Wall clock time and date at job start Thu Apr 9 2020 13:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47205 * 2 1 4 4 N 1.46901 * 109.47144 * 240.00346 * 2 1 3 5 5 C 1.46897 * 111.00297 * 84.99772 * 4 2 1 6 6 C 1.50694 * 109.47438 * 180.02562 * 5 4 2 7 7 C 1.38631 * 119.74861 * 89.99798 * 6 5 4 8 8 C 1.37621 * 120.24953 * 179.97438 * 7 6 5 9 9 C 1.40722 * 119.74281 * 0.02562 * 8 7 6 10 10 C 1.41397 * 120.24551 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99675 * 335.21328 * 10 9 8 12 12 C 1.39941 * 120.00117 * 154.93122 * 10 9 8 13 13 N 1.30831 * 120.00117 * 342.49004 * 12 10 9 14 14 Si 1.86797 * 120.00094 * 162.49029 * 12 10 9 15 15 H 1.48500 * 109.47305 * 94.51868 * 14 12 10 16 16 H 1.48502 * 109.47201 * 214.52371 * 14 12 10 17 17 H 1.48507 * 109.46854 * 334.52024 * 14 12 10 18 18 C 1.40717 * 119.51112 * 0.26461 * 9 8 7 19 19 C 1.37618 * 119.74540 * 359.47538 * 18 9 8 20 20 C 1.52998 * 109.46979 * 120.00063 * 2 1 3 21 21 H 1.08998 * 110.33409 * 300.69908 * 20 2 1 22 22 C 1.54488 * 110.36951 * 178.44865 * 20 2 1 23 23 C 1.54514 * 104.06346 * 217.19034 * 22 20 2 24 24 C 1.54480 * 104.05956 * 0.02562 * 23 22 20 25 25 O 1.44423 * 110.37474 * 62.95334 * 20 2 1 26 26 H 1.08999 * 109.46853 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46588 * 299.99953 * 1 2 3 28 28 H 1.08997 * 109.47061 * 59.99580 * 1 2 3 29 29 H 1.00897 * 110.99509 * 321.04510 * 4 2 1 30 30 H 1.09008 * 109.46958 * 59.99913 * 5 4 2 31 31 H 1.09003 * 109.47154 * 300.00403 * 5 4 2 32 32 H 1.07993 * 119.87748 * 0.02847 * 7 6 5 33 33 H 1.08002 * 120.13117 * 179.97438 * 8 7 6 34 34 H 0.96999 * 119.99768 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.12568 * 179.70310 * 18 9 8 36 36 H 1.07997 * 119.88044 * 180.22646 * 19 18 9 37 37 H 1.08995 * 110.51205 * 335.83711 * 22 20 2 38 38 H 1.09001 * 110.50745 * 98.41175 * 22 20 2 39 39 H 1.08994 * 110.50830 * 118.64297 * 23 22 20 40 40 H 1.08998 * 110.50910 * 241.22098 * 23 22 20 41 41 H 1.08997 * 110.37067 * 142.80921 * 24 23 22 42 42 H 1.09001 * 110.37320 * 265.03041 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5873 -0.5217 -3.5560 7 6 1.6872 -1.1518 -4.4013 8 6 2.1368 -1.8339 -5.5087 9 6 3.5163 -1.8907 -5.7812 10 6 3.9900 -2.5891 -6.9157 11 1 3.4019 -3.3882 -7.3423 12 6 5.2180 -2.2409 -7.4893 13 7 5.7633 -1.0836 -7.2155 14 14 6.0789 -3.4286 -8.6460 15 1 5.7211 -3.0998 -10.0492 16 1 7.5489 -3.3133 -8.4698 17 1 5.6509 -4.8170 -8.3383 18 6 4.4212 -1.2526 -4.9128 19 6 3.9486 -0.5717 -3.8143 20 6 2.0400 -0.7213 1.2492 21 1 1.6743 -0.2257 2.1485 22 6 3.5842 -0.7674 1.2508 23 6 3.9178 -2.1542 1.8449 24 6 2.5357 -2.7821 2.1314 25 8 1.6272 -2.1052 1.2346 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.4496 -1.4978 -1.4100 30 1 2.7589 1.0463 -2.1182 31 1 1.0871 0.6164 -2.5525 32 1 0.6290 -1.1064 -4.1905 33 1 1.4339 -2.3245 -6.1658 34 1 6.6147 -0.8425 -7.6128 35 1 5.4822 -1.2940 -5.1098 36 1 4.6409 -0.0780 -3.1484 37 1 3.9698 -0.6844 0.2347 38 1 3.9893 0.0266 1.8781 39 1 4.4682 -2.7568 1.1225 40 1 4.4898 -2.0473 2.7665 41 1 2.5533 -3.8511 1.9194 42 1 2.2464 -2.6062 3.1675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348195734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:34 Heat of formation + Delta-G solvation = -55.424065 kcal Electronic energy + Delta-G solvation = -21027.888045 eV Core-core repulsion = 17971.010909 eV Total energy + Delta-G solvation = -3056.877136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47928 -39.49553 -37.32367 -35.53590 -33.00607 -32.80507 -31.19043 -30.63439 -28.95674 -27.64301 -24.92388 -24.17713 -22.83493 -22.08823 -21.65341 -21.27254 -19.20005 -17.33979 -17.19864 -17.02051 -16.45786 -16.18500 -15.76881 -15.54759 -15.16727 -14.77154 -14.47429 -14.37948 -14.05586 -13.82440 -13.77606 -13.30547 -13.24707 -13.07734 -12.69911 -12.60927 -12.47650 -12.24473 -12.22893 -12.04134 -11.88188 -11.66336 -11.43692 -11.29016 -11.18424 -10.98977 -10.54810 -9.31957 -9.27998 -9.04064 -8.62305 -6.31533 0.97597 1.17512 1.37704 1.48743 1.54303 2.21590 2.71649 3.09701 3.41355 3.76034 3.83062 3.99406 4.16477 4.20359 4.29694 4.31211 4.43013 4.44419 4.48531 4.60308 4.67336 4.70367 4.83450 4.85192 4.93317 4.99256 5.03715 5.08429 5.10323 5.18286 5.22837 5.32434 5.40912 5.48480 5.50075 5.73826 5.96730 6.03618 6.12509 6.25900 6.36593 6.42137 6.59065 6.73489 6.96528 7.06847 8.35280 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024834 B = 0.003766 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.205975 B = 7433.514457 C = 7928.978223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 H 0.094 0.906 4 N -0.676 5.676 5 C 0.132 3.868 6 C -0.196 4.196 7 C -0.086 4.086 8 C -0.244 4.244 9 C 0.080 3.920 10 C -0.506 4.506 11 H 0.072 0.928 12 C 0.036 3.964 13 N -0.827 5.827 14 Si 0.980 3.020 15 H -0.262 1.262 16 H -0.265 1.265 17 H -0.260 1.260 18 C -0.190 4.190 19 C -0.085 4.085 20 C 0.086 3.914 21 H 0.082 0.918 22 C -0.146 4.146 23 C -0.151 4.151 24 C 0.043 3.957 25 O -0.390 6.390 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.339 0.661 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.287 0.713 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 1.907 16.575 17.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.024 4.024 3 H 0.112 0.888 4 N -0.306 5.306 5 C 0.004 3.996 6 C -0.197 4.197 7 C -0.105 4.105 8 C -0.264 4.264 9 C 0.077 3.923 10 C -0.536 4.536 11 H 0.090 0.910 12 C -0.178 4.178 13 N -0.453 5.453 14 Si 0.801 3.199 15 H -0.187 1.187 16 H -0.189 1.189 17 H -0.184 1.184 18 C -0.210 4.210 19 C -0.103 4.103 20 C 0.029 3.971 21 H 0.100 0.900 22 C -0.184 4.184 23 C -0.188 4.188 24 C -0.034 4.034 25 O -0.310 6.310 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.157 0.843 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.516 2.068 16.569 17.063 hybrid contribution -0.254 -0.356 -1.022 1.112 sum -3.770 1.711 15.546 16.088 Atomic orbital electron populations 1.22356 0.96369 1.02021 1.02363 1.21699 0.93477 0.97503 0.89765 0.88771 1.60534 1.57506 1.09334 1.03268 1.20487 0.98146 0.93536 0.87424 1.19354 0.92853 1.08014 0.99525 1.20680 0.98063 0.97228 0.94524 1.21153 0.94782 1.08905 1.01562 1.17951 0.91749 0.90431 0.92125 1.19830 1.04621 1.17291 1.11832 0.90964 1.26730 0.96915 0.96151 0.98040 1.69886 1.17183 1.19869 1.38406 0.85228 0.77714 0.78969 0.77990 1.18654 1.18931 1.18404 1.21243 0.98849 1.04764 0.96120 1.20713 0.95130 0.98456 0.96043 1.23126 0.93901 0.83163 0.96954 0.89981 1.22877 0.95644 0.97434 1.02415 1.22871 0.97916 0.96436 1.01610 1.23478 0.88198 0.97753 0.93964 1.89109 1.54731 1.20608 1.66505 0.93006 0.90797 0.92942 0.84303 0.91274 0.95061 0.87025 0.88878 0.90223 0.88583 0.88003 0.91151 0.89827 0.92304 0.89128 0.89454 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 9.05 71.98 0.65 -2.99 16 2 C 0.09 1.98 2.46 44.92 0.11 2.10 16 3 H 0.09 1.99 7.80 -2.39 -0.02 1.98 16 4 N -0.68 -20.25 5.10 -495.57 -2.53 -22.78 16 5 C 0.13 4.33 5.60 85.56 0.48 4.81 16 6 C -0.20 -8.32 5.41 -19.68 -0.11 -8.43 16 7 C -0.09 -3.83 9.67 22.22 0.21 -3.62 16 8 C -0.24 -12.45 9.80 22.73 0.22 -12.23 16 9 C 0.08 4.48 5.56 -21.29 -0.12 4.36 16 10 C -0.51 -28.43 9.05 23.46 0.21 -28.22 16 11 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 12 C 0.04 1.88 5.14 85.25 0.44 2.32 16 13 N -0.83 -44.58 11.00 21.83 0.24 -44.34 16 14 Si 0.98 39.36 29.59 68.60 2.03 41.39 16 15 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 17 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 18 C -0.19 -10.38 8.69 22.73 0.20 -10.18 16 19 C -0.08 -4.01 9.67 22.22 0.21 -3.80 16 20 C 0.09 1.88 3.08 31.10 0.10 1.98 16 21 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 22 C -0.15 -3.17 6.53 31.62 0.21 -2.97 16 23 C -0.15 -3.01 7.09 31.61 0.22 -2.78 16 24 C 0.04 0.86 7.63 72.49 0.55 1.41 16 25 O -0.39 -10.05 10.70 -148.98 -1.59 -11.64 16 26 H 0.05 1.23 7.79 -2.39 -0.02 1.21 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.12 7.45 -2.39 -0.02 1.11 16 29 H 0.34 11.10 8.46 -89.70 -0.76 10.34 16 30 H 0.07 2.17 8.00 -2.38 -0.02 2.15 16 31 H 0.03 0.95 7.37 -2.39 -0.02 0.94 16 32 H 0.11 4.25 8.06 -2.91 -0.02 4.22 16 33 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 35 H 0.10 5.50 6.22 -2.91 -0.02 5.48 16 36 H 0.10 4.41 8.06 -2.91 -0.02 4.38 16 37 H 0.07 1.95 7.13 -2.39 -0.02 1.93 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -60.98 339.74 1.98 -59.00 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: 0.24 Total: 36.61 kcal Atomic # 6 Polarization: -61.83 SS G_CDS: 3.60 Total: -58.23 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -2.29 Total: -67.12 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.59 Total: -11.64 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -60.98 1.98 -59.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348195734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.574 kcal (2) G-P(sol) polarization free energy of solvation -60.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds