Wall clock time and date at job start Thu Apr 9 2020 13:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47137 * 2 1 4 4 N 1.46895 * 109.46936 * 120.00616 * 2 1 3 5 5 C 1.46906 * 110.99937 * 274.99658 * 4 2 1 6 6 C 1.50696 * 109.47106 * 180.02562 * 5 4 2 7 7 C 1.38633 * 119.75075 * 269.72634 * 6 5 4 8 8 C 1.37616 * 120.25012 * 179.72401 * 7 6 5 9 9 C 1.40713 * 119.74447 * 0.56875 * 8 7 6 10 10 C 1.41396 * 120.24798 * 179.68124 * 9 8 7 11 11 H 1.07999 * 119.99714 * 24.41554 * 10 9 8 12 12 C 1.39944 * 120.00044 * 204.41319 * 10 9 8 13 13 N 1.30821 * 120.00280 * 17.86238 * 12 10 9 14 14 Si 1.86805 * 119.99925 * 197.85364 * 12 10 9 15 15 H 1.48501 * 109.47025 * 60.00325 * 14 12 10 16 16 H 1.48497 * 109.47228 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47204 * 300.00671 * 14 12 10 18 18 C 1.40720 * 119.51095 * 359.70692 * 9 8 7 19 19 C 1.37621 * 119.74454 * 359.97438 * 18 9 8 20 20 C 1.53001 * 109.46829 * 240.00569 * 2 1 3 21 21 H 1.09001 * 110.27586 * 64.29866 * 20 2 1 22 22 C 1.54951 * 110.30556 * 186.39100 * 20 2 1 23 23 C 1.55413 * 100.89100 * 155.28753 * 22 20 2 24 24 C 1.54384 * 102.31022 * 325.98493 * 23 22 20 25 25 O 1.43244 * 107.58550 * 21.29252 * 24 23 22 26 26 H 1.09000 * 109.47035 * 299.99675 * 1 2 3 27 27 H 1.09001 * 109.47228 * 59.99610 * 1 2 3 28 28 H 1.09003 * 109.47084 * 179.97438 * 1 2 3 29 29 H 1.00893 * 111.00682 * 38.95586 * 4 2 1 30 30 H 1.09005 * 109.46906 * 300.00306 * 5 4 2 31 31 H 1.08997 * 109.47065 * 60.00512 * 5 4 2 32 32 H 1.08004 * 119.87575 * 359.97438 * 7 6 5 33 33 H 1.07998 * 120.12913 * 180.28284 * 8 7 6 34 34 H 0.97001 * 119.99895 * 180.02562 * 13 12 10 35 35 H 1.08007 * 120.12747 * 179.97438 * 18 9 8 36 36 H 1.07993 * 119.87196 * 179.97438 * 19 18 9 37 37 H 1.09003 * 111.12118 * 273.27364 * 22 20 2 38 38 H 1.08995 * 111.12709 * 37.44235 * 22 20 2 39 39 H 1.09001 * 110.88235 * 207.75006 * 23 22 20 40 40 H 1.08999 * 110.76523 * 84.17020 * 23 22 20 41 41 H 1.08993 * 109.83810 * 261.77317 * 24 23 22 42 42 H 1.09008 * 109.90087 * 140.84152 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 2.0825 0.2224 2.3469 6 6 2.5885 -0.5218 3.5556 7 6 1.6888 -1.1478 4.4045 8 6 2.1399 -1.8350 5.5081 9 6 3.5194 -1.8907 5.7800 10 6 3.9942 -2.5881 6.9147 11 1 3.4041 -3.3835 7.3456 12 6 5.2286 -2.2479 7.4793 13 7 5.7786 -1.0936 7.2026 14 14 6.0910 -3.4418 8.6284 15 1 6.3635 -4.7119 7.9088 16 1 7.3721 -2.8483 9.0884 17 1 5.2226 -3.7143 9.8018 18 6 4.4231 -1.2467 4.9146 19 6 3.9498 -0.5708 3.8132 20 6 2.0400 -0.7211 -1.2493 21 1 1.7478 -0.1751 -2.1464 22 6 3.5808 -0.8741 -1.1907 23 6 3.7884 -2.1101 -2.1096 24 6 2.5224 -2.9471 -1.8264 25 8 1.5292 -2.0630 -1.2938 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.4496 -1.4980 1.4099 30 1 2.7589 1.0460 2.1182 31 1 1.0871 0.6161 2.5526 32 1 0.6300 -1.0993 4.1967 33 1 1.4376 -2.3258 6.1656 34 1 6.6345 -0.8580 7.5937 35 1 5.4839 -1.2828 5.1140 36 1 4.6414 -0.0755 3.1479 37 1 4.0786 0.0068 -1.5962 38 1 3.9167 -1.0801 -0.1745 39 1 4.6871 -2.6582 -1.8265 40 1 3.8292 -1.8106 -3.1568 41 1 2.7499 -3.7278 -1.1006 42 1 2.1600 -3.3963 -2.7511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348195732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:31 Heat of formation + Delta-G solvation = -55.298862 kcal Electronic energy + Delta-G solvation = -21037.453115 eV Core-core repulsion = 17980.581408 eV Total energy + Delta-G solvation = -3056.871707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51102 -39.49551 -37.32021 -35.53960 -33.00894 -32.85277 -31.18803 -30.65270 -29.00756 -27.64836 -24.92812 -24.00399 -22.82266 -22.33189 -21.65624 -21.07340 -19.19875 -17.74874 -17.24995 -17.04523 -16.28844 -15.97485 -15.74245 -15.54729 -15.23108 -14.90252 -14.47531 -14.09566 -13.98598 -13.86990 -13.77156 -13.41232 -13.26086 -13.07626 -12.70795 -12.63504 -12.55407 -12.27927 -12.22103 -12.07330 -11.87847 -11.63474 -11.51703 -11.35269 -11.19680 -10.98641 -10.31613 -9.31847 -9.28341 -9.04146 -8.62088 -6.31341 0.98306 1.17925 1.37732 1.48798 1.54037 2.21421 2.71716 3.00575 3.41621 3.71260 3.83578 3.97152 4.12629 4.22140 4.28067 4.34082 4.42352 4.45357 4.50282 4.60531 4.67492 4.70216 4.84686 4.90523 4.94344 4.98131 5.04565 5.09024 5.09447 5.16742 5.18055 5.35068 5.41740 5.49624 5.54967 5.73876 5.97865 6.12417 6.17769 6.27644 6.36932 6.42272 6.57986 6.73696 6.96635 7.07152 8.34858 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024778 B = 0.003768 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.754362 B = 7428.861742 C = 7915.391853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.081 3.919 3 H 0.094 0.906 4 N -0.676 5.676 5 C 0.132 3.868 6 C -0.197 4.197 7 C -0.086 4.086 8 C -0.245 4.245 9 C 0.079 3.921 10 C -0.506 4.506 11 H 0.072 0.928 12 C 0.037 3.963 13 N -0.826 5.826 14 Si 0.980 3.020 15 H -0.262 1.262 16 H -0.266 1.266 17 H -0.260 1.260 18 C -0.192 4.192 19 C -0.084 4.084 20 C 0.091 3.909 21 H 0.082 0.918 22 C -0.146 4.146 23 C -0.150 4.150 24 C 0.049 3.951 25 O -0.397 6.397 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.338 0.662 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.288 0.712 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.750 1.762 -16.084 16.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.029 4.029 3 H 0.112 0.888 4 N -0.307 5.307 5 C 0.004 3.996 6 C -0.198 4.198 7 C -0.105 4.105 8 C -0.265 4.265 9 C 0.077 3.923 10 C -0.536 4.536 11 H 0.090 0.910 12 C -0.178 4.178 13 N -0.452 5.452 14 Si 0.801 3.199 15 H -0.186 1.186 16 H -0.190 1.190 17 H -0.184 1.184 18 C -0.211 4.211 19 C -0.103 4.103 20 C 0.034 3.966 21 H 0.100 0.900 22 C -0.184 4.184 23 C -0.188 4.188 24 C -0.028 4.028 25 O -0.317 6.317 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.156 0.844 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.129 0.871 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.093 1.957 -16.133 16.543 hybrid contribution -0.287 -0.418 1.050 1.166 sum -3.380 1.539 -15.083 15.534 Atomic orbital electron populations 1.22321 0.96480 1.01980 1.02164 1.21774 0.93525 0.97574 0.89986 0.88806 1.60577 1.57350 1.09393 1.03333 1.20479 0.98125 0.93549 0.87412 1.19347 0.92854 1.08122 0.99489 1.20679 0.98037 0.97233 0.94556 1.21134 0.94770 1.08886 1.01663 1.17949 0.91752 0.90471 0.92117 1.19812 1.04240 1.17636 1.11893 0.90960 1.26725 0.96955 0.96177 0.97948 1.69875 1.16893 1.20026 1.38402 0.85285 0.77754 0.78703 0.78147 1.18609 1.19028 1.18408 1.21277 0.98960 1.04772 0.96106 1.20715 0.95104 0.98457 0.96014 1.23093 0.93312 0.83660 0.96558 0.89987 1.23222 0.95374 0.98557 1.01205 1.23101 0.98229 0.96595 1.00834 1.23135 0.88330 0.93032 0.98258 1.88349 1.39439 1.18400 1.85541 0.93058 0.91004 0.93002 0.84383 0.91225 0.95129 0.87095 0.88936 0.90191 0.88417 0.87920 0.89405 0.90534 0.90111 0.89359 0.92644 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.68 9.00 71.98 0.65 -3.04 16 2 C 0.08 1.89 2.56 44.92 0.11 2.00 16 3 H 0.09 1.98 7.80 -2.39 -0.02 1.96 16 4 N -0.68 -19.92 4.98 -495.57 -2.47 -22.39 16 5 C 0.13 4.29 5.60 85.55 0.48 4.77 16 6 C -0.20 -8.27 5.41 -19.68 -0.11 -8.38 16 7 C -0.09 -3.81 9.67 22.22 0.21 -3.60 16 8 C -0.24 -12.42 9.80 22.73 0.22 -12.19 16 9 C 0.08 4.43 5.58 -21.29 -0.12 4.32 16 10 C -0.51 -28.29 9.05 23.46 0.21 -28.08 16 11 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 12 C 0.04 1.90 5.14 85.26 0.44 2.34 16 13 N -0.83 -44.25 10.95 21.83 0.24 -44.02 16 14 Si 0.98 39.15 29.60 68.60 2.03 41.18 16 15 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 16 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 17 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 18 C -0.19 -10.37 8.70 22.73 0.20 -10.18 16 19 C -0.08 -3.95 9.67 22.22 0.21 -3.73 16 20 C 0.09 1.99 3.30 31.26 0.10 2.10 16 21 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 22 C -0.15 -3.13 6.51 32.09 0.21 -2.92 16 23 C -0.15 -2.76 7.02 31.89 0.22 -2.54 16 24 C 0.05 1.05 7.80 72.45 0.56 1.61 16 25 O -0.40 -10.21 10.26 -148.98 -1.53 -11.74 16 26 H 0.05 1.12 7.45 -2.39 -0.02 1.10 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.26 7.65 -2.39 -0.02 1.24 16 29 H 0.34 10.90 8.46 -89.70 -0.76 10.14 16 30 H 0.07 2.16 7.99 -2.38 -0.02 2.14 16 31 H 0.03 0.93 7.37 -2.39 -0.02 0.91 16 32 H 0.11 4.21 8.06 -2.91 -0.02 4.18 16 33 H 0.09 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 35 H 0.10 5.55 6.16 -2.91 -0.02 5.54 16 36 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 2.12 7.07 -2.39 -0.02 2.10 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -59.98 339.24 2.13 -57.85 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: 0.24 Total: 36.62 kcal Atomic # 6 Polarization: -61.13 SS G_CDS: 3.62 Total: -57.51 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -2.23 Total: -66.41 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -1.53 Total: -11.74 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -59.98 2.13 -57.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348195732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.555 kcal (2) G-P(sol) polarization free energy of solvation -59.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds