128 0.96183 1.21135 1.00198 1.09367 0.95710 1.17946 0.90842 0.90566 0.92937 1.19832 1.26468 1.15103 0.91980 0.90954 1.26740 0.92162 0.95486 1.03596 1.69892 1.29532 1.16272 1.29506 0.85222 0.79889 0.78646 0.76038 1.18685 1.19287 1.18281 1.21260 0.97878 1.04936 0.97067 1.20719 0.98631 0.98130 0.92975 1.22093 1.00444 0.91815 0.91515 1.22690 1.00789 0.94525 0.95144 0.90136 1.22950 1.02381 0.95239 0.97501 1.23332 1.00863 0.99057 0.80445 1.88842 1.94006 1.25620 1.24603 1.23479 0.99561 0.79844 0.98628 0.93085 0.90978 0.95051 0.90513 0.94384 0.87124 0.88938 0.90282 0.88563 0.88013 0.90087 0.93478 0.89121 0.89097 0.91665 0.88899 0.90428 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 8.94 127.69 1.14 1.94 16 2 N -0.55 -15.90 4.63 -927.05 -4.30 -20.20 16 3 C 0.13 3.97 5.11 85.55 0.44 4.40 16 4 C -0.19 -7.93 4.91 -19.68 -0.10 -8.02 16 5 C -0.08 -3.44 7.92 22.22 0.18 -3.27 16 6 C -0.24 -12.16 9.80 22.73 0.22 -11.94 16 7 C 0.08 4.39 5.57 -21.29 -0.12 4.27 16 8 C -0.50 -28.00 9.06 23.46 0.21 -27.79 16 9 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 10 C 0.03 1.80 5.14 85.26 0.44 2.24 16 11 N -0.83 -44.58 10.95 21.83 0.24 -44.34 16 12 Si 0.98 39.26 29.59 68.60 2.03 41.29 16 13 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 14 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 15 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 16 C -0.19 -10.33 8.70 22.73 0.20 -10.13 16 17 C -0.09 -3.99 9.67 22.22 0.21 -3.78 16 18 C 0.07 1.47 4.29 86.30 0.37 1.85 16 19 C -0.11 -2.31 3.04 -9.49 -0.03 -2.34 16 20 H 0.08 1.76 6.33 -2.39 -0.02 1.74 16 21 C -0.14 -2.13 6.60 31.58 0.21 -1.92 16 22 C 0.04 0.69 7.70 72.35 0.56 1.25 16 23 O -0.41 -10.79 11.52 -148.98 -1.72 -12.51 16 24 C 0.06 1.55 7.07 72.67 0.51 2.06 16 25 H 0.05 1.77 6.16 -2.39 -0.01 1.76 16 26 H 0.07 1.84 6.22 -2.39 -0.01 1.83 16 27 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.08 2.24 7.87 -2.38 -0.02 2.22 16 29 H 0.04 1.10 8.06 -2.39 -0.02 1.08 16 30 H 0.11 4.06 8.02 -2.91 -0.02 4.04 16 31 H 0.09 4.40 8.06 -2.91 -0.02 4.37 16 32 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 33 H 0.10 5.47 6.16 -2.91 -0.02 5.45 16 34 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 35 H 0.08 1.63 7.84 -2.39 -0.02 1.61 16 36 H 0.05 0.89 8.12 -2.38 -0.02 0.87 16 37 H 0.09 1.10 7.86 -2.39 -0.02 1.09 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.06 1.51 7.98 -2.39 -0.02 1.49 16 Total: -1.00 -61.57 335.18 1.69 -59.88 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.98 Total: 27.07 kcal Atomic # 6 Polarization: -55.63 SS G_CDS: 4.45 Total: -51.18 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -4.06 Total: -64.54 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -1.72 Total: -12.51 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -61.57 1.69 -59.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343544885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.054 kcal (2) G-P(sol) polarization free energy of solvation -61.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds