Wall clock time and date at job start Thu Apr 9 2020 13:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00627 * 2 1 4 4 C 1.53778 * 113.61948 * 210.00048 * 3 2 1 5 5 C 1.53784 * 87.08005 * 219.93353 * 4 3 2 6 6 N 1.46896 * 113.61220 * 139.98314 * 5 4 3 7 7 C 1.46904 * 111.00021 * 153.79092 * 6 5 4 8 8 H 1.08998 * 109.46919 * 325.27389 * 7 6 5 9 9 C 1.53001 * 109.47199 * 205.27382 * 7 6 5 10 10 C 1.50700 * 109.47319 * 65.57200 * 9 7 6 11 11 H 1.08007 * 119.99437 * 3.29393 * 10 9 7 12 12 C 1.37873 * 119.99863 * 183.29738 * 10 9 7 13 13 N 1.31525 * 119.99728 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00384 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47048 * 90.00054 * 14 12 10 16 16 H 1.48497 * 109.47440 * 210.00281 * 14 12 10 17 17 H 1.48502 * 109.47049 * 330.00450 * 14 12 10 18 18 C 1.50697 * 109.47117 * 85.27397 * 7 6 5 19 19 C 1.38240 * 119.99833 * 220.00307 * 18 7 6 20 20 C 1.38236 * 119.99769 * 179.97438 * 19 18 7 21 21 C 1.38234 * 120.00199 * 0.02562 * 20 19 18 22 22 C 1.38235 * 119.99937 * 359.94632 * 21 20 19 23 23 C 1.38230 * 120.00032 * 0.03372 * 22 21 20 24 24 C 1.53777 * 87.17467 * 25.38976 * 5 4 3 25 25 H 1.09006 * 109.47094 * 60.00272 * 1 2 3 26 26 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47035 * 300.00300 * 1 2 3 28 28 H 1.09010 * 112.84579 * 341.19537 * 3 2 1 29 29 H 1.09003 * 113.61577 * 105.38641 * 4 3 2 30 30 H 1.08997 * 113.69007 * 334.49128 * 4 3 2 31 31 H 1.09007 * 113.60941 * 270.79642 * 5 4 3 32 32 H 1.00900 * 111.00411 * 29.83397 * 6 5 4 33 33 H 1.08995 * 109.46953 * 185.57245 * 9 7 6 34 34 H 1.09006 * 109.46879 * 305.57165 * 9 7 6 35 35 H 0.96989 * 119.99780 * 179.97438 * 13 12 10 36 36 H 1.07997 * 119.99980 * 0.24863 * 19 18 7 37 37 H 1.07997 * 119.99980 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99927 * 179.97438 * 21 20 19 39 39 H 1.08005 * 120.00013 * 180.02562 * 22 21 20 40 40 H 1.08005 * 119.99873 * 179.97438 * 23 22 21 41 41 H 1.08999 * 113.61586 * 89.15315 * 24 5 4 42 42 H 1.09000 * 113.61774 * 220.06285 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3756 1.3718 -0.7045 5 6 3.8220 2.3198 0.4211 6 7 5.1966 2.0811 0.8808 7 6 5.7819 3.3034 1.4476 8 1 5.4119 4.1707 0.9009 9 6 7.3063 3.2401 1.3321 10 6 7.7012 3.2608 -0.1221 11 1 6.9447 3.3675 -0.8856 12 6 9.0281 3.1435 -0.4778 13 7 9.3728 3.1621 -1.7469 14 14 10.3364 2.9596 0.8427 15 1 10.5448 1.5189 1.1358 16 1 11.6093 3.5568 0.3650 17 1 9.8951 3.6570 2.0773 18 6 5.3926 3.4207 2.8987 19 6 5.0558 4.6532 3.4265 20 6 4.6982 4.7606 4.7575 21 6 4.6778 3.6358 5.5607 22 6 5.0140 2.4033 5.0328 23 6 5.3712 2.2957 3.7018 24 6 2.7530 1.6532 1.3029 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.3138 2.0789 -0.3238 29 1 3.3382 1.8457 -1.6854 30 1 3.9105 0.4221 -0.7133 31 1 3.6222 3.3707 0.2117 32 1 5.7699 1.7183 0.1339 33 1 7.7451 4.0988 1.8400 34 1 7.6677 2.3211 1.7937 35 1 10.3062 3.0799 -1.9971 36 1 5.0679 5.5313 2.7980 37 1 4.4355 5.7235 5.1700 38 1 4.3987 3.7199 6.6007 39 1 4.9977 1.5243 5.6602 40 1 5.6343 1.3328 3.2894 41 1 3.1163 0.7800 1.8447 42 1 2.2137 2.3539 1.9403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347418285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:28 Heat of formation + Delta-G solvation = -3.549817 kcal Electronic energy + Delta-G solvation = -21345.960058 eV Core-core repulsion = 18291.332358 eV Total energy + Delta-G solvation = -3054.627700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.52420 -38.72283 -36.54238 -34.77355 -32.42343 -30.52337 -30.11996 -28.98747 -26.76768 -25.47397 -24.67560 -22.69589 -22.06123 -21.63776 -19.66722 -19.22336 -17.09837 -16.75383 -16.20015 -15.57274 -15.21819 -14.92320 -14.81493 -14.41651 -14.27420 -13.90304 -13.37634 -12.94333 -12.79221 -12.56838 -12.28149 -12.15591 -12.10926 -11.87580 -11.49762 -11.32412 -11.11066 -10.80967 -10.65248 -10.52377 -10.43218 -10.21675 -9.91696 -9.77229 -9.36646 -9.25671 -8.59944 -8.50137 -8.16614 -7.83259 -6.11177 -4.10564 1.78925 1.84249 3.29664 3.37366 3.42457 3.82825 4.23071 4.41396 4.75540 4.86395 4.88957 4.99944 5.12524 5.25909 5.26472 5.27803 5.32652 5.33777 5.39779 5.55487 5.56155 5.67446 5.93705 5.97242 6.01301 6.06592 6.15182 6.21848 6.33807 6.38210 6.43784 6.49539 6.55482 6.83925 6.90172 7.12645 7.15326 7.21794 7.31671 7.43962 7.69805 7.86672 8.16352 8.41981 8.89954 9.51350 11.01457 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012098 B = 0.006261 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.944908 B = 4470.977023 C = 6292.864962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.058 3.942 4 C -0.139 4.139 5 C 0.069 3.931 6 N -0.665 5.665 7 C 0.135 3.865 8 H 0.047 0.953 9 C -0.009 4.009 10 C -0.526 4.526 11 H 0.071 0.929 12 C 0.073 3.927 13 N -0.899 5.899 14 Si 0.879 3.121 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.265 1.265 18 C -0.055 4.055 19 C -0.124 4.124 20 C -0.128 4.128 21 C -0.137 4.137 22 C -0.130 4.130 23 C -0.088 4.088 24 C -0.136 4.136 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.364 0.636 33 H 0.021 0.979 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.128 0.872 41 H 0.094 0.906 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.898 -1.616 8.436 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.000 4.000 4 C -0.177 4.177 5 C -0.042 4.042 6 N -0.299 5.299 7 C 0.026 3.974 8 H 0.065 0.935 9 C -0.047 4.047 10 C -0.563 4.563 11 H 0.089 0.911 12 C -0.129 4.129 13 N -0.537 5.537 14 Si 0.706 3.294 15 H -0.201 1.201 16 H -0.215 1.215 17 H -0.190 1.190 18 C -0.056 4.056 19 C -0.142 4.142 20 C -0.146 4.146 21 C -0.155 4.155 22 C -0.148 4.148 23 C -0.106 4.106 24 C -0.175 4.175 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.188 0.812 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.146 0.854 41 H 0.113 0.887 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.796 -2.049 8.889 17.382 hybrid contribution 0.711 0.757 -0.176 1.053 sum -14.085 -1.292 8.713 16.612 Atomic orbital electron populations 1.22736 0.81887 1.02335 0.99628 1.87958 1.19021 1.27830 1.94656 1.23682 0.93658 0.84554 0.98149 1.23494 0.95112 1.01157 0.97944 1.22682 0.90404 0.96773 0.94386 1.60519 1.01713 1.29291 1.38404 1.20483 0.96859 0.91036 0.89056 0.93529 1.19745 0.89595 0.97245 0.98113 1.21024 0.93667 1.51118 0.90527 0.91089 1.24966 0.98607 0.94243 0.95132 1.69909 1.17710 1.50262 1.15865 0.86790 0.81145 0.78820 0.82653 1.20126 1.21478 1.19000 1.20212 0.95957 0.92695 0.96687 1.21053 1.00389 0.97391 0.95402 1.20976 1.01406 0.98061 0.94139 1.20979 1.02197 0.93175 0.99158 1.21129 1.00810 0.97143 0.95754 1.21054 0.97781 0.99220 0.92531 1.23591 0.96515 1.01086 0.96287 0.94343 0.90032 0.94286 0.90103 0.91253 0.88423 0.91343 0.81201 0.96046 0.95780 0.92648 0.86660 0.86941 0.87107 0.86884 0.85381 0.88707 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.85 101.05 1.10 1.40 16 2 O -0.38 -5.14 10.72 -35.23 -0.38 -5.52 16 3 C 0.06 0.75 4.31 -25.83 -0.11 0.64 16 4 C -0.14 -2.00 7.47 -25.92 -0.19 -2.20 16 5 C 0.07 1.06 4.02 -66.90 -0.27 0.79 16 6 N -0.67 -11.95 5.61 -100.10 -0.56 -12.51 16 7 C 0.14 2.62 2.18 -68.86 -0.15 2.47 16 8 H 0.05 0.93 7.32 -51.93 -0.38 0.55 16 9 C -0.01 -0.22 3.60 -27.88 -0.10 -0.32 16 10 C -0.53 -14.09 8.63 -34.44 -0.30 -14.38 16 11 H 0.07 2.03 7.87 -52.48 -0.41 1.62 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 14 Si 0.88 21.47 27.40 -169.99 -4.66 16.81 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.27 -6.35 6.64 56.52 0.38 -5.97 16 18 C -0.05 -0.96 4.83 -104.62 -0.51 -1.47 16 19 C -0.12 -1.99 9.67 -39.58 -0.38 -2.37 16 20 C -0.13 -1.81 10.05 -39.58 -0.40 -2.20 16 21 C -0.14 -1.87 10.05 -39.58 -0.40 -2.27 16 22 C -0.13 -1.89 10.05 -39.59 -0.40 -2.29 16 23 C -0.09 -1.46 9.32 -39.58 -0.37 -1.83 16 24 C -0.14 -1.92 7.73 -25.83 -0.20 -2.12 16 25 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.92 7.87 -51.92 -0.41 0.51 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.07 1.07 7.46 -51.93 -0.39 0.69 16 32 H 0.36 7.28 7.11 -39.29 -0.28 7.00 16 33 H 0.02 0.51 7.43 -51.93 -0.39 0.13 16 34 H 0.02 0.56 7.39 -51.93 -0.38 0.18 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 36 H 0.12 1.74 8.04 -52.49 -0.42 1.32 16 37 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.13 2.18 7.72 -52.48 -0.41 1.77 16 41 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -29.27 344.45 -9.26 -38.53 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.85 Total: 7.76 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: -2.77 Total: -24.19 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.21 Total: -38.59 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.38 Total: -5.52 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.66 Total: 16.81 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.27 -9.26 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347418285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.977 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds