Wall clock time and date at job start Thu Apr 9 2020 13:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47200 * 2 1 4 4 N 1.46898 * 109.47112 * 119.99728 * 2 1 3 5 5 C 1.46905 * 110.99901 * 275.00027 * 4 2 1 6 6 C 1.50702 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.38637 * 119.74898 * 90.00085 * 6 5 4 8 8 C 1.37624 * 120.24722 * 179.97438 * 7 6 5 9 9 C 1.40711 * 119.74269 * 359.97438 * 8 7 6 10 10 C 1.41398 * 120.24178 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99716 * 155.56930 * 10 9 8 12 12 C 1.39944 * 120.00134 * 335.30554 * 10 9 8 13 13 N 1.30821 * 119.99661 * 342.55151 * 12 10 9 14 14 Si 1.86796 * 119.99958 * 162.56169 * 12 10 9 15 15 H 1.48497 * 109.47620 * 59.99793 * 14 12 10 16 16 H 1.48504 * 109.47201 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46993 * 299.99311 * 14 12 10 18 18 C 1.40714 * 119.51475 * 0.27850 * 9 8 7 19 19 C 1.37612 * 119.74317 * 359.46176 * 18 9 8 20 20 C 1.52992 * 109.47299 * 239.99766 * 2 1 3 21 21 H 1.09001 * 110.33725 * 187.24973 * 20 2 1 22 22 C 1.54479 * 110.37477 * 64.99830 * 20 2 1 23 23 C 1.54507 * 104.06732 * 217.19368 * 22 20 2 24 24 C 1.54476 * 104.06222 * 359.97438 * 23 22 20 25 25 O 1.44430 * 104.80366 * 23.98181 * 24 23 22 26 26 H 1.09006 * 109.47185 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47044 * 299.99844 * 1 2 3 28 28 H 1.08999 * 109.47230 * 59.99977 * 1 2 3 29 29 H 1.00892 * 111.00087 * 38.95262 * 4 2 1 30 30 H 1.08993 * 109.47238 * 60.00322 * 5 4 2 31 31 H 1.08997 * 109.47222 * 299.99688 * 5 4 2 32 32 H 1.07997 * 119.87818 * 359.97438 * 7 6 5 33 33 H 1.07993 * 120.12560 * 179.97438 * 8 7 6 34 34 H 0.97001 * 119.99746 * 180.02562 * 13 12 10 35 35 H 1.08002 * 120.13270 * 179.70378 * 18 9 8 36 36 H 1.08001 * 119.87741 * 180.27592 * 19 18 9 37 37 H 1.09005 * 110.50922 * 335.83657 * 22 20 2 38 38 H 1.09004 * 110.51492 * 98.40471 * 22 20 2 39 39 H 1.09003 * 110.51544 * 118.64272 * 23 22 20 40 40 H 1.08998 * 110.51357 * 241.21584 * 23 22 20 41 41 H 1.08998 * 110.37512 * 142.81289 * 24 23 22 42 42 H 1.08998 * 110.37382 * 265.14821 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 2.0824 0.2228 2.3469 6 6 2.5885 -0.5213 3.5557 7 6 3.9498 -0.5699 3.8136 8 6 4.4231 -1.2460 4.9148 9 6 3.5195 -1.8890 5.7808 10 6 3.9943 -2.5871 6.9151 11 1 3.3477 -2.7358 7.7673 12 6 5.3001 -3.0902 6.9311 13 7 5.9626 -3.2255 5.8113 14 14 6.0967 -3.5687 8.5515 15 1 5.2936 -4.6348 9.2024 16 1 7.4714 -4.0702 8.2983 17 1 6.1586 -2.3820 9.4421 18 6 2.1403 -1.8376 5.5063 19 6 1.6891 -1.1511 4.4022 20 6 2.0400 -0.7213 -1.2491 21 1 3.1222 -0.8425 -1.2012 22 6 1.6423 0.0598 -2.5212 23 6 1.3102 -1.0434 -3.5507 24 6 1.5472 -2.3605 -2.7791 25 8 1.3944 -2.0056 -1.3875 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.4496 -1.4978 1.4101 30 1 1.0871 0.6164 2.5525 31 1 2.7588 1.0463 2.1182 32 1 4.6414 -0.0753 3.1477 33 1 5.4840 -1.2829 5.1136 34 1 6.8676 -3.5746 5.8224 35 1 1.4383 -2.3316 6.1616 36 1 0.6308 -1.1065 4.1919 37 1 0.7665 0.6801 -2.3303 38 1 2.4742 0.6721 -2.8693 39 1 0.2703 -0.9686 -3.8688 40 1 1.9771 -0.9770 -4.4103 41 1 0.8050 -3.1062 -3.0642 42 1 2.5535 -2.7346 -2.9671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348195731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:29 Heat of formation + Delta-G solvation = -56.006016 kcal Electronic energy + Delta-G solvation = -20769.943376 eV Core-core repulsion = 17713.041005 eV Total energy + Delta-G solvation = -3056.902372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.58454 -39.52466 -37.36932 -35.54564 -33.24477 -32.68763 -31.19871 -30.70780 -28.69420 -27.70909 -25.23476 -24.17803 -22.83609 -22.20274 -21.67157 -21.10326 -19.20143 -17.59562 -17.16673 -16.91890 -16.33593 -16.15736 -15.74174 -15.69827 -15.52505 -14.93163 -14.64633 -14.35128 -14.11259 -13.78374 -13.65143 -13.34257 -13.14025 -12.77038 -12.71606 -12.64117 -12.53358 -12.37987 -12.25874 -12.12324 -11.92580 -11.76502 -11.39750 -11.32454 -11.18964 -10.98372 -10.62370 -9.32639 -9.31268 -9.07637 -8.61263 -6.31875 0.97577 1.17239 1.37630 1.49173 1.53829 2.21469 2.70593 3.07114 3.35195 3.72842 3.80343 3.99644 4.08617 4.13011 4.21842 4.31249 4.38468 4.45091 4.52000 4.56824 4.61735 4.66581 4.79623 4.86954 4.88643 4.92357 5.00386 5.06872 5.08614 5.17686 5.18390 5.25619 5.37189 5.41162 5.49117 5.73491 5.96483 6.01230 6.12165 6.24325 6.34235 6.41585 6.54195 6.73252 6.96202 7.06730 8.35317 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031558 B = 0.003290 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.044512 B = 8507.380893 C = 8910.101210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.088 3.912 3 H 0.095 0.905 4 N -0.690 5.690 5 C 0.132 3.868 6 C -0.200 4.200 7 C -0.087 4.087 8 C -0.191 4.191 9 C 0.079 3.921 10 C -0.505 4.505 11 H 0.074 0.926 12 C 0.034 3.966 13 N -0.827 5.827 14 Si 0.983 3.017 15 H -0.260 1.260 16 H -0.267 1.267 17 H -0.260 1.260 18 C -0.244 4.244 19 C -0.086 4.086 20 C 0.083 3.917 21 H 0.056 0.944 22 C -0.148 4.148 23 C -0.147 4.147 24 C 0.034 3.966 25 O -0.392 6.392 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.338 0.662 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.287 0.713 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 6.204 -15.946 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 H 0.113 0.887 4 N -0.320 5.320 5 C 0.004 3.996 6 C -0.201 4.201 7 C -0.105 4.105 8 C -0.211 4.211 9 C 0.076 3.924 10 C -0.534 4.534 11 H 0.092 0.908 12 C -0.181 4.181 13 N -0.453 5.453 14 Si 0.804 3.196 15 H -0.184 1.184 16 H -0.191 1.191 17 H -0.185 1.185 18 C -0.263 4.263 19 C -0.104 4.104 20 C 0.025 3.975 21 H 0.074 0.926 22 C -0.186 4.186 23 C -0.185 4.185 24 C -0.043 4.043 25 O -0.312 6.312 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.156 0.844 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.130 0.870 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.231 6.084 -16.053 18.263 hybrid contribution -0.227 -0.443 0.906 1.034 sum -6.458 5.641 -15.147 17.405 Atomic orbital electron populations 1.22329 0.96038 1.02122 1.02290 1.21682 0.93928 0.97411 0.89141 0.88663 1.60604 1.57811 1.09730 1.03880 1.20505 0.98349 0.93477 0.87227 1.19376 0.92833 1.08433 0.99472 1.20736 0.95076 0.98561 0.96158 1.21273 0.99122 1.02250 0.98418 1.17961 0.91976 0.89787 0.92630 1.19814 0.98647 1.32878 1.02107 0.90808 1.26776 0.97070 0.93021 1.01207 1.69893 1.12231 1.33630 1.29500 0.85247 0.77563 0.79384 0.77446 1.18399 1.19141 1.18450 1.21149 0.95216 1.08660 1.01311 1.20680 0.98052 0.97109 0.94587 1.23087 0.96167 0.83410 0.94849 0.92566 1.23044 1.03154 0.98606 0.93832 1.22900 1.03400 0.93536 0.98633 1.23560 1.01520 0.98131 0.81082 1.89137 1.77935 1.36834 1.27292 0.93006 0.92954 0.90497 0.84382 0.94656 0.91078 0.88034 0.88395 0.90225 0.88766 0.86953 0.89567 0.89378 0.89924 0.89160 0.88498 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 8.74 71.98 0.63 -3.05 16 2 C 0.09 2.16 2.50 44.91 0.11 2.28 16 3 H 0.10 2.10 7.80 -2.39 -0.02 2.08 16 4 N -0.69 -22.28 6.24 -495.59 -3.09 -25.37 16 5 C 0.13 4.45 5.60 85.56 0.48 4.93 16 6 C -0.20 -8.63 5.42 -19.67 -0.11 -8.74 16 7 C -0.09 -4.18 9.67 22.22 0.21 -3.96 16 8 C -0.19 -10.53 8.70 22.73 0.20 -10.33 16 9 C 0.08 4.45 5.57 -21.29 -0.12 4.33 16 10 C -0.50 -28.42 9.05 23.46 0.21 -28.21 16 11 H 0.07 4.00 7.91 -2.91 -0.02 3.97 16 12 C 0.03 1.77 5.15 85.26 0.44 2.21 16 13 N -0.83 -45.13 10.95 21.83 0.24 -44.90 16 14 Si 0.98 39.54 29.59 68.60 2.03 41.57 16 15 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 16 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 18 C -0.24 -12.48 9.80 22.73 0.22 -12.26 16 19 C -0.09 -3.84 9.67 22.22 0.21 -3.62 16 20 C 0.08 1.96 3.23 31.09 0.10 2.06 16 21 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 22 C -0.15 -2.37 6.47 31.61 0.20 -2.16 16 23 C -0.15 -2.06 7.09 31.61 0.22 -1.84 16 24 C 0.03 0.64 7.63 72.48 0.55 1.20 16 25 O -0.39 -10.55 10.35 -148.98 -1.54 -12.09 16 26 H 0.05 1.29 7.49 -2.38 -0.02 1.27 16 27 H 0.05 1.14 7.45 -2.39 -0.02 1.12 16 28 H 0.08 1.34 6.39 -2.39 -0.02 1.32 16 29 H 0.34 11.83 8.46 -89.70 -0.76 11.07 16 30 H 0.04 1.08 7.37 -2.39 -0.02 1.06 16 31 H 0.07 2.25 7.99 -2.39 -0.02 2.23 16 32 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 33 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 34 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 35 H 0.09 4.59 8.06 -2.91 -0.02 4.56 16 36 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.09 1.22 6.11 -2.38 -0.01 1.21 16 38 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -62.79 337.20 1.46 -61.33 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.24 Total: 36.62 kcal Atomic # 6 Polarization: -60.75 SS G_CDS: 3.58 Total: -57.17 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -2.85 Total: -70.27 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -1.54 Total: -12.09 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -62.79 1.46 -61.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348195731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.326 kcal (2) G-P(sol) polarization free energy of solvation -62.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds