Wall clock time and date at job start Thu Apr 9 2020 13:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47200 * 2 1 4 4 N 1.46898 * 109.47112 * 119.99728 * 2 1 3 5 5 C 1.46905 * 110.99901 * 275.00027 * 4 2 1 6 6 C 1.50702 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.38637 * 119.74898 * 90.00085 * 6 5 4 8 8 C 1.37624 * 120.24722 * 179.97438 * 7 6 5 9 9 C 1.40711 * 119.74269 * 359.97438 * 8 7 6 10 10 C 1.41398 * 120.24178 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99716 * 155.56930 * 10 9 8 12 12 C 1.39944 * 120.00134 * 335.30554 * 10 9 8 13 13 N 1.30821 * 119.99661 * 342.55151 * 12 10 9 14 14 Si 1.86796 * 119.99958 * 162.56169 * 12 10 9 15 15 H 1.48497 * 109.47620 * 59.99793 * 14 12 10 16 16 H 1.48504 * 109.47201 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46993 * 299.99311 * 14 12 10 18 18 C 1.40714 * 119.51475 * 0.27850 * 9 8 7 19 19 C 1.37612 * 119.74317 * 359.46176 * 18 9 8 20 20 C 1.52992 * 109.47299 * 239.99766 * 2 1 3 21 21 H 1.09001 * 110.33725 * 187.24973 * 20 2 1 22 22 C 1.54479 * 110.37477 * 64.99830 * 20 2 1 23 23 C 1.54507 * 104.06732 * 217.19368 * 22 20 2 24 24 C 1.54476 * 104.06222 * 359.97438 * 23 22 20 25 25 O 1.44430 * 104.80366 * 23.98181 * 24 23 22 26 26 H 1.09006 * 109.47185 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47044 * 299.99844 * 1 2 3 28 28 H 1.08999 * 109.47230 * 59.99977 * 1 2 3 29 29 H 1.00892 * 111.00087 * 38.95262 * 4 2 1 30 30 H 1.08993 * 109.47238 * 60.00322 * 5 4 2 31 31 H 1.08997 * 109.47222 * 299.99688 * 5 4 2 32 32 H 1.07997 * 119.87818 * 359.97438 * 7 6 5 33 33 H 1.07993 * 120.12560 * 179.97438 * 8 7 6 34 34 H 0.97001 * 119.99746 * 180.02562 * 13 12 10 35 35 H 1.08002 * 120.13270 * 179.70378 * 18 9 8 36 36 H 1.08001 * 119.87741 * 180.27592 * 19 18 9 37 37 H 1.09005 * 110.50922 * 335.83657 * 22 20 2 38 38 H 1.09004 * 110.51492 * 98.40471 * 22 20 2 39 39 H 1.09003 * 110.51544 * 118.64272 * 23 22 20 40 40 H 1.08998 * 110.51357 * 241.21584 * 23 22 20 41 41 H 1.08998 * 110.37512 * 142.81289 * 24 23 22 42 42 H 1.08998 * 110.37382 * 265.14821 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.0824 0.2228 2.3469 6 6 2.5885 -0.5213 3.5557 7 6 3.9498 -0.5699 3.8136 8 6 4.4231 -1.2460 4.9148 9 6 3.5195 -1.8890 5.7808 10 6 3.9943 -2.5871 6.9151 11 1 3.3477 -2.7358 7.7673 12 6 5.3001 -3.0902 6.9311 13 7 5.9626 -3.2255 5.8113 14 14 6.0967 -3.5687 8.5515 15 1 5.2936 -4.6348 9.2024 16 1 7.4714 -4.0702 8.2983 17 1 6.1586 -2.3820 9.4421 18 6 2.1403 -1.8376 5.5063 19 6 1.6891 -1.1511 4.4022 20 6 2.0400 -0.7213 -1.2491 21 1 3.1222 -0.8425 -1.2012 22 6 1.6423 0.0598 -2.5212 23 6 1.3102 -1.0434 -3.5507 24 6 1.5472 -2.3605 -2.7791 25 8 1.3944 -2.0056 -1.3875 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.4496 -1.4978 1.4101 30 1 1.0871 0.6164 2.5525 31 1 2.7588 1.0463 2.1182 32 1 4.6414 -0.0753 3.1477 33 1 5.4840 -1.2829 5.1136 34 1 6.8676 -3.5746 5.8224 35 1 1.4383 -2.3316 6.1616 36 1 0.6308 -1.1065 4.1919 37 1 0.7665 0.6801 -2.3303 38 1 2.4742 0.6721 -2.8693 39 1 0.2703 -0.9686 -3.8688 40 1 1.9771 -0.9770 -4.4103 41 1 0.8050 -3.1062 -3.0642 42 1 2.5535 -2.7346 -2.9671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348195731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:30 Heat of formation + Delta-G solvation = -39.852235 kcal Electronic energy + Delta-G solvation = -20769.242896 eV Core-core repulsion = 17713.041005 eV Total energy + Delta-G solvation = -3056.201891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.65458 -37.73318 -36.03947 -33.72676 -32.20351 -31.40408 -29.38478 -29.05287 -27.72636 -26.05763 -23.95405 -22.84019 -21.39217 -20.89081 -20.25454 -19.71894 -17.23696 -16.61101 -16.02499 -15.34649 -15.24001 -14.84742 -14.57532 -14.08902 -13.87220 -13.76747 -13.27718 -13.06799 -12.54350 -12.43522 -11.94086 -11.89172 -11.79260 -11.60024 -11.58498 -11.42635 -11.09417 -10.99196 -10.95414 -10.84318 -10.63284 -10.34968 -10.32715 -9.68560 -9.53055 -9.30564 -9.07576 -7.93149 -7.37645 -7.23469 -6.70091 -4.29666 2.80732 3.09191 3.11925 3.14368 3.23288 3.92227 3.96881 4.37481 4.51344 4.67704 4.81413 4.91065 5.06903 5.18664 5.26898 5.37788 5.47910 5.58382 5.60452 5.66185 5.76115 5.79891 5.85555 5.91954 5.95573 6.08357 6.12556 6.30545 6.35329 6.42360 6.50829 6.89477 7.01839 7.12707 7.36082 7.42649 7.52543 7.67785 7.84248 7.97598 8.11384 8.21731 8.36422 8.70611 8.95255 9.04212 10.24134 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031558 B = 0.003290 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.044512 B = 8507.380893 C = 8910.101210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 H 0.083 0.917 4 N -0.676 5.676 5 C 0.124 3.876 6 C -0.212 4.212 7 C -0.079 4.079 8 C -0.167 4.167 9 C 0.112 3.888 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.076 3.924 13 N -0.792 5.792 14 Si 0.907 3.093 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.264 1.264 18 C -0.227 4.227 19 C -0.085 4.085 20 C 0.087 3.913 21 H 0.075 0.925 22 C -0.155 4.155 23 C -0.154 4.154 24 C 0.044 3.956 25 O -0.363 6.363 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.346 0.654 30 H 0.018 0.982 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.280 0.720 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.132 5.192 -14.510 16.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.022 4.022 3 H 0.101 0.899 4 N -0.307 5.307 5 C -0.003 4.003 6 C -0.214 4.214 7 C -0.098 4.098 8 C -0.187 4.187 9 C 0.110 3.890 10 C -0.495 4.495 11 H 0.094 0.906 12 C -0.142 4.142 13 N -0.417 5.417 14 Si 0.732 3.268 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.189 1.189 18 C -0.247 4.247 19 C -0.104 4.104 20 C 0.029 3.971 21 H 0.093 0.907 22 C -0.193 4.193 23 C -0.192 4.192 24 C -0.034 4.034 25 O -0.282 6.282 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.166 0.834 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.341 5.060 -14.591 16.341 hybrid contribution -0.421 -0.161 0.613 0.761 sum -5.762 4.899 -13.978 15.893 Atomic orbital electron populations 1.22436 0.97233 1.02764 1.01260 1.21570 0.92992 0.97134 0.90519 0.89908 1.60680 1.57035 1.09771 1.03215 1.20595 0.97412 0.93767 0.88553 1.18911 0.93717 1.10144 0.98579 1.20492 0.93635 0.98924 0.96764 1.21307 0.99902 1.00546 0.96899 1.17611 0.90785 0.88815 0.91810 1.19556 0.97134 1.31075 1.01703 0.90610 1.25899 0.97140 0.93635 0.97491 1.69831 1.11664 1.32879 1.27343 0.86390 0.78322 0.79646 0.82463 1.19074 1.20372 1.18879 1.20928 0.95750 1.07834 1.00146 1.20352 0.96292 0.98147 0.95600 1.23089 0.97287 0.83120 0.93630 0.90662 1.23066 1.02306 0.98541 0.95379 1.22912 1.02251 0.95339 0.98689 1.23349 1.01144 0.96628 0.82240 1.89168 1.77787 1.36069 1.25127 0.91567 0.92918 0.92643 0.83435 0.96397 0.92176 0.89531 0.86557 0.90878 0.89221 0.89974 0.90489 0.90718 0.91019 0.90868 0.89522 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 8.74 37.16 0.32 -1.84 16 2 C 0.09 1.18 2.50 -67.72 -0.17 1.01 16 3 H 0.08 1.04 7.80 -51.93 -0.40 0.63 16 4 N -0.68 -11.42 6.24 -108.00 -0.67 -12.09 16 5 C 0.12 2.23 5.60 -4.97 -0.03 2.20 16 6 C -0.21 -4.68 5.42 -104.33 -0.56 -5.25 16 7 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 8 C -0.17 -4.44 8.70 -38.87 -0.34 -4.78 16 9 C 0.11 3.06 5.57 -106.83 -0.60 2.47 16 10 C -0.47 -12.61 9.05 -37.74 -0.34 -12.95 16 11 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 12 C 0.08 1.95 5.15 -17.34 -0.09 1.86 16 13 N -0.79 -20.94 10.95 55.55 0.61 -20.33 16 14 Si 0.91 18.98 29.59 -169.99 -5.03 13.95 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 16 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 17 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 18 C -0.23 -5.71 9.80 -38.88 -0.38 -6.09 16 19 C -0.09 -1.94 9.67 -39.66 -0.38 -2.32 16 20 C 0.09 1.10 3.23 -25.96 -0.08 1.01 16 21 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 22 C -0.15 -1.46 6.47 -25.16 -0.16 -1.62 16 23 C -0.15 -1.30 7.09 -25.17 -0.18 -1.48 16 24 C 0.04 0.45 7.63 37.93 0.29 0.74 16 25 O -0.36 -5.05 10.35 -35.23 -0.36 -5.42 16 26 H 0.07 0.88 7.49 -51.93 -0.39 0.49 16 27 H 0.05 0.65 7.45 -51.93 -0.39 0.26 16 28 H 0.05 0.58 6.39 -51.93 -0.33 0.24 16 29 H 0.35 6.23 8.46 -39.30 -0.33 5.90 16 30 H 0.02 0.30 7.37 -51.93 -0.38 -0.08 16 31 H 0.06 1.03 7.99 -51.93 -0.42 0.62 16 32 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.12 3.19 6.16 -52.49 -0.32 2.87 16 34 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 35 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 36 H 0.08 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.08 0.69 6.11 -51.93 -0.32 0.37 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -28.20 337.20 -10.10 -38.30 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.64 Total: 9.83 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -3.09 Total: -29.32 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: -0.07 Total: -32.43 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.36 Total: -5.42 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.20 -10.10 -38.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348195731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.548 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds