Wall clock time and date at job start Thu Apr 9 2020 13:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46678 * 2 1 4 4 N 1.46900 * 109.47203 * 239.99936 * 2 1 3 5 5 C 1.46902 * 110.99875 * 85.00060 * 4 2 1 6 6 C 1.50699 * 109.47002 * 180.02562 * 5 4 2 7 7 C 1.38627 * 119.75123 * 89.99781 * 6 5 4 8 8 C 1.37617 * 120.24981 * 179.69930 * 7 6 5 9 9 C 1.40718 * 119.74355 * 0.28290 * 8 7 6 10 10 C 1.41402 * 120.24523 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99833 * 204.38492 * 10 9 8 12 12 C 1.39950 * 119.99673 * 24.38625 * 10 9 8 13 13 N 1.30819 * 120.00082 * 17.85869 * 12 10 9 14 14 Si 1.86800 * 119.99528 * 197.85991 * 12 10 9 15 15 H 1.48491 * 109.47313 * 89.99856 * 14 12 10 16 16 H 1.48501 * 109.46879 * 209.99817 * 14 12 10 17 17 H 1.48499 * 109.47205 * 329.99640 * 14 12 10 18 18 C 1.40718 * 119.51138 * 359.97438 * 9 8 7 19 19 C 1.37614 * 119.74432 * 0.02562 * 18 9 8 20 20 C 1.52997 * 109.46853 * 119.99951 * 2 1 3 21 21 H 1.08999 * 109.86992 * 173.99792 * 20 2 1 22 22 C 1.54101 * 109.87989 * 294.99859 * 20 2 1 23 23 C 1.54818 * 104.18901 * 121.45480 * 22 20 2 24 24 C 1.54998 * 102.08633 * 20.88219 * 23 22 20 25 25 O 1.43740 * 109.87895 * 52.83214 * 20 2 1 26 26 H 1.09000 * 109.46668 * 60.00166 * 1 2 3 27 27 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46884 * 300.00116 * 1 2 3 29 29 H 1.00895 * 110.99851 * 208.95270 * 4 2 1 30 30 H 1.09003 * 109.46762 * 59.99707 * 5 4 2 31 31 H 1.08998 * 109.47276 * 300.00002 * 5 4 2 32 32 H 1.08001 * 119.87708 * 359.97438 * 7 6 5 33 33 H 1.08000 * 120.13392 * 180.29978 * 8 7 6 34 34 H 0.97001 * 119.99459 * 180.02562 * 13 12 10 35 35 H 1.08003 * 120.12464 * 179.97438 * 18 9 8 36 36 H 1.08007 * 119.87423 * 180.02562 * 19 18 9 37 37 H 1.09001 * 110.49186 * 240.13041 * 22 20 2 38 38 H 1.09000 * 110.49013 * 2.64865 * 22 20 2 39 39 H 1.08997 * 110.90787 * 139.07569 * 23 22 20 40 40 H 1.09000 * 110.90858 * 262.65479 * 23 22 20 41 41 H 1.09000 * 110.62288 * 81.47976 * 24 23 22 42 42 H 1.09003 * 110.61402 * 204.31711 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 6 1.6873 -1.1519 -4.4013 8 6 2.1366 -1.8294 -5.5117 9 6 3.5160 -1.8859 -5.7843 10 6 3.9893 -2.5786 -6.9225 11 1 4.9983 -2.9632 -6.9397 12 6 3.1501 -2.7657 -8.0268 13 7 2.0797 -2.0269 -8.1675 14 14 3.5585 -4.0706 -9.2996 15 1 2.9231 -5.3557 -8.9125 16 1 3.0460 -3.6449 -10.6268 17 1 5.0311 -4.2483 -9.3714 18 6 4.4209 -1.2472 -4.9163 19 6 3.9490 -0.5755 -3.8118 20 6 2.0400 -0.7212 1.2492 21 1 3.1246 -0.8188 1.2039 22 6 1.6372 0.0671 2.5106 23 6 0.7956 -0.9382 3.3338 24 6 1.2540 -2.2992 2.7508 25 8 1.4329 -2.0206 1.3455 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.9173 -1.1205 -1.0287 30 1 2.7589 1.0462 -2.1181 31 1 1.0872 0.6163 -2.5525 32 1 0.6291 -1.1073 -4.1900 33 1 1.4334 -2.3155 -6.1716 34 1 1.4979 -2.1569 -8.9327 35 1 5.4816 -1.2846 -5.1158 36 1 4.6416 -0.0841 -3.1444 37 1 2.5224 0.3711 3.0694 38 1 1.0393 0.9379 2.2416 39 1 1.0353 -0.8690 4.3949 40 1 -0.2701 -0.7820 3.1666 41 1 2.1949 -2.6131 3.2027 42 1 0.4862 -3.0585 2.8993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348195733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:33 Heat of formation + Delta-G solvation = -38.143366 kcal Electronic energy + Delta-G solvation = -20766.440891 eV Core-core repulsion = 17710.313102 eV Total energy + Delta-G solvation = -3056.127789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.79125 -37.71568 -35.93351 -33.71532 -32.30664 -31.36462 -29.38645 -29.04535 -27.94122 -26.15462 -23.86837 -22.71643 -21.51993 -20.88771 -20.12698 -19.72851 -17.23651 -16.70376 -16.27218 -15.57758 -15.24691 -14.80344 -14.44986 -14.08165 -13.82543 -13.76186 -13.29316 -13.11365 -12.52898 -12.08739 -12.00496 -11.88266 -11.85546 -11.72431 -11.46194 -11.40640 -11.28860 -11.09027 -10.93351 -10.83210 -10.63726 -10.36026 -10.26319 -9.64919 -9.51824 -9.29973 -9.08191 -7.93187 -7.37046 -7.24162 -6.70893 -4.29321 2.79793 3.10247 3.13901 3.14827 3.23155 3.77404 3.97271 4.37975 4.42360 4.63830 4.74209 4.85278 4.93820 5.09703 5.20406 5.40589 5.47488 5.53000 5.57533 5.65903 5.77574 5.81643 5.85848 5.89234 5.99739 6.06545 6.11573 6.32199 6.42427 6.52181 6.58156 6.88604 7.02421 7.12822 7.36593 7.42827 7.53542 7.68154 7.82289 7.97159 8.12148 8.22548 8.36592 8.71183 8.95591 9.04579 10.23715 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035957 B = 0.003151 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.511545 B = 8884.879027 C = 8989.279723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.084 3.916 3 H 0.046 0.954 4 N -0.673 5.673 5 C 0.124 3.876 6 C -0.211 4.211 7 C -0.078 4.078 8 C -0.167 4.167 9 C 0.112 3.888 10 C -0.464 4.464 11 H 0.076 0.924 12 C 0.076 3.924 13 N -0.793 5.793 14 Si 0.907 3.093 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.263 1.263 18 C -0.227 4.227 19 C -0.086 4.086 20 C 0.077 3.923 21 H 0.064 0.936 22 C -0.152 4.152 23 C -0.153 4.153 24 C 0.042 3.958 25 O -0.351 6.351 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.340 0.660 30 H 0.016 0.984 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.280 0.720 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 3.265 17.661 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 H 0.064 0.936 4 N -0.305 5.305 5 C -0.003 4.003 6 C -0.212 4.212 7 C -0.097 4.097 8 C -0.186 4.186 9 C 0.109 3.891 10 C -0.494 4.494 11 H 0.095 0.905 12 C -0.142 4.142 13 N -0.419 5.419 14 Si 0.732 3.268 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.247 4.247 19 C -0.105 4.105 20 C 0.018 3.982 21 H 0.082 0.918 22 C -0.190 4.190 23 C -0.191 4.191 24 C -0.035 4.035 25 O -0.269 6.269 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.159 0.841 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.135 0.865 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.522 2.947 17.137 17.741 hybrid contribution 1.026 0.175 -0.217 1.063 sum -2.496 3.121 16.920 17.385 Atomic orbital electron populations 1.21697 0.94377 1.02918 1.00207 1.21711 0.96871 0.94824 0.89184 0.93648 1.60599 1.33682 1.33150 1.03028 1.20620 0.98856 0.91896 0.88952 1.18900 0.93198 1.10179 0.98940 1.20493 0.96804 0.97608 0.94767 1.21316 0.96308 1.03661 0.97340 1.17624 0.91669 0.88519 0.91240 1.19596 0.99597 1.31578 0.98601 0.90544 1.25903 0.94159 0.95149 0.98941 1.69833 1.12030 1.32176 1.27851 0.86331 0.79954 0.81367 0.79155 1.19275 1.20383 1.18684 1.20920 0.97828 1.06356 0.99604 1.20343 0.93849 0.99415 0.96887 1.22924 0.96586 0.83895 0.94750 0.91830 1.23015 1.00471 0.99450 0.96054 1.23117 1.00864 0.95307 0.99831 1.23535 1.00271 0.96968 0.82704 1.89048 1.81883 1.33372 1.22638 0.92935 0.91151 0.93474 0.84140 0.96617 0.92002 0.89497 0.86537 0.90947 0.89229 0.90020 0.90901 0.90121 0.90585 0.90495 0.92579 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.00 37.16 0.33 -1.41 16 2 C 0.08 1.13 2.35 -67.71 -0.16 0.97 16 3 H 0.05 0.58 7.80 -51.93 -0.40 0.17 16 4 N -0.67 -11.28 6.28 -107.99 -0.68 -11.95 16 5 C 0.12 2.27 5.60 -4.98 -0.03 2.24 16 6 C -0.21 -4.69 5.41 -104.33 -0.56 -5.26 16 7 C -0.08 -1.89 9.67 -39.66 -0.38 -2.27 16 8 C -0.17 -4.47 8.70 -38.87 -0.34 -4.81 16 9 C 0.11 3.06 5.58 -106.82 -0.60 2.47 16 10 C -0.46 -12.62 9.05 -37.74 -0.34 -12.96 16 11 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 12 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 13 N -0.79 -20.95 10.95 55.55 0.61 -20.35 16 14 Si 0.91 19.07 29.60 -169.99 -5.03 14.04 16 15 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 18 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 19 C -0.09 -1.96 9.67 -39.66 -0.38 -2.34 16 20 C 0.08 0.91 3.08 -26.16 -0.08 0.83 16 21 H 0.06 0.75 8.01 -51.93 -0.42 0.33 16 22 C -0.15 -1.33 6.16 -25.20 -0.16 -1.49 16 23 C -0.15 -1.22 7.15 -24.72 -0.18 -1.40 16 24 C 0.04 0.41 7.72 38.21 0.29 0.70 16 25 O -0.35 -4.78 10.23 -35.23 -0.36 -5.14 16 26 H 0.05 0.71 7.45 -51.93 -0.39 0.32 16 27 H 0.07 1.04 7.53 -51.93 -0.39 0.64 16 28 H 0.05 0.50 6.74 -51.93 -0.35 0.15 16 29 H 0.34 5.77 8.27 -39.29 -0.32 5.45 16 30 H 0.02 0.27 8.00 -51.93 -0.42 -0.14 16 31 H 0.06 1.11 7.37 -51.93 -0.38 0.73 16 32 H 0.09 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 34 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 35 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 36 H 0.08 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.68 6.60 -51.93 -0.34 0.34 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -28.63 337.47 -10.09 -38.72 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.67 Total: 8.57 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -3.05 Total: -28.97 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: -0.07 Total: -32.30 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.36 Total: -5.14 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.63 -10.09 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348195733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.575 kcal (2) G-P(sol) polarization free energy of solvation -28.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds