Wall clock time and date at job start Thu Apr 9 2020 13:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 110.99872 * 2 1 4 4 C 1.50698 * 109.46968 * 66.05069 * 3 2 1 5 5 C 1.38635 * 119.75492 * 89.99839 * 4 3 2 6 6 C 1.37611 * 120.25212 * 179.97438 * 5 4 3 7 7 C 1.40717 * 119.74429 * 359.97438 * 6 5 4 8 8 C 1.41393 * 120.24544 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00167 * 334.84990 * 8 7 6 10 10 C 1.39947 * 120.00447 * 154.85088 * 8 7 6 11 11 N 1.30829 * 119.99580 * 334.27844 * 10 8 7 12 12 Si 1.86794 * 120.00413 * 154.27772 * 10 8 7 13 13 H 1.48504 * 109.47556 * 180.02562 * 12 10 8 14 14 H 1.48495 * 109.47307 * 60.00117 * 12 10 8 15 15 H 1.48499 * 109.47060 * 300.00218 * 12 10 8 16 16 C 1.40717 * 119.51251 * 0.27207 * 7 6 5 17 17 C 1.37622 * 119.74258 * 359.45159 * 16 7 6 18 18 C 1.46902 * 110.99740 * 236.04776 * 2 1 3 19 19 C 1.52998 * 109.47459 * 293.95332 * 18 2 1 20 20 H 1.08999 * 110.74779 * 57.01950 * 19 18 2 21 21 C 1.55306 * 110.85186 * 180.71694 * 19 18 2 22 22 C 1.54938 * 100.94206 * 152.32308 * 21 19 18 23 23 O 1.43651 * 105.13904 * 323.55503 * 22 21 19 24 24 C 1.43241 * 109.96605 * 24.42998 * 23 22 21 25 25 H 1.09010 * 109.47429 * 60.00167 * 1 2 3 26 26 H 1.09000 * 109.47228 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47491 * 300.00087 * 1 2 3 28 28 H 1.08998 * 109.47591 * 306.04470 * 3 2 1 29 29 H 1.09008 * 109.47003 * 186.04492 * 3 2 1 30 30 H 1.07997 * 119.87250 * 359.97438 * 5 4 3 31 31 H 1.07999 * 120.13162 * 179.97438 * 6 5 4 32 32 H 0.96996 * 120.00212 * 354.29995 * 11 10 8 33 33 H 1.07998 * 120.12873 * 179.72603 * 16 7 6 34 34 H 1.07997 * 119.87625 * 180.27232 * 17 16 7 35 35 H 1.08995 * 109.47433 * 53.95772 * 18 2 1 36 36 H 1.09001 * 109.46885 * 173.95295 * 18 2 1 37 37 H 1.08999 * 111.12196 * 270.24508 * 21 19 18 38 38 H 1.08996 * 111.12192 * 34.40361 * 21 19 18 39 39 H 1.09003 * 110.31496 * 204.64220 * 22 21 19 40 40 H 1.09007 * 110.39514 * 82.51733 * 22 21 19 41 41 H 1.08998 * 109.82547 * 238.76796 * 24 23 22 42 42 H 1.09003 * 109.82700 * 117.80784 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 6 2.5002 1.9613 2.3799 6 6 2.1833 2.5747 3.5703 7 6 0.9780 3.2915 3.6871 8 6 0.6421 3.9263 4.9050 9 1 1.0512 3.5609 5.8353 10 6 -0.2205 5.0283 4.9052 11 7 -0.3219 5.7798 3.8390 12 14 -1.2272 5.4264 6.4275 13 1 -2.0553 6.6323 6.1721 14 1 -0.3151 5.6847 7.5705 15 1 -2.1119 4.2782 6.7500 16 6 0.1070 3.3675 2.5845 17 6 0.4471 2.7510 1.4020 18 6 1.9954 -0.7660 -1.1376 19 6 1.6314 -2.2426 -0.9705 20 1 0.5525 -2.3662 -0.8772 21 6 2.1890 -3.0863 -2.1492 22 6 2.3662 -4.4654 -1.4657 23 8 2.7936 -4.1685 -0.1268 24 6 2.3615 -2.8543 0.2445 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.5611 1.9274 -0.8309 29 1 3.0797 1.3444 -0.1082 30 1 3.4248 1.4110 2.2877 31 1 2.8570 2.5063 4.4116 32 1 0.2599 5.6239 3.0787 33 1 -0.8227 3.9112 2.6646 34 1 -0.2178 2.8116 0.5531 35 1 1.5611 -0.3872 -2.0628 36 1 3.0796 -0.6611 -1.1757 37 1 1.4703 -3.1423 -2.9667 38 1 3.1451 -2.6937 -2.4954 39 1 3.1260 -5.0500 -1.9845 40 1 1.4196 -5.0058 -1.4497 41 1 3.2243 -2.2411 0.5046 42 1 1.6803 -2.9150 1.0932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343544890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:12 Heat of formation + Delta-G solvation = -37.930223 kcal Electronic energy + Delta-G solvation = -20939.753125 eV Core-core repulsion = 17883.634578 eV Total energy + Delta-G solvation = -3056.118546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.66094 -38.20566 -36.68424 -34.02717 -32.59269 -30.31901 -29.45604 -29.26376 -27.15317 -26.35254 -24.26770 -22.68741 -21.83759 -21.06679 -20.16662 -19.83894 -17.90506 -16.94387 -16.07108 -15.31908 -15.10401 -14.87245 -14.62207 -14.35665 -14.10910 -13.74931 -13.53106 -13.27651 -12.92399 -12.40503 -12.14460 -12.01662 -11.95251 -11.66922 -11.48723 -11.29003 -11.20148 -11.15414 -10.93336 -10.79403 -10.65122 -10.40728 -10.31009 -9.58453 -9.55430 -9.46200 -8.96226 -8.06288 -7.65037 -7.47185 -7.16710 -4.42475 2.70780 2.89974 3.15862 3.24500 3.36326 3.81889 4.02353 4.08329 4.42720 4.59345 4.69673 4.84259 5.04423 5.11013 5.29381 5.42940 5.47420 5.52862 5.54193 5.58847 5.68988 5.70599 5.76262 5.85946 5.96033 6.02194 6.13728 6.16711 6.25491 6.27602 6.35086 6.78523 6.94450 7.01948 7.16507 7.31690 7.35516 7.41741 7.69818 7.80398 7.83801 7.99454 8.21379 8.33851 8.77788 8.90551 10.05662 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036441 B = 0.003305 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.172196 B = 8471.230546 C = 8653.201524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.535 5.535 3 C 0.122 3.878 4 C -0.220 4.220 5 C -0.058 4.058 6 C -0.231 4.231 7 C 0.100 3.900 8 C -0.524 4.524 9 H 0.074 0.926 10 C 0.039 3.961 11 N -0.798 5.798 12 Si 1.064 2.936 13 H -0.274 1.274 14 H -0.276 1.276 15 H -0.275 1.275 16 C -0.222 4.222 17 C -0.073 4.073 18 C 0.064 3.936 19 C -0.117 4.117 20 H 0.085 0.915 21 C -0.153 4.153 22 C 0.052 3.948 23 O -0.391 6.391 24 C 0.066 3.934 25 H 0.017 0.983 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.299 0.701 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -11.926 -10.219 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.259 5.259 3 C -0.004 4.004 4 C -0.221 4.221 5 C -0.077 4.077 6 C -0.250 4.250 7 C 0.097 3.903 8 C -0.552 4.552 9 H 0.093 0.907 10 C -0.182 4.182 11 N -0.421 5.421 12 Si 0.888 3.112 13 H -0.199 1.199 14 H -0.201 1.201 15 H -0.200 1.200 16 C -0.241 4.241 17 C -0.092 4.092 18 C -0.065 4.065 19 C -0.136 4.136 20 H 0.103 0.897 21 C -0.191 4.191 22 C -0.024 4.024 23 O -0.311 6.311 24 C -0.010 4.010 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.971 -11.204 -9.116 14.477 hybrid contribution 0.717 -0.487 -1.557 1.782 sum 1.689 -11.692 -10.673 15.920 Atomic orbital electron populations 1.22428 0.87757 1.00906 1.01312 1.62124 1.07928 1.14861 1.40951 1.20716 0.98320 0.86132 0.95269 1.18767 0.99001 1.09034 0.95323 1.20366 0.97168 0.97084 0.93040 1.20930 0.98189 1.08834 0.97089 1.17669 0.89758 0.90328 0.92499 1.20574 1.26475 1.13596 0.94576 0.90748 1.27000 0.95803 0.92510 1.02927 1.70455 1.33063 1.32903 1.05702 0.83654 0.76570 0.77283 0.73713 1.19909 1.20148 1.20002 1.21103 1.00430 1.08010 0.94544 1.20440 0.95250 0.97180 0.96335 1.22065 1.00129 0.91939 0.92329 1.22755 1.00989 0.95269 0.94627 0.89721 1.23299 1.02141 0.95456 0.98171 1.23303 0.99623 0.96379 0.83128 1.88397 1.78499 1.33776 1.30438 1.23088 0.98916 0.82368 0.96604 0.96469 0.92335 0.90051 0.95838 0.91762 0.89351 0.89043 0.88760 0.87893 0.89789 0.95027 0.90791 0.90149 0.90278 0.90087 0.92481 0.90642 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.94 60.06 0.54 0.90 16 2 N -0.53 -8.14 4.57 -244.37 -1.12 -9.25 16 3 C 0.12 2.07 5.11 -4.98 -0.03 2.04 16 4 C -0.22 -4.60 4.90 -104.33 -0.51 -5.11 16 5 C -0.06 -1.28 9.67 -39.66 -0.38 -1.66 16 6 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 7 C 0.10 2.66 5.30 -106.82 -0.57 2.09 16 8 C -0.52 -14.02 8.98 -37.74 -0.34 -14.36 16 9 H 0.07 1.95 7.96 -52.49 -0.42 1.53 16 10 C 0.04 1.00 4.93 -17.34 -0.09 0.92 16 11 N -0.80 -21.25 12.32 55.55 0.68 -20.57 16 12 Si 1.06 21.64 30.00 -169.99 -5.10 16.54 16 13 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 14 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 15 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 16 C -0.22 -5.60 7.96 -38.87 -0.31 -5.91 16 17 C -0.07 -1.63 7.93 -39.66 -0.31 -1.95 16 18 C 0.06 0.77 4.28 -3.82 -0.02 0.75 16 19 C -0.12 -1.28 2.88 -88.68 -0.26 -1.54 16 20 H 0.08 0.93 6.43 -51.93 -0.33 0.60 16 21 C -0.15 -1.34 6.62 -24.49 -0.16 -1.50 16 22 C 0.05 0.50 7.78 38.18 0.30 0.80 16 23 O -0.39 -5.16 11.36 -35.23 -0.40 -5.56 16 24 C 0.07 0.85 7.22 37.88 0.27 1.12 16 25 H 0.02 0.24 8.14 -51.92 -0.42 -0.18 16 26 H 0.06 0.76 6.27 -51.93 -0.33 0.44 16 27 H 0.08 1.43 6.16 -51.93 -0.32 1.11 16 28 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 29 H 0.06 1.03 7.87 -51.92 -0.41 0.62 16 30 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 32 H 0.30 8.16 6.70 -40.82 -0.27 7.89 16 33 H 0.10 2.71 6.50 -52.49 -0.34 2.37 16 34 H 0.08 1.71 8.03 -52.49 -0.42 1.29 16 35 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16 36 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 1.02 7.76 -51.93 -0.40 0.61 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 334.46 15.07 5.04 5.04 Total: -1.00 -27.58 334.46 -9.80 -37.38 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.67 Total: 5.89 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: -2.24 Total: -29.47 kcal Atomic # 7 Polarization: -29.39 SS G_CDS: -0.43 Total: -29.82 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.40 Total: -5.56 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.10 Total: 16.54 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.58 -9.80 -37.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343544890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.551 kcal (2) G-P(sol) polarization free energy of solvation -27.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds