Wall clock time and date at job start Thu Apr 9 2020 13:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47205 * 2 1 4 4 N 1.46901 * 109.47144 * 240.00346 * 2 1 3 5 5 C 1.46897 * 111.00297 * 84.99772 * 4 2 1 6 6 C 1.50694 * 109.47438 * 180.02562 * 5 4 2 7 7 C 1.38631 * 119.74861 * 89.99798 * 6 5 4 8 8 C 1.37621 * 120.24953 * 179.97438 * 7 6 5 9 9 C 1.40722 * 119.74281 * 0.02562 * 8 7 6 10 10 C 1.41397 * 120.24551 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99675 * 335.21328 * 10 9 8 12 12 C 1.39941 * 120.00117 * 154.93122 * 10 9 8 13 13 N 1.30831 * 120.00117 * 342.49004 * 12 10 9 14 14 Si 1.86797 * 120.00094 * 162.49029 * 12 10 9 15 15 H 1.48500 * 109.47305 * 94.51868 * 14 12 10 16 16 H 1.48502 * 109.47201 * 214.52371 * 14 12 10 17 17 H 1.48507 * 109.46854 * 334.52024 * 14 12 10 18 18 C 1.40717 * 119.51112 * 0.26461 * 9 8 7 19 19 C 1.37618 * 119.74540 * 359.47538 * 18 9 8 20 20 C 1.52998 * 109.46979 * 120.00063 * 2 1 3 21 21 H 1.08998 * 110.33409 * 300.69908 * 20 2 1 22 22 C 1.54488 * 110.36951 * 178.44865 * 20 2 1 23 23 C 1.54514 * 104.06346 * 217.19034 * 22 20 2 24 24 C 1.54480 * 104.05956 * 0.02562 * 23 22 20 25 25 O 1.44423 * 110.37474 * 62.95334 * 20 2 1 26 26 H 1.08999 * 109.46853 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46588 * 299.99953 * 1 2 3 28 28 H 1.08997 * 109.47061 * 59.99580 * 1 2 3 29 29 H 1.00897 * 110.99509 * 321.04510 * 4 2 1 30 30 H 1.09008 * 109.46958 * 59.99913 * 5 4 2 31 31 H 1.09003 * 109.47154 * 300.00403 * 5 4 2 32 32 H 1.07993 * 119.87748 * 0.02847 * 7 6 5 33 33 H 1.08002 * 120.13117 * 179.97438 * 8 7 6 34 34 H 0.96999 * 119.99768 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.12568 * 179.70310 * 18 9 8 36 36 H 1.07997 * 119.88044 * 180.22646 * 19 18 9 37 37 H 1.08995 * 110.51205 * 335.83711 * 22 20 2 38 38 H 1.09001 * 110.50745 * 98.41175 * 22 20 2 39 39 H 1.08994 * 110.50830 * 118.64297 * 23 22 20 40 40 H 1.08998 * 110.50910 * 241.22098 * 23 22 20 41 41 H 1.08997 * 110.37067 * 142.80921 * 24 23 22 42 42 H 1.09001 * 110.37320 * 265.03041 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5873 -0.5217 -3.5560 7 6 1.6872 -1.1518 -4.4013 8 6 2.1368 -1.8339 -5.5087 9 6 3.5163 -1.8907 -5.7812 10 6 3.9900 -2.5891 -6.9157 11 1 3.4019 -3.3882 -7.3423 12 6 5.2180 -2.2409 -7.4893 13 7 5.7633 -1.0836 -7.2155 14 14 6.0789 -3.4286 -8.6460 15 1 5.7211 -3.0998 -10.0492 16 1 7.5489 -3.3133 -8.4698 17 1 5.6509 -4.8170 -8.3383 18 6 4.4212 -1.2526 -4.9128 19 6 3.9486 -0.5717 -3.8143 20 6 2.0400 -0.7213 1.2492 21 1 1.6743 -0.2257 2.1485 22 6 3.5842 -0.7674 1.2508 23 6 3.9178 -2.1542 1.8449 24 6 2.5357 -2.7821 2.1314 25 8 1.6272 -2.1052 1.2346 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.4496 -1.4978 -1.4100 30 1 2.7589 1.0463 -2.1182 31 1 1.0871 0.6164 -2.5525 32 1 0.6290 -1.1064 -4.1905 33 1 1.4339 -2.3245 -6.1658 34 1 6.6147 -0.8425 -7.6128 35 1 5.4822 -1.2940 -5.1098 36 1 4.6409 -0.0780 -3.1484 37 1 3.9698 -0.6844 0.2347 38 1 3.9893 0.0266 1.8781 39 1 4.4682 -2.7568 1.1225 40 1 4.4898 -2.0473 2.7665 41 1 2.5533 -3.8511 1.9194 42 1 2.2464 -2.6062 3.1675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348195734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:35 Heat of formation + Delta-G solvation = -40.558764 kcal Electronic energy + Delta-G solvation = -21027.243437 eV Core-core repulsion = 17971.010909 eV Total energy + Delta-G solvation = -3056.232529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.50609 -37.72619 -36.02754 -33.72940 -31.91245 -31.47187 -29.35108 -28.99918 -28.02041 -25.95328 -23.61676 -22.90034 -21.17173 -20.92676 -20.33695 -19.78499 -17.25042 -16.31253 -16.07729 -15.49661 -15.25042 -14.88171 -14.17560 -13.90125 -13.77482 -13.57442 -13.25899 -13.08602 -12.75458 -12.44966 -12.13431 -11.89479 -11.61038 -11.59626 -11.46910 -11.35927 -11.03086 -10.93765 -10.90325 -10.73216 -10.50321 -10.39300 -10.28590 -9.68353 -9.50617 -9.32199 -9.09468 -7.92277 -7.38980 -7.24806 -6.72592 -4.30842 2.78343 3.08842 3.12874 3.13268 3.21614 3.96069 3.98274 4.47215 4.68052 4.77686 4.91225 5.01506 5.09809 5.29737 5.31843 5.36224 5.59387 5.65844 5.75383 5.77827 5.78661 5.88935 5.91568 6.01457 6.07066 6.09838 6.27422 6.31756 6.41222 6.47018 6.50156 6.94024 7.00262 7.11422 7.34277 7.40823 7.51528 7.66400 7.83515 7.96369 8.10289 8.20074 8.35039 8.69165 8.94037 9.02700 10.22392 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024834 B = 0.003766 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.205975 B = 7433.514457 C = 7928.978223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 H 0.083 0.917 4 N -0.670 5.670 5 C 0.123 3.877 6 C -0.210 4.210 7 C -0.085 4.085 8 C -0.227 4.227 9 C 0.113 3.887 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.077 3.923 13 N -0.794 5.794 14 Si 0.905 3.095 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.261 1.261 18 C -0.167 4.167 19 C -0.079 4.079 20 C 0.087 3.913 21 H 0.060 0.940 22 C -0.146 4.146 23 C -0.152 4.152 24 C 0.047 3.953 25 O -0.364 6.364 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.346 0.654 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.279 0.721 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.687 1.372 14.831 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.024 4.024 3 H 0.101 0.899 4 N -0.301 5.301 5 C -0.004 4.004 6 C -0.211 4.211 7 C -0.104 4.104 8 C -0.247 4.247 9 C 0.110 3.890 10 C -0.495 4.495 11 H 0.094 0.906 12 C -0.141 4.141 13 N -0.420 5.420 14 Si 0.730 3.270 15 H -0.196 1.196 16 H -0.201 1.201 17 H -0.184 1.184 18 C -0.186 4.186 19 C -0.098 4.098 20 C 0.029 3.971 21 H 0.078 0.922 22 C -0.183 4.183 23 C -0.190 4.190 24 C -0.030 4.030 25 O -0.283 6.283 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.166 0.834 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.994 1.520 14.805 15.181 hybrid contribution -0.330 -0.260 -0.630 0.757 sum -3.324 1.260 14.174 14.613 Atomic orbital electron populations 1.22441 0.97300 1.02575 1.01489 1.21584 0.92740 0.97183 0.90909 0.89886 1.60630 1.56888 1.09620 1.02974 1.20600 0.97481 0.93780 0.88584 1.18894 0.93760 1.09818 0.98674 1.20356 0.96321 0.98260 0.95460 1.20938 0.95321 1.08079 1.00328 1.17614 0.90586 0.89350 0.91402 1.19587 1.02865 1.16316 1.10691 0.90567 1.25888 0.96876 0.94705 0.96584 1.69837 1.16561 1.18407 1.37188 0.86351 0.78731 0.81753 0.80178 1.19642 1.20062 1.18446 1.21281 0.99679 1.02946 0.94686 1.20475 0.93701 0.98935 0.96683 1.23031 0.93891 0.83581 0.96625 0.92224 1.22905 0.95618 0.96203 1.03601 1.22875 0.97771 0.97272 1.01065 1.23321 0.88639 0.97798 0.93267 1.89136 1.53872 1.19687 1.65575 0.91779 0.92779 0.92718 0.83437 0.92172 0.96432 0.89966 0.89230 0.90977 0.86705 0.89579 0.88308 0.91841 0.90562 0.91435 0.89539 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 9.05 37.16 0.34 -1.80 16 2 C 0.09 1.12 2.46 -67.71 -0.17 0.95 16 3 H 0.08 1.01 7.80 -51.93 -0.40 0.61 16 4 N -0.67 -10.61 5.10 -107.99 -0.55 -11.16 16 5 C 0.12 2.15 5.60 -4.98 -0.03 2.12 16 6 C -0.21 -4.55 5.41 -104.33 -0.56 -5.11 16 7 C -0.09 -1.92 9.67 -39.66 -0.38 -2.30 16 8 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 9 C 0.11 3.06 5.56 -106.82 -0.59 2.46 16 10 C -0.46 -12.54 9.05 -37.74 -0.34 -12.88 16 11 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 12 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 13 N -0.79 -20.77 11.00 55.55 0.61 -20.16 16 14 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 15 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 18 C -0.17 -4.38 8.69 -38.87 -0.34 -4.72 16 19 C -0.08 -1.86 9.67 -39.66 -0.38 -2.24 16 20 C 0.09 1.06 3.08 -25.95 -0.08 0.98 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 C -0.15 -1.73 6.53 -25.16 -0.16 -1.90 16 23 C -0.15 -1.65 7.09 -25.16 -0.18 -1.83 16 24 C 0.05 0.52 7.63 37.93 0.29 0.81 16 25 O -0.36 -5.02 10.70 -35.23 -0.38 -5.40 16 26 H 0.06 0.83 7.79 -51.93 -0.40 0.42 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.66 7.45 -51.93 -0.39 0.28 16 29 H 0.35 5.90 8.46 -39.29 -0.33 5.57 16 30 H 0.06 1.02 8.00 -51.92 -0.42 0.60 16 31 H 0.02 0.29 7.37 -51.93 -0.38 -0.09 16 32 H 0.08 1.65 8.06 -52.49 -0.42 1.22 16 33 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 34 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 35 H 0.12 3.13 6.22 -52.49 -0.33 2.80 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.10 1.42 7.13 -51.93 -0.37 1.05 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -27.45 339.74 -10.10 -37.55 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.80 Total: 9.87 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -3.07 Total: -29.65 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.06 Total: -31.32 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.38 Total: -5.40 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.45 -10.10 -37.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348195734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.013 kcal (2) G-P(sol) polarization free energy of solvation -27.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds