Wall clock time and date at job start Thu Apr 9 2020 13:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47137 * 2 1 4 4 N 1.46895 * 109.46936 * 120.00616 * 2 1 3 5 5 C 1.46906 * 110.99937 * 274.99658 * 4 2 1 6 6 C 1.50696 * 109.47106 * 180.02562 * 5 4 2 7 7 C 1.38633 * 119.75075 * 269.72634 * 6 5 4 8 8 C 1.37616 * 120.25012 * 179.72401 * 7 6 5 9 9 C 1.40713 * 119.74447 * 0.56875 * 8 7 6 10 10 C 1.41396 * 120.24798 * 179.68124 * 9 8 7 11 11 H 1.07999 * 119.99714 * 24.41554 * 10 9 8 12 12 C 1.39944 * 120.00044 * 204.41319 * 10 9 8 13 13 N 1.30821 * 120.00280 * 17.86238 * 12 10 9 14 14 Si 1.86805 * 119.99925 * 197.85364 * 12 10 9 15 15 H 1.48501 * 109.47025 * 60.00325 * 14 12 10 16 16 H 1.48497 * 109.47228 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47204 * 300.00671 * 14 12 10 18 18 C 1.40720 * 119.51095 * 359.70692 * 9 8 7 19 19 C 1.37621 * 119.74454 * 359.97438 * 18 9 8 20 20 C 1.53001 * 109.46829 * 240.00569 * 2 1 3 21 21 H 1.09001 * 110.27586 * 64.29866 * 20 2 1 22 22 C 1.54951 * 110.30556 * 186.39100 * 20 2 1 23 23 C 1.55413 * 100.89100 * 155.28753 * 22 20 2 24 24 C 1.54384 * 102.31022 * 325.98493 * 23 22 20 25 25 O 1.43244 * 107.58550 * 21.29252 * 24 23 22 26 26 H 1.09000 * 109.47035 * 299.99675 * 1 2 3 27 27 H 1.09001 * 109.47228 * 59.99610 * 1 2 3 28 28 H 1.09003 * 109.47084 * 179.97438 * 1 2 3 29 29 H 1.00893 * 111.00682 * 38.95586 * 4 2 1 30 30 H 1.09005 * 109.46906 * 300.00306 * 5 4 2 31 31 H 1.08997 * 109.47065 * 60.00512 * 5 4 2 32 32 H 1.08004 * 119.87575 * 359.97438 * 7 6 5 33 33 H 1.07998 * 120.12913 * 180.28284 * 8 7 6 34 34 H 0.97001 * 119.99895 * 180.02562 * 13 12 10 35 35 H 1.08007 * 120.12747 * 179.97438 * 18 9 8 36 36 H 1.07993 * 119.87196 * 179.97438 * 19 18 9 37 37 H 1.09003 * 111.12118 * 273.27364 * 22 20 2 38 38 H 1.08995 * 111.12709 * 37.44235 * 22 20 2 39 39 H 1.09001 * 110.88235 * 207.75006 * 23 22 20 40 40 H 1.08999 * 110.76523 * 84.17020 * 23 22 20 41 41 H 1.08993 * 109.83810 * 261.77317 * 24 23 22 42 42 H 1.09008 * 109.90087 * 140.84152 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 2.0825 0.2224 2.3469 6 6 2.5885 -0.5218 3.5556 7 6 1.6888 -1.1478 4.4045 8 6 2.1399 -1.8350 5.5081 9 6 3.5194 -1.8907 5.7800 10 6 3.9942 -2.5881 6.9147 11 1 3.4041 -3.3835 7.3456 12 6 5.2286 -2.2479 7.4793 13 7 5.7786 -1.0936 7.2026 14 14 6.0910 -3.4418 8.6284 15 1 6.3635 -4.7119 7.9088 16 1 7.3721 -2.8483 9.0884 17 1 5.2226 -3.7143 9.8018 18 6 4.4231 -1.2467 4.9146 19 6 3.9498 -0.5708 3.8132 20 6 2.0400 -0.7211 -1.2493 21 1 1.7478 -0.1751 -2.1464 22 6 3.5808 -0.8741 -1.1907 23 6 3.7884 -2.1101 -2.1096 24 6 2.5224 -2.9471 -1.8264 25 8 1.5292 -2.0630 -1.2938 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.4496 -1.4980 1.4099 30 1 2.7589 1.0460 2.1182 31 1 1.0871 0.6161 2.5526 32 1 0.6300 -1.0993 4.1967 33 1 1.4376 -2.3258 6.1656 34 1 6.6345 -0.8580 7.5937 35 1 5.4839 -1.2828 5.1140 36 1 4.6414 -0.0755 3.1479 37 1 4.0786 0.0068 -1.5962 38 1 3.9167 -1.0801 -0.1745 39 1 4.6871 -2.6582 -1.8265 40 1 3.8292 -1.8106 -3.1568 41 1 2.7499 -3.7278 -1.1006 42 1 2.1600 -3.3963 -2.7511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348195732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:31 Heat of formation + Delta-G solvation = -40.938447 kcal Electronic energy + Delta-G solvation = -21036.830401 eV Core-core repulsion = 17980.581408 eV Total energy + Delta-G solvation = -3056.248993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.53172 -37.73252 -36.02376 -33.74227 -31.96731 -31.48550 -29.36854 -29.01993 -28.04352 -25.97018 -23.53944 -22.77377 -21.45044 -20.92902 -20.14966 -19.77933 -17.26005 -16.77743 -16.10284 -15.28358 -15.00082 -14.88441 -14.23195 -14.09815 -13.79135 -13.39640 -13.16507 -13.04652 -12.77635 -12.44774 -12.21602 -11.90258 -11.71791 -11.59744 -11.46893 -11.40341 -11.04864 -10.93573 -10.92916 -10.71859 -10.60641 -10.40713 -10.33163 -9.60856 -9.37077 -9.29597 -9.09815 -7.93142 -7.39985 -7.26302 -6.73404 -4.31758 2.78788 3.07597 3.10439 3.12162 3.22033 3.90967 3.95001 4.46066 4.60937 4.78955 4.88382 4.96707 5.15332 5.28184 5.36378 5.39311 5.61250 5.72279 5.75130 5.78168 5.79166 5.88568 5.90392 5.99910 6.04315 6.08598 6.29699 6.33291 6.40765 6.48351 6.52051 6.99606 7.10266 7.13658 7.33904 7.40347 7.50453 7.65374 7.81992 7.95429 8.09241 8.19539 8.34147 8.68246 8.93077 9.01906 10.21150 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024778 B = 0.003768 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.754362 B = 7428.861742 C = 7915.391853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.082 3.918 3 H 0.082 0.918 4 N -0.672 5.672 5 C 0.124 3.876 6 C -0.211 4.211 7 C -0.085 4.085 8 C -0.227 4.227 9 C 0.113 3.887 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.077 3.923 13 N -0.794 5.794 14 Si 0.907 3.093 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.168 4.168 19 C -0.079 4.079 20 C 0.093 3.907 21 H 0.062 0.938 22 C -0.145 4.145 23 C -0.156 4.156 24 C 0.055 3.945 25 O -0.376 6.376 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.345 0.655 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.280 0.720 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 1.204 -14.409 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.029 4.029 3 H 0.100 0.900 4 N -0.303 5.303 5 C -0.004 4.004 6 C -0.213 4.213 7 C -0.104 4.104 8 C -0.247 4.247 9 C 0.110 3.890 10 C -0.495 4.495 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.419 5.419 14 Si 0.731 3.269 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.187 4.187 19 C -0.098 4.098 20 C 0.035 3.965 21 H 0.080 0.920 22 C -0.183 4.183 23 C -0.194 4.194 24 C -0.021 4.021 25 O -0.295 6.295 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.165 0.835 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.717 1.388 -14.439 14.758 hybrid contribution -0.306 -0.312 0.673 0.803 sum -3.023 1.075 -13.766 14.135 Atomic orbital electron populations 1.22402 0.97238 1.02603 1.01362 1.21665 0.92929 0.97216 0.91071 0.89978 1.60666 1.56799 1.09723 1.03124 1.20591 0.97498 0.93770 0.88547 1.18894 0.93745 1.09951 0.98663 1.20358 0.96316 0.98237 0.95463 1.20925 0.95303 1.08041 1.00439 1.17610 0.90598 0.89396 0.91383 1.19565 1.02497 1.16637 1.10751 0.90590 1.25891 0.96916 0.94718 0.96526 1.69823 1.16309 1.18572 1.37199 0.86398 0.78696 0.81367 0.80424 1.18831 1.20363 1.19058 1.21311 0.99767 1.02978 0.94667 1.20477 0.93698 0.98972 0.96668 1.22993 0.93243 0.84017 0.96285 0.92027 1.23278 0.95411 0.97200 1.02414 1.23110 0.98832 0.97507 0.99962 1.23015 0.87905 0.93272 0.97945 1.88373 1.38475 1.17538 1.85148 0.92868 0.92810 0.91703 0.83545 0.92169 0.96401 0.89969 0.89239 0.90888 0.86582 0.89578 0.91072 0.87624 0.90277 0.91445 0.91391 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 9.00 37.16 0.33 -1.81 16 2 C 0.08 1.05 2.56 -67.71 -0.17 0.88 16 3 H 0.08 1.00 7.80 -51.93 -0.40 0.60 16 4 N -0.67 -10.50 4.98 -107.99 -0.54 -11.04 16 5 C 0.12 2.14 5.60 -4.97 -0.03 2.12 16 6 C -0.21 -4.54 5.41 -104.33 -0.56 -5.10 16 7 C -0.08 -1.90 9.67 -39.66 -0.38 -2.29 16 8 C -0.23 -5.65 9.80 -38.87 -0.38 -6.03 16 9 C 0.11 3.03 5.58 -106.82 -0.60 2.44 16 10 C -0.46 -12.49 9.05 -37.74 -0.34 -12.83 16 11 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 12 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 13 N -0.79 -20.65 10.95 55.55 0.61 -20.05 16 14 Si 0.91 18.80 29.60 -169.99 -5.03 13.77 16 15 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 C -0.17 -4.39 8.70 -38.87 -0.34 -4.73 16 19 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 20 C 0.09 1.13 3.30 -25.70 -0.08 1.04 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 C -0.15 -1.71 6.51 -24.42 -0.16 -1.87 16 23 C -0.16 -1.61 7.02 -24.73 -0.17 -1.78 16 24 C 0.06 0.64 7.80 37.88 0.30 0.93 16 25 O -0.38 -5.15 10.26 -35.23 -0.36 -5.52 16 26 H 0.05 0.65 7.45 -51.93 -0.39 0.26 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.85 7.65 -51.93 -0.40 0.45 16 29 H 0.35 5.80 8.46 -39.30 -0.33 5.47 16 30 H 0.06 1.02 7.99 -51.93 -0.42 0.60 16 31 H 0.02 0.30 7.37 -51.93 -0.38 -0.08 16 32 H 0.08 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 35 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 1.52 7.07 -51.93 -0.37 1.15 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -27.10 339.24 -10.06 -37.16 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -6.79 Total: 9.97 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: -3.07 Total: -29.40 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.07 Total: -31.08 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.36 Total: -5.52 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.10 -10.06 -37.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348195732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.780 kcal (2) G-P(sol) polarization free energy of solvation -27.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds