Wall clock time and date at job start Thu Apr 9 2020 13:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 110.99872 * 2 1 4 4 C 1.50698 * 109.46968 * 66.05069 * 3 2 1 5 5 C 1.38635 * 119.75492 * 89.99839 * 4 3 2 6 6 C 1.37611 * 120.25212 * 179.97438 * 5 4 3 7 7 C 1.40717 * 119.74429 * 359.97438 * 6 5 4 8 8 C 1.41393 * 120.24544 * 180.02562 * 7 6 5 9 9 H 1.07995 * 120.00167 * 334.84990 * 8 7 6 10 10 C 1.39947 * 120.00447 * 154.85088 * 8 7 6 11 11 N 1.30829 * 119.99580 * 334.27844 * 10 8 7 12 12 Si 1.86794 * 120.00413 * 154.27772 * 10 8 7 13 13 H 1.48504 * 109.47556 * 180.02562 * 12 10 8 14 14 H 1.48495 * 109.47307 * 60.00117 * 12 10 8 15 15 H 1.48499 * 109.47060 * 300.00218 * 12 10 8 16 16 C 1.40717 * 119.51251 * 0.27207 * 7 6 5 17 17 C 1.37622 * 119.74258 * 359.45159 * 16 7 6 18 18 C 1.46902 * 110.99740 * 236.04776 * 2 1 3 19 19 C 1.52998 * 109.47459 * 293.95332 * 18 2 1 20 20 H 1.08999 * 110.74779 * 57.01950 * 19 18 2 21 21 C 1.55306 * 110.85186 * 180.71694 * 19 18 2 22 22 C 1.54938 * 100.94206 * 152.32308 * 21 19 18 23 23 O 1.43651 * 105.13904 * 323.55503 * 22 21 19 24 24 C 1.43241 * 109.96605 * 24.42998 * 23 22 21 25 25 H 1.09010 * 109.47429 * 60.00167 * 1 2 3 26 26 H 1.09000 * 109.47228 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47491 * 300.00087 * 1 2 3 28 28 H 1.08998 * 109.47591 * 306.04470 * 3 2 1 29 29 H 1.09008 * 109.47003 * 186.04492 * 3 2 1 30 30 H 1.07997 * 119.87250 * 359.97438 * 5 4 3 31 31 H 1.07999 * 120.13162 * 179.97438 * 6 5 4 32 32 H 0.96996 * 120.00212 * 354.29995 * 11 10 8 33 33 H 1.07998 * 120.12873 * 179.72603 * 16 7 6 34 34 H 1.07997 * 119.87625 * 180.27232 * 17 16 7 35 35 H 1.08995 * 109.47433 * 53.95772 * 18 2 1 36 36 H 1.09001 * 109.46885 * 173.95295 * 18 2 1 37 37 H 1.08999 * 111.12196 * 270.24508 * 21 19 18 38 38 H 1.08996 * 111.12192 * 34.40361 * 21 19 18 39 39 H 1.09003 * 110.31496 * 204.64220 * 22 21 19 40 40 H 1.09007 * 110.39514 * 82.51733 * 22 21 19 41 41 H 1.08998 * 109.82547 * 238.76796 * 24 23 22 42 42 H 1.09003 * 109.82700 * 117.80784 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 6 2.5002 1.9613 2.3799 6 6 2.1833 2.5747 3.5703 7 6 0.9780 3.2915 3.6871 8 6 0.6421 3.9263 4.9050 9 1 1.0512 3.5609 5.8353 10 6 -0.2205 5.0283 4.9052 11 7 -0.3219 5.7798 3.8390 12 14 -1.2272 5.4264 6.4275 13 1 -2.0553 6.6323 6.1721 14 1 -0.3151 5.6847 7.5705 15 1 -2.1119 4.2782 6.7500 16 6 0.1070 3.3675 2.5845 17 6 0.4471 2.7510 1.4020 18 6 1.9954 -0.7660 -1.1376 19 6 1.6314 -2.2426 -0.9705 20 1 0.5525 -2.3662 -0.8772 21 6 2.1890 -3.0863 -2.1492 22 6 2.3662 -4.4654 -1.4657 23 8 2.7936 -4.1685 -0.1268 24 6 2.3615 -2.8543 0.2445 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.5611 1.9274 -0.8309 29 1 3.0797 1.3444 -0.1082 30 1 3.4248 1.4110 2.2877 31 1 2.8570 2.5063 4.4116 32 1 0.2599 5.6239 3.0787 33 1 -0.8227 3.9112 2.6646 34 1 -0.2178 2.8116 0.5531 35 1 1.5611 -0.3872 -2.0628 36 1 3.0796 -0.6611 -1.1757 37 1 1.4703 -3.1423 -2.9667 38 1 3.1451 -2.6937 -2.4954 39 1 3.1260 -5.0500 -1.9845 40 1 1.4196 -5.0058 -1.4497 41 1 3.2243 -2.2411 0.5046 42 1 1.6803 -2.9150 1.0932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343544890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:11 Heat of formation + Delta-G solvation = -53.370038 kcal Electronic energy + Delta-G solvation = -20940.422646 eV Core-core repulsion = 17883.634578 eV Total energy + Delta-G solvation = -3056.788067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.60990 -39.84276 -38.06040 -35.79550 -33.69898 -31.85499 -31.29298 -30.27979 -28.62321 -27.64121 -25.80848 -23.78736 -22.95971 -22.88547 -21.53611 -21.09956 -19.82981 -17.81782 -17.04568 -16.61295 -16.49661 -16.31108 -16.07231 -15.69967 -15.58566 -15.36268 -14.77578 -14.30856 -14.17792 -13.96598 -13.84494 -13.65492 -13.12337 -12.88857 -12.79888 -12.57804 -12.48754 -12.47795 -12.24561 -11.99398 -11.87516 -11.78657 -11.52641 -11.43620 -11.26538 -10.85006 -10.46715 -9.58708 -9.42150 -9.18820 -9.10610 -6.43807 0.88675 0.98399 1.49546 1.62320 1.79029 2.33008 2.61363 2.97622 3.09244 3.56148 3.66803 3.79988 3.97564 4.12552 4.22088 4.29700 4.35748 4.40717 4.44383 4.48660 4.51430 4.62895 4.69736 4.76826 4.79637 4.85021 4.88753 4.95124 4.98938 5.06925 5.09652 5.14970 5.26496 5.31316 5.45747 5.76591 5.81435 5.85509 6.03459 6.08681 6.19342 6.25662 6.28486 6.44084 6.82538 6.96155 8.04741 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036441 B = 0.003305 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.172196 B = 8471.230546 C = 8653.201524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.126 3.874 4 C -0.199 4.199 5 C -0.061 4.061 6 C -0.248 4.248 7 C 0.070 3.930 8 C -0.565 4.565 9 H 0.067 0.933 10 C 0.004 3.996 11 N -0.820 5.820 12 Si 1.116 2.884 13 H -0.270 1.270 14 H -0.258 1.258 15 H -0.265 1.265 16 C -0.238 4.238 17 C -0.073 4.073 18 C 0.068 3.932 19 C -0.112 4.112 20 H 0.086 0.914 21 C -0.142 4.142 22 C 0.044 3.956 23 O -0.416 6.416 24 C 0.066 3.934 25 H 0.028 0.972 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.283 0.717 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.088 -13.444 -12.245 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.001 4.001 4 C -0.200 4.200 5 C -0.080 4.080 6 C -0.267 4.267 7 C 0.068 3.932 8 C -0.593 4.593 9 H 0.085 0.915 10 C -0.211 4.211 11 N -0.444 5.444 12 Si 0.933 3.067 13 H -0.195 1.195 14 H -0.183 1.183 15 H -0.190 1.190 16 C -0.258 4.258 17 C -0.092 4.092 18 C -0.060 4.060 19 C -0.131 4.131 20 H 0.104 0.896 21 C -0.180 4.180 22 C -0.032 4.032 23 O -0.336 6.336 24 C -0.010 4.010 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.226 -12.747 -11.163 16.988 hybrid contribution 0.755 -0.215 -1.109 1.358 sum 1.981 -12.961 -12.272 17.959 Atomic orbital electron populations 1.22371 0.87670 1.01820 1.00251 1.61994 1.08111 1.13777 1.43199 1.20658 0.99513 0.87059 0.92854 1.19268 0.97314 1.06675 0.96745 1.20693 0.98370 0.96588 0.92342 1.21125 0.97864 1.09356 0.98379 1.17980 0.90814 0.91336 0.93089 1.20752 1.28888 1.15104 0.94603 0.91460 1.28393 0.96080 0.91686 1.04981 1.70571 1.33781 1.33911 1.06094 0.83029 0.75591 0.77402 0.70712 1.19458 1.18265 1.18984 1.21069 0.99958 1.09020 0.95743 1.20679 0.96171 0.96435 0.95892 1.22100 1.00457 0.91907 0.91510 1.22703 1.00883 0.94710 0.94841 0.89587 1.23279 1.02945 0.94061 0.97689 1.23556 1.00633 0.97286 0.81755 1.88373 1.78867 1.33848 1.32526 1.23010 0.98302 0.82549 0.97136 0.95348 0.90556 0.93179 0.94796 0.90148 0.86647 0.89041 0.90542 0.89805 0.87695 0.93520 0.90146 0.87952 0.89617 0.88469 0.91638 0.91720 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 8.94 127.69 1.14 1.88 16 2 N -0.55 -15.05 4.57 -927.05 -4.23 -19.28 16 3 C 0.13 3.88 5.11 85.56 0.44 4.31 16 4 C -0.20 -8.01 4.90 -19.67 -0.10 -8.11 16 5 C -0.06 -2.66 9.67 22.22 0.21 -2.44 16 6 C -0.25 -12.43 9.80 22.73 0.22 -12.21 16 7 C 0.07 3.87 5.30 -21.29 -0.11 3.75 16 8 C -0.56 -31.60 8.98 23.46 0.21 -31.39 16 9 H 0.07 3.70 7.96 -2.91 -0.02 3.68 16 10 C 0.00 0.22 4.93 85.26 0.42 0.64 16 11 N -0.82 -45.43 12.32 21.83 0.27 -45.16 16 12 Si 1.12 44.39 30.00 68.60 2.06 46.45 16 13 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 14 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 15 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 16 C -0.24 -12.47 7.96 22.73 0.18 -12.29 16 17 C -0.07 -3.24 7.93 22.22 0.18 -3.07 16 18 C 0.07 1.39 4.28 86.30 0.37 1.76 16 19 C -0.11 -2.11 2.88 -9.53 -0.03 -2.14 16 20 H 0.09 1.61 6.43 -2.39 -0.02 1.60 16 21 C -0.14 -1.94 6.62 32.05 0.21 -1.73 16 22 C 0.04 0.71 7.78 72.64 0.56 1.27 16 23 O -0.42 -10.28 11.36 -148.98 -1.69 -11.97 16 24 C 0.07 1.59 7.22 72.45 0.52 2.11 16 25 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.08 1.80 6.27 -2.39 -0.01 1.79 16 27 H 0.05 1.69 6.16 -2.39 -0.01 1.67 16 28 H 0.03 1.00 8.06 -2.39 -0.02 0.98 16 29 H 0.08 2.26 7.87 -2.38 -0.02 2.24 16 30 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 31 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.28 16.25 6.70 -92.71 -0.62 15.63 16 33 H 0.08 4.63 6.50 -2.91 -0.02 4.61 16 34 H 0.11 4.16 8.03 -2.91 -0.02 4.14 16 35 H 0.05 0.86 8.12 -2.39 -0.02 0.84 16 36 H 0.08 1.58 7.86 -2.39 -0.02 1.56 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.09 8.04 -2.39 -0.02 1.07 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 40 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.06 1.66 7.76 -2.39 -0.02 1.64 16 42 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -61.94 334.46 1.97 -59.98 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 1.13 Total: 27.62 kcal Atomic # 6 Polarization: -62.07 SS G_CDS: 4.44 Total: -57.63 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -3.97 Total: -64.45 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -1.69 Total: -11.97 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.06 Total: 46.45 kcal Total: -61.94 1.97 -59.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343544890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.605 kcal (2) G-P(sol) polarization free energy of solvation -61.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds