Wall clock time and date at job start Thu Apr 9 2020 13:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99909 * 2 1 4 4 C 1.50696 * 109.46993 * 66.04683 * 3 2 1 5 5 C 1.38641 * 119.74727 * 269.72502 * 4 3 2 6 6 C 1.37620 * 120.24613 * 179.72635 * 5 4 3 7 7 C 1.40714 * 119.74484 * 0.52617 * 6 5 4 8 8 C 1.41400 * 120.24087 * 179.72849 * 7 6 5 9 9 H 1.07995 * 120.00097 * 204.40351 * 8 7 6 10 10 C 1.39950 * 120.00124 * 24.40286 * 8 7 6 11 11 N 1.30822 * 119.99528 * 17.84990 * 10 8 7 12 12 Si 1.86794 * 119.99964 * 197.84644 * 10 8 7 13 13 H 1.48497 * 109.47266 * 60.00219 * 12 10 8 14 14 H 1.48502 * 109.46874 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47196 * 300.00096 * 12 10 8 16 16 C 1.40707 * 119.51248 * 359.74856 * 7 6 5 17 17 C 1.37616 * 119.74723 * 359.97438 * 16 7 6 18 18 C 1.46896 * 111.00266 * 236.04572 * 2 1 3 19 19 H 1.08993 * 110.43590 * 66.49471 * 18 2 1 20 20 C 1.54892 * 110.48893 * 189.18053 * 18 2 1 21 21 C 1.54882 * 102.75069 * 156.61817 * 20 18 2 22 22 C 1.54274 * 104.19615 * 322.05688 * 21 20 18 23 23 C 1.53870 * 106.59849 * 23.61126 * 22 21 20 24 24 H 1.08993 * 110.03540 * 119.28205 * 23 22 21 25 25 O 1.42894 * 110.07333 * 240.69204 * 23 22 21 26 26 H 1.09002 * 109.46916 * 60.00498 * 1 2 3 27 27 H 1.08999 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47273 * 300.00379 * 1 2 3 29 29 H 1.08993 * 109.47067 * 306.03928 * 3 2 1 30 30 H 1.09004 * 109.46712 * 186.03991 * 3 2 1 31 31 H 1.07997 * 119.87422 * 359.97438 * 5 4 3 32 32 H 1.08001 * 120.12327 * 180.27578 * 6 5 4 33 33 H 0.97010 * 119.99383 * 179.97438 * 11 10 8 34 34 H 1.07999 * 120.12927 * 179.97438 * 16 7 6 35 35 H 1.08001 * 119.87817 * 180.02562 * 17 16 7 36 36 H 1.08993 * 110.75751 * 274.93794 * 20 18 2 37 37 H 1.09004 * 110.75243 * 38.30157 * 20 18 2 38 38 H 1.09002 * 110.48769 * 203.38126 * 21 20 18 39 39 H 1.09002 * 110.60190 * 80.78933 * 21 20 18 40 40 H 1.08996 * 110.02972 * 264.32133 * 22 21 20 41 41 H 1.08998 * 110.03064 * 142.89593 * 22 21 20 42 42 H 0.96700 * 114.00252 * 297.18937 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 6 0.4489 2.7545 1.4007 6 6 0.1087 3.3708 2.5832 7 6 0.9770 3.2901 3.6876 8 6 0.6405 3.9241 4.9058 9 1 1.4180 4.2084 5.5994 10 6 -0.7001 4.1833 5.2129 11 7 -1.6512 3.5512 4.5747 12 14 -1.1312 5.4314 6.5341 13 1 -0.5864 6.7602 6.1564 14 1 -2.6075 5.5209 6.6676 15 1 -0.5425 5.0050 7.8290 16 6 2.1827 2.5742 3.5705 17 6 2.4999 1.9610 2.3800 18 6 1.9955 -0.7660 -1.1375 19 1 1.7516 -0.2690 -2.0764 20 6 3.5270 -0.9539 -1.0022 21 6 3.7939 -2.2144 -1.8618 22 6 2.5789 -3.1243 -1.5865 23 6 1.4354 -2.2034 -1.1260 24 1 0.5933 -2.2815 -1.8135 25 8 1.0226 -2.5573 0.1954 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.5612 1.9273 -0.8309 30 1 3.0797 1.3444 -0.1081 31 1 -0.2137 2.8189 0.5504 32 1 -0.8193 3.9176 2.6620 33 1 -2.5804 3.7306 4.7878 34 1 2.8566 2.5063 4.4116 35 1 3.4245 1.4107 2.2879 36 1 4.0590 -0.0921 -1.4048 37 1 3.8043 -1.1293 0.0373 38 1 4.7157 -2.7031 -1.5462 39 1 3.8438 -1.9542 -2.9191 40 1 2.8198 -3.8415 -0.8019 41 1 2.2916 -3.6494 -2.4974 42 1 0.6606 -3.4510 0.2683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352659858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:45 Heat of formation + Delta-G solvation = -31.946445 kcal Electronic energy + Delta-G solvation = -21391.096891 eV Core-core repulsion = 18335.237821 eV Total energy + Delta-G solvation = -3055.859070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.36654 -37.60848 -35.60163 -34.55976 -33.43446 -30.29144 -29.22851 -28.20457 -27.45323 -26.70194 -24.55193 -22.33238 -20.83501 -20.68077 -19.71345 -19.45284 -17.29546 -17.19600 -15.97271 -15.21768 -15.01204 -14.73913 -14.37548 -14.04118 -13.71441 -13.58044 -13.27522 -12.79537 -12.49147 -12.40513 -11.99121 -11.82985 -11.51456 -11.39458 -11.24353 -11.09746 -10.94393 -10.85704 -10.79338 -10.66780 -10.52188 -10.26322 -10.13723 -9.79282 -9.45444 -9.28438 -9.04782 -7.71476 -7.32153 -7.17921 -6.68301 -4.26375 2.82750 3.10033 3.12962 3.18082 3.25718 3.98398 4.17159 4.44634 4.57433 4.61557 4.81711 4.98804 5.25032 5.37405 5.42671 5.58050 5.67261 5.77058 5.78087 5.86412 5.89795 5.91069 6.02330 6.11873 6.15887 6.27706 6.37662 6.41224 6.49407 6.53299 6.72573 7.03465 7.15342 7.36962 7.47790 7.60728 7.66896 7.72664 7.88028 8.00726 8.14001 8.25357 8.39763 8.72770 8.98213 9.07364 10.26025 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036942 B = 0.003765 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.756941 B = 7435.889389 C = 7688.188617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.508 5.508 3 C 0.116 3.884 4 C -0.202 4.202 5 C -0.094 4.094 6 C -0.166 4.166 7 C 0.112 3.888 8 C -0.465 4.465 9 H 0.076 0.924 10 C 0.077 3.923 11 N -0.794 5.794 12 Si 0.906 3.094 13 H -0.264 1.264 14 H -0.279 1.279 15 H -0.266 1.266 16 C -0.228 4.228 17 C -0.069 4.069 18 C 0.083 3.917 19 H 0.045 0.955 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.155 4.155 23 C 0.107 3.893 24 H 0.048 0.952 25 O -0.532 6.532 26 H 0.004 0.996 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.279 0.721 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 -9.666 -11.514 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.232 5.232 3 C -0.010 4.010 4 C -0.204 4.204 5 C -0.113 4.113 6 C -0.186 4.186 7 C 0.110 3.890 8 C -0.495 4.495 9 H 0.094 0.906 10 C -0.141 4.141 11 N -0.419 5.419 12 Si 0.731 3.269 13 H -0.189 1.189 14 H -0.204 1.204 15 H -0.191 1.191 16 C -0.248 4.248 17 C -0.087 4.087 18 C -0.026 4.026 19 H 0.063 0.937 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.193 4.193 23 C 0.047 3.953 24 H 0.066 0.934 25 O -0.335 6.335 26 H 0.022 0.978 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 4.268 -9.315 -10.966 15.008 hybrid contribution -0.846 0.273 -0.338 0.951 sum 3.422 -9.043 -11.304 14.874 Atomic orbital electron populations 1.22443 0.87436 1.01798 1.00316 1.62066 1.07958 1.13501 1.39630 1.20809 0.98359 0.86695 0.95132 1.18837 0.98263 1.08045 0.95222 1.20511 0.95201 0.98829 0.96771 1.21260 1.01528 1.03967 0.91810 1.17592 0.90504 0.88428 0.92516 1.19554 0.92291 1.34389 1.03273 0.90621 1.25887 0.96308 0.94945 0.96940 1.69837 1.01250 1.33520 1.37333 0.86404 0.77674 0.81627 0.81193 1.18908 1.20420 1.19067 1.20953 1.00801 1.06120 0.96899 1.20302 0.97312 0.98024 0.93106 1.22548 0.95138 0.92130 0.92820 0.93704 1.22545 0.94556 0.96858 1.01212 1.22255 0.97687 0.96316 0.99664 1.22907 0.96416 0.98656 1.01328 1.22390 0.94348 0.94101 0.84470 0.93440 1.86875 1.83700 1.35129 1.27836 0.97756 0.90978 0.90287 0.96396 0.91851 0.90070 0.86650 0.90973 0.89229 0.89618 0.91797 0.89849 0.91533 0.91886 0.90736 0.91848 0.79129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 8.63 60.06 0.52 1.02 16 2 N -0.51 -8.97 4.13 -234.33 -0.97 -9.94 16 3 C 0.12 2.18 5.00 -4.98 -0.02 2.15 16 4 C -0.20 -4.55 4.90 -104.33 -0.51 -5.06 16 5 C -0.09 -2.25 7.94 -39.66 -0.31 -2.57 16 6 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 7 C 0.11 3.08 5.57 -106.83 -0.60 2.48 16 8 C -0.47 -12.70 9.05 -37.74 -0.34 -13.04 16 9 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 10 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 11 N -0.79 -21.02 10.95 55.55 0.61 -20.41 16 12 Si 0.91 19.08 29.59 -169.99 -5.03 14.05 16 13 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 14 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 16 C -0.23 -5.83 9.80 -38.88 -0.38 -6.21 16 17 C -0.07 -1.61 9.67 -39.66 -0.38 -2.00 16 18 C 0.08 1.16 2.52 -66.05 -0.17 1.00 16 19 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 20 C -0.11 -1.44 5.47 -24.74 -0.14 -1.57 16 21 C -0.12 -1.19 6.83 -25.07 -0.17 -1.36 16 22 C -0.15 -1.49 6.61 -25.61 -0.17 -1.66 16 23 C 0.11 1.27 3.30 -25.61 -0.08 1.19 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 O -0.53 -7.19 10.54 -35.23 -0.37 -7.56 16 26 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 27 H 0.07 1.19 5.61 -51.93 -0.29 0.90 16 28 H 0.08 1.65 6.17 -51.93 -0.32 1.33 16 29 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 30 H 0.06 1.11 6.71 -51.93 -0.35 0.76 16 31 H 0.08 1.79 8.04 -52.49 -0.42 1.37 16 32 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 33 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 34 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 36 H 0.06 0.76 7.73 -51.93 -0.40 0.36 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.71 7.96 -51.93 -0.41 0.29 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.36 3.23 9.11 45.56 0.42 3.65 16 LS Contribution 330.53 15.07 4.98 4.98 Total: -1.00 -29.44 330.53 -9.85 -39.28 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.88 Total: 8.11 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -3.19 Total: -28.52 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: -0.36 Total: -30.35 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.37 Total: -7.56 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.44 -9.85 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352659858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.337 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds