Wall clock time and date at job start Thu Apr 9 2020 13:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46897 * 2 1 4 4 C 1.46504 * 120.00397 * 270.00034 * 3 2 1 5 5 C 1.53003 * 109.47200 * 270.00763 * 4 3 2 6 6 C 1.34778 * 119.99911 * 90.00588 * 3 2 1 7 7 O 1.21283 * 119.99788 * 359.97438 * 6 3 2 8 8 C 1.50698 * 119.99943 * 179.97438 * 6 3 2 9 9 C 1.53001 * 109.47309 * 180.02562 * 8 6 3 10 10 H 1.09002 * 109.46683 * 305.97825 * 9 8 6 11 11 C 1.50701 * 109.46938 * 65.97575 * 9 8 6 12 12 H 1.07996 * 120.00200 * 26.91362 * 11 9 8 13 13 C 1.37882 * 119.99637 * 206.91188 * 11 9 8 14 14 N 1.31508 * 120.00298 * 353.28146 * 13 11 9 15 15 Si 1.86804 * 119.99594 * 173.55553 * 13 11 9 16 16 H 1.48507 * 109.47029 * 179.72580 * 15 13 11 17 17 H 1.48500 * 109.47296 * 299.72146 * 15 13 11 18 18 H 1.48501 * 109.47052 * 59.72587 * 15 13 11 19 19 C 1.50691 * 109.47347 * 185.97825 * 9 8 6 20 20 C 1.38237 * 120.00366 * 294.44456 * 19 9 8 21 21 C 1.38235 * 120.00426 * 179.79030 * 20 19 9 22 22 C 1.38236 * 119.99747 * 0.44087 * 21 20 19 23 23 C 1.38240 * 120.00193 * 359.81061 * 22 21 20 24 24 C 1.38235 * 120.00109 * 114.71927 * 19 9 8 25 25 H 1.09004 * 109.47112 * 299.99378 * 1 2 3 26 26 H 1.08993 * 109.47770 * 59.99481 * 1 2 3 27 27 H 1.09003 * 109.46873 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46881 * 240.00194 * 2 1 3 29 29 H 1.08999 * 109.47345 * 120.00591 * 2 1 3 30 30 H 1.09007 * 109.46536 * 30.00025 * 4 3 2 31 31 H 1.08999 * 109.47329 * 150.00310 * 4 3 2 32 32 H 1.09003 * 109.46666 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.46716 * 299.99742 * 5 4 3 34 34 H 1.08999 * 109.47349 * 59.99560 * 5 4 3 35 35 H 1.08998 * 109.46893 * 60.00147 * 8 6 3 36 36 H 1.09000 * 109.47344 * 300.00377 * 8 6 3 37 37 H 0.96999 * 120.00265 * 354.68917 * 14 13 11 38 38 H 1.08005 * 119.99617 * 359.97438 * 20 19 9 39 39 H 1.07995 * 119.99965 * 180.27799 * 21 20 19 40 40 H 1.07997 * 119.99991 * 179.83622 * 22 21 20 41 41 H 1.07993 * 120.00167 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00066 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8314 -1.7105 6 6 2.2430 2.0165 1.1672 7 8 2.0405 1.4448 2.2175 8 6 2.7458 3.4371 1.1672 9 6 2.9164 3.9178 2.6097 10 1 1.9831 3.7728 3.1538 11 6 4.0139 3.1284 3.2757 12 1 4.8073 2.6994 2.6817 13 6 4.0051 2.9540 4.6434 14 7 3.1169 3.5838 5.3809 15 14 5.2596 1.8289 5.4495 16 1 5.0431 1.8182 6.9187 17 1 5.1043 0.4517 4.9163 18 1 6.6288 2.3225 5.1546 19 6 3.2773 5.3808 2.6124 20 6 4.4837 5.7962 2.0803 21 6 4.8129 7.1388 2.0788 22 6 3.9396 8.0651 2.6176 23 6 2.7355 7.6493 3.1544 24 6 2.4045 6.3071 3.1520 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.5816 1.6877 -2.0284 31 1 2.0955 3.1411 -1.1383 32 1 3.8889 2.3450 -2.6547 33 1 4.3882 2.2155 -0.9508 34 1 3.8744 0.7622 -1.8409 35 1 2.0281 4.0765 0.6533 36 1 3.7061 3.4827 0.6535 37 1 2.5184 4.2294 4.9737 38 1 5.1678 5.0720 1.6631 39 1 5.7534 7.4637 1.6591 40 1 4.1979 9.1137 2.6189 41 1 2.0531 8.3729 3.5750 42 1 1.4638 5.9822 3.5713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353340333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:48 Heat of formation + Delta-G solvation = -25.048785 kcal Electronic energy + Delta-G solvation = -21873.337371 eV Core-core repulsion = 18817.777405 eV Total energy + Delta-G solvation = -3055.559965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.48287 -38.37031 -35.72492 -34.26545 -32.16018 -31.15042 -30.10222 -29.43193 -28.50142 -25.19413 -23.41608 -23.21355 -22.15974 -21.60719 -19.90576 -18.31573 -16.89958 -16.55490 -15.91450 -15.72632 -14.99756 -14.27074 -14.03312 -13.75533 -13.63459 -13.56927 -13.27500 -13.00717 -12.59276 -12.54487 -12.28624 -12.08757 -11.97171 -11.86321 -11.52641 -11.39176 -11.14816 -10.80841 -10.75297 -10.69272 -10.41322 -10.10699 -10.02114 -9.63690 -8.95703 -8.58497 -8.29331 -8.21330 -8.13034 -7.62287 -6.19951 -3.88505 2.19892 2.25560 3.44085 3.48567 3.51572 3.57109 3.72694 4.62111 4.69425 4.96312 5.07468 5.24287 5.38069 5.46434 5.51394 5.56390 5.58583 5.60451 5.64736 5.75029 5.77446 5.86838 5.90698 6.01593 6.12419 6.14460 6.20323 6.24278 6.33448 6.34946 6.44823 6.70716 6.79710 6.92841 7.01534 7.22323 7.24339 7.39489 7.74816 7.86663 7.94349 8.25510 8.54120 8.98793 9.03979 9.80109 11.19546 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012826 B = 0.007234 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.583391 B = 3869.784738 C = 5087.752703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.631 5.631 4 C 0.110 3.890 5 C -0.172 4.172 6 C 0.515 3.485 7 O -0.497 6.497 8 C -0.114 4.114 9 C 0.072 3.928 10 H 0.049 0.951 11 C -0.565 4.565 12 H 0.044 0.956 13 C 0.032 3.968 14 N -0.906 5.906 15 Si 1.059 2.941 16 H -0.284 1.284 17 H -0.289 1.289 18 H -0.291 1.291 19 C -0.033 4.033 20 C -0.106 4.106 21 C -0.130 4.130 22 C -0.153 4.153 23 C -0.124 4.124 24 C -0.130 4.130 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.271 0.729 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 0.393 -14.221 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.369 5.369 4 C -0.014 4.014 5 C -0.231 4.231 6 C 0.304 3.696 7 O -0.369 6.369 8 C -0.154 4.154 9 C 0.053 3.947 10 H 0.067 0.933 11 C -0.603 4.603 12 H 0.062 0.938 13 C -0.174 4.174 14 N -0.542 5.542 15 Si 0.889 3.111 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.217 1.217 19 C -0.033 4.033 20 C -0.124 4.124 21 C -0.148 4.148 22 C -0.171 4.171 23 C -0.143 4.143 24 C -0.149 4.149 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.372 -0.583 -12.135 12.226 hybrid contribution -0.302 0.703 -1.544 1.723 sum -1.674 0.121 -13.679 13.782 Atomic orbital electron populations 1.22121 0.96620 1.01534 1.02072 1.21242 0.93816 0.83483 1.02418 1.48215 1.68477 1.13967 1.06201 1.21417 0.96239 0.97925 0.85794 1.22232 0.97462 1.01948 1.01431 1.20870 0.77009 0.89192 0.82565 1.90736 1.48527 1.67192 1.30426 1.21698 1.00403 0.91870 1.01431 1.17873 0.99277 0.87106 0.90432 0.93337 1.21513 1.09727 1.34790 0.94259 0.93762 1.25566 0.99280 0.98161 0.94372 1.70728 1.19459 1.24891 1.39095 0.83696 0.75032 0.76142 0.76271 1.20941 1.21519 1.21744 1.20864 0.92800 0.97390 0.92273 1.20918 0.96711 0.94541 1.00258 1.21010 0.98865 0.93816 1.01116 1.20822 0.95475 0.98470 1.02303 1.20962 0.96941 0.95822 1.00533 1.21076 0.99822 0.92746 1.01213 0.92157 0.93104 0.92211 0.91601 0.90084 0.91207 0.90427 0.91975 0.91898 0.92682 0.91845 0.90299 0.91801 0.86739 0.87468 0.87598 0.87467 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.11 1.59 6.13 -4.04 -0.02 1.57 16 3 N -0.63 -9.92 2.47 -173.68 -0.43 -10.35 16 4 C 0.11 1.30 5.93 -4.04 -0.02 1.27 16 5 C -0.17 -1.89 10.24 37.16 0.38 -1.51 16 6 C 0.52 10.60 7.43 -10.99 -0.08 10.52 16 7 O -0.50 -12.70 14.60 5.55 0.08 -12.62 16 8 C -0.11 -2.26 3.51 -27.88 -0.10 -2.36 16 9 C 0.07 1.75 1.23 -92.93 -0.11 1.64 16 10 H 0.05 1.34 6.59 -51.93 -0.34 1.00 16 11 C -0.57 -15.56 6.35 -34.44 -0.22 -15.77 16 12 H 0.04 1.22 7.82 -52.49 -0.41 0.81 16 13 C 0.03 0.92 5.45 -17.82 -0.10 0.83 16 14 N -0.91 -27.98 13.56 55.43 0.75 -27.23 16 15 Si 1.06 26.57 29.91 -169.99 -5.08 21.48 16 16 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 C -0.03 -0.73 4.53 -104.63 -0.47 -1.20 16 20 C -0.11 -2.19 8.90 -39.58 -0.35 -2.54 16 21 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 22 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 23 C -0.12 -2.30 10.05 -39.58 -0.40 -2.69 16 24 C -0.13 -2.75 9.18 -39.58 -0.36 -3.11 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 29 H 0.08 1.34 7.42 -51.93 -0.39 0.95 16 30 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 31 H 0.08 0.90 6.44 -51.93 -0.33 0.56 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.81 7.22 -51.93 -0.37 0.44 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 1.11 7.40 -51.93 -0.38 0.73 16 36 H 0.08 1.47 7.01 -51.93 -0.36 1.11 16 37 H 0.27 8.23 6.24 -40.82 -0.25 7.97 16 38 H 0.11 2.31 7.85 -52.48 -0.41 1.90 16 39 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.11 2.29 7.95 -52.49 -0.42 1.88 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -33.27 344.07 -8.47 -41.74 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.70 Total: 2.67 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -2.28 Total: -20.88 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.32 Total: -37.59 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -5.08 Total: 21.48 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.27 -8.47 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353340333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.694 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds