Wall clock time and date at job start Thu Apr 9 2020 13:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46678 * 2 1 4 4 N 1.46900 * 109.47203 * 239.99936 * 2 1 3 5 5 C 1.46902 * 110.99875 * 85.00060 * 4 2 1 6 6 C 1.50699 * 109.47002 * 180.02562 * 5 4 2 7 7 C 1.38627 * 119.75123 * 89.99781 * 6 5 4 8 8 C 1.37617 * 120.24981 * 179.69930 * 7 6 5 9 9 C 1.40718 * 119.74355 * 0.28290 * 8 7 6 10 10 C 1.41402 * 120.24523 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99833 * 204.38492 * 10 9 8 12 12 C 1.39950 * 119.99673 * 24.38625 * 10 9 8 13 13 N 1.30819 * 120.00082 * 17.85869 * 12 10 9 14 14 Si 1.86800 * 119.99528 * 197.85991 * 12 10 9 15 15 H 1.48491 * 109.47313 * 89.99856 * 14 12 10 16 16 H 1.48501 * 109.46879 * 209.99817 * 14 12 10 17 17 H 1.48499 * 109.47205 * 329.99640 * 14 12 10 18 18 C 1.40718 * 119.51138 * 359.97438 * 9 8 7 19 19 C 1.37614 * 119.74432 * 0.02562 * 18 9 8 20 20 C 1.52997 * 109.46853 * 119.99951 * 2 1 3 21 21 H 1.08999 * 109.86992 * 173.99792 * 20 2 1 22 22 C 1.54101 * 109.87989 * 294.99859 * 20 2 1 23 23 C 1.54818 * 104.18901 * 121.45480 * 22 20 2 24 24 C 1.54998 * 102.08633 * 20.88219 * 23 22 20 25 25 O 1.43740 * 109.87895 * 52.83214 * 20 2 1 26 26 H 1.09000 * 109.46668 * 60.00166 * 1 2 3 27 27 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46884 * 300.00116 * 1 2 3 29 29 H 1.00895 * 110.99851 * 208.95270 * 4 2 1 30 30 H 1.09003 * 109.46762 * 59.99707 * 5 4 2 31 31 H 1.08998 * 109.47276 * 300.00002 * 5 4 2 32 32 H 1.08001 * 119.87708 * 359.97438 * 7 6 5 33 33 H 1.08000 * 120.13392 * 180.29978 * 8 7 6 34 34 H 0.97001 * 119.99459 * 180.02562 * 13 12 10 35 35 H 1.08003 * 120.12464 * 179.97438 * 18 9 8 36 36 H 1.08007 * 119.87423 * 180.02562 * 19 18 9 37 37 H 1.09001 * 110.49186 * 240.13041 * 22 20 2 38 38 H 1.09000 * 110.49013 * 2.64865 * 22 20 2 39 39 H 1.08997 * 110.90787 * 139.07569 * 23 22 20 40 40 H 1.09000 * 110.90858 * 262.65479 * 23 22 20 41 41 H 1.09000 * 110.62288 * 81.47976 * 24 23 22 42 42 H 1.09003 * 110.61402 * 204.31711 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5874 -0.5218 -3.5560 7 6 1.6873 -1.1519 -4.4013 8 6 2.1366 -1.8294 -5.5117 9 6 3.5160 -1.8859 -5.7843 10 6 3.9893 -2.5786 -6.9225 11 1 4.9983 -2.9632 -6.9397 12 6 3.1501 -2.7657 -8.0268 13 7 2.0797 -2.0269 -8.1675 14 14 3.5585 -4.0706 -9.2996 15 1 2.9231 -5.3557 -8.9125 16 1 3.0460 -3.6449 -10.6268 17 1 5.0311 -4.2483 -9.3714 18 6 4.4209 -1.2472 -4.9163 19 6 3.9490 -0.5755 -3.8118 20 6 2.0400 -0.7212 1.2492 21 1 3.1246 -0.8188 1.2039 22 6 1.6372 0.0671 2.5106 23 6 0.7956 -0.9382 3.3338 24 6 1.2540 -2.2992 2.7508 25 8 1.4329 -2.0206 1.3455 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.9173 -1.1205 -1.0287 30 1 2.7589 1.0462 -2.1181 31 1 1.0872 0.6163 -2.5525 32 1 0.6291 -1.1073 -4.1900 33 1 1.4334 -2.3155 -6.1716 34 1 1.4979 -2.1569 -8.9327 35 1 5.4816 -1.2846 -5.1158 36 1 4.6416 -0.0841 -3.1444 37 1 2.5224 0.3711 3.0694 38 1 1.0393 0.9379 2.2416 39 1 1.0353 -0.8690 4.3949 40 1 -0.2701 -0.7820 3.1666 41 1 2.1949 -2.6131 3.2027 42 1 0.4862 -3.0585 2.8993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348195733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:32 Heat of formation + Delta-G solvation = -54.711003 kcal Electronic energy + Delta-G solvation = -20767.159318 eV Core-core repulsion = 17710.313102 eV Total energy + Delta-G solvation = -3056.846216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66879 -39.52529 -37.26712 -35.52966 -33.30363 -32.64144 -31.21319 -30.69780 -28.86299 -27.83748 -25.25158 -23.88933 -22.84224 -22.33646 -21.58014 -21.05008 -19.20796 -17.68078 -17.19440 -17.13440 -16.47307 -16.01882 -15.78317 -15.61198 -15.54141 -14.97945 -14.52417 -14.39527 -14.05962 -13.79636 -13.51316 -13.32576 -12.99057 -12.90725 -12.81479 -12.68974 -12.48797 -12.33406 -12.25872 -12.03704 -11.96011 -11.77981 -11.43550 -11.33683 -11.20366 -11.00070 -10.52351 -9.33142 -9.30455 -9.09806 -8.62633 -6.32051 0.96298 1.16913 1.37488 1.50999 1.52074 2.21135 2.70021 2.97182 3.42323 3.65468 3.80696 3.88654 4.02480 4.14115 4.18059 4.34062 4.36941 4.46254 4.52192 4.58185 4.65421 4.69433 4.77568 4.86767 4.91285 4.97268 4.98417 5.05903 5.09122 5.16781 5.18103 5.24762 5.39848 5.48473 5.49996 5.72939 5.95912 6.05744 6.12130 6.24136 6.35454 6.40764 6.57695 6.72869 6.95733 7.06244 8.34575 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035957 B = 0.003151 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.511545 B = 8884.879027 C = 8989.279723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.083 3.917 3 H 0.061 0.939 4 N -0.687 5.687 5 C 0.133 3.867 6 C -0.199 4.199 7 C -0.087 4.087 8 C -0.192 4.192 9 C 0.079 3.921 10 C -0.503 4.503 11 H 0.074 0.926 12 C 0.034 3.966 13 N -0.827 5.827 14 Si 0.983 3.017 15 H -0.263 1.263 16 H -0.267 1.267 17 H -0.258 1.258 18 C -0.243 4.243 19 C -0.085 4.085 20 C 0.074 3.926 21 H 0.062 0.938 22 C -0.146 4.146 23 C -0.146 4.146 24 C 0.033 3.967 25 O -0.387 6.387 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.338 0.662 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.287 0.713 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.479 4.057 19.587 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.026 4.026 3 H 0.079 0.921 4 N -0.319 5.319 5 C 0.005 3.995 6 C -0.201 4.201 7 C -0.106 4.106 8 C -0.211 4.211 9 C 0.076 3.924 10 C -0.533 4.533 11 H 0.092 0.908 12 C -0.181 4.181 13 N -0.453 5.453 14 Si 0.804 3.196 15 H -0.188 1.188 16 H -0.191 1.191 17 H -0.182 1.182 18 C -0.263 4.263 19 C -0.103 4.103 20 C 0.016 3.984 21 H 0.080 0.920 22 C -0.184 4.184 23 C -0.184 4.184 24 C -0.043 4.043 25 O -0.306 6.306 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.156 0.844 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.354 3.752 19.089 19.741 hybrid contribution 0.939 -0.008 -0.660 1.148 sum -2.415 3.744 18.429 18.960 Atomic orbital electron populations 1.21650 0.94217 1.01728 1.01077 1.21821 0.96885 0.95457 0.88461 0.92145 1.60498 1.33683 1.33575 1.04111 1.20495 0.99185 0.91928 0.87875 1.19353 0.92859 1.08338 0.99519 1.20711 0.97882 0.97494 0.94467 1.21265 0.96113 1.05313 0.98420 1.17972 0.92357 0.89708 0.92330 1.19838 1.00198 1.33476 0.99769 0.90793 1.26777 0.93745 0.96837 1.00734 1.69888 1.13011 1.33458 1.28919 0.85196 0.79844 0.78088 0.76508 1.18814 1.19112 1.18152 1.21153 0.98033 1.06744 1.00322 1.20684 0.94731 0.98518 0.96400 1.22968 0.96329 0.83793 0.95319 0.92041 1.23009 1.01427 0.99283 0.94729 1.23102 1.00691 0.93699 1.00902 1.23746 1.01025 0.98319 0.81203 1.89011 1.82160 1.34346 1.25092 0.93792 0.93320 0.90862 0.84395 0.94735 0.91759 0.88454 0.88490 0.90212 0.88587 0.86623 0.89238 0.89417 0.88322 0.90493 0.91781 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.00 71.98 0.65 -2.48 16 2 C 0.08 2.04 2.35 44.92 0.11 2.15 16 3 H 0.06 1.33 7.80 -2.39 -0.02 1.31 16 4 N -0.69 -21.95 6.28 -495.57 -3.11 -25.06 16 5 C 0.13 4.58 5.60 85.56 0.48 5.06 16 6 C -0.20 -8.71 5.41 -19.68 -0.11 -8.81 16 7 C -0.09 -4.27 9.67 22.22 0.21 -4.06 16 8 C -0.19 -10.68 8.70 22.73 0.20 -10.48 16 9 C 0.08 4.45 5.58 -21.29 -0.12 4.34 16 10 C -0.50 -28.38 9.05 23.46 0.21 -28.17 16 11 H 0.07 4.03 7.91 -2.91 -0.02 4.00 16 12 C 0.03 1.76 5.14 85.26 0.44 2.20 16 13 N -0.83 -45.05 10.95 21.83 0.24 -44.81 16 14 Si 0.98 39.72 29.60 68.60 2.03 41.75 16 15 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 16 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 17 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 18 C -0.24 -12.38 9.80 22.73 0.22 -12.15 16 19 C -0.08 -3.77 9.67 22.22 0.21 -3.55 16 20 C 0.07 1.59 3.08 30.97 0.10 1.69 16 21 H 0.06 1.33 8.01 -2.39 -0.02 1.31 16 22 C -0.15 -2.09 6.16 31.59 0.19 -1.90 16 23 C -0.15 -1.88 7.15 31.90 0.23 -1.65 16 24 C 0.03 0.58 7.72 72.67 0.56 1.14 16 25 O -0.39 -10.09 10.23 -148.98 -1.52 -11.62 16 26 H 0.04 1.12 7.45 -2.39 -0.02 1.10 16 27 H 0.05 1.39 7.53 -2.39 -0.02 1.37 16 28 H 0.07 1.36 6.74 -2.39 -0.02 1.35 16 29 H 0.34 10.98 8.27 -89.70 -0.74 10.24 16 30 H 0.03 1.07 8.00 -2.39 -0.02 1.05 16 31 H 0.06 2.19 7.37 -2.39 -0.02 2.18 16 32 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 33 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 34 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 35 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 36 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.14 6.60 -2.39 -0.02 1.12 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -63.76 337.47 1.48 -62.28 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: 0.26 Total: 34.13 kcal Atomic # 6 Polarization: -60.25 SS G_CDS: 3.59 Total: -56.67 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -2.87 Total: -69.87 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -1.52 Total: -11.62 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -63.76 1.48 -62.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348195733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.565 kcal (2) G-P(sol) polarization free energy of solvation -63.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds