Wall clock time and date at job start Thu Apr 9 2020 13:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46897 * 2 1 4 4 C 1.46504 * 120.00397 * 270.00034 * 3 2 1 5 5 C 1.53003 * 109.47200 * 270.00763 * 4 3 2 6 6 C 1.34778 * 119.99911 * 90.00588 * 3 2 1 7 7 O 1.21283 * 119.99788 * 359.97438 * 6 3 2 8 8 C 1.50698 * 119.99943 * 179.97438 * 6 3 2 9 9 C 1.53001 * 109.47309 * 180.02562 * 8 6 3 10 10 H 1.09002 * 109.46683 * 305.97825 * 9 8 6 11 11 C 1.50701 * 109.46938 * 65.97575 * 9 8 6 12 12 H 1.07996 * 120.00200 * 26.91362 * 11 9 8 13 13 C 1.37882 * 119.99637 * 206.91188 * 11 9 8 14 14 N 1.31508 * 120.00298 * 353.28146 * 13 11 9 15 15 Si 1.86804 * 119.99594 * 173.55553 * 13 11 9 16 16 H 1.48507 * 109.47029 * 179.72580 * 15 13 11 17 17 H 1.48500 * 109.47296 * 299.72146 * 15 13 11 18 18 H 1.48501 * 109.47052 * 59.72587 * 15 13 11 19 19 C 1.50691 * 109.47347 * 185.97825 * 9 8 6 20 20 C 1.38237 * 120.00366 * 294.44456 * 19 9 8 21 21 C 1.38235 * 120.00426 * 179.79030 * 20 19 9 22 22 C 1.38236 * 119.99747 * 0.44087 * 21 20 19 23 23 C 1.38240 * 120.00193 * 359.81061 * 22 21 20 24 24 C 1.38235 * 120.00109 * 114.71927 * 19 9 8 25 25 H 1.09004 * 109.47112 * 299.99378 * 1 2 3 26 26 H 1.08993 * 109.47770 * 59.99481 * 1 2 3 27 27 H 1.09003 * 109.46873 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46881 * 240.00194 * 2 1 3 29 29 H 1.08999 * 109.47345 * 120.00591 * 2 1 3 30 30 H 1.09007 * 109.46536 * 30.00025 * 4 3 2 31 31 H 1.08999 * 109.47329 * 150.00310 * 4 3 2 32 32 H 1.09003 * 109.46666 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.46716 * 299.99742 * 5 4 3 34 34 H 1.08999 * 109.47349 * 59.99560 * 5 4 3 35 35 H 1.08998 * 109.46893 * 60.00147 * 8 6 3 36 36 H 1.09000 * 109.47344 * 300.00377 * 8 6 3 37 37 H 0.96999 * 120.00265 * 354.68917 * 14 13 11 38 38 H 1.08005 * 119.99617 * 359.97438 * 20 19 9 39 39 H 1.07995 * 119.99965 * 180.27799 * 21 20 19 40 40 H 1.07997 * 119.99991 * 179.83622 * 22 21 20 41 41 H 1.07993 * 120.00167 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00066 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8314 -1.7105 6 6 2.2430 2.0165 1.1672 7 8 2.0405 1.4448 2.2175 8 6 2.7458 3.4371 1.1672 9 6 2.9164 3.9178 2.6097 10 1 1.9831 3.7728 3.1538 11 6 4.0139 3.1284 3.2757 12 1 4.8073 2.6994 2.6817 13 6 4.0051 2.9540 4.6434 14 7 3.1169 3.5838 5.3809 15 14 5.2596 1.8289 5.4495 16 1 5.0431 1.8182 6.9187 17 1 5.1043 0.4517 4.9163 18 1 6.6288 2.3225 5.1546 19 6 3.2773 5.3808 2.6124 20 6 4.4837 5.7962 2.0803 21 6 4.8129 7.1388 2.0788 22 6 3.9396 8.0651 2.6176 23 6 2.7355 7.6493 3.1544 24 6 2.4045 6.3071 3.1520 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.5816 1.6877 -2.0284 31 1 2.0955 3.1411 -1.1383 32 1 3.8889 2.3450 -2.6547 33 1 4.3882 2.2155 -0.9508 34 1 3.8744 0.7622 -1.8409 35 1 2.0281 4.0765 0.6533 36 1 3.7061 3.4827 0.6535 37 1 2.5184 4.2294 4.9737 38 1 5.1678 5.0720 1.6631 39 1 5.7534 7.4637 1.6591 40 1 4.1979 9.1137 2.6189 41 1 2.0531 8.3729 3.5750 42 1 1.4638 5.9822 3.5713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353340333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:48 Heat of formation + Delta-G solvation = -43.903820 kcal Electronic energy + Delta-G solvation = -21874.154986 eV Core-core repulsion = 18817.777405 eV Total energy + Delta-G solvation = -3056.377581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01945 -39.90134 -37.16037 -36.09086 -33.58977 -32.78879 -31.61720 -30.77277 -29.88907 -27.07612 -25.02134 -24.40058 -23.53784 -23.12407 -21.58349 -19.77833 -18.77630 -18.10363 -17.27133 -17.13629 -16.62936 -15.75856 -15.66891 -15.58114 -14.92123 -14.78696 -14.71391 -14.55997 -14.06104 -13.97582 -13.69313 -13.48578 -13.43286 -13.13523 -12.96443 -12.71252 -12.64536 -12.53236 -12.09390 -11.98550 -11.92575 -11.90265 -11.71293 -11.48145 -10.73682 -10.55287 -10.34195 -9.65029 -9.57462 -9.27867 -8.45843 -6.12200 0.66957 0.72963 1.45516 1.56270 1.72177 1.87843 2.17667 2.60681 3.09865 3.34408 3.78031 4.08998 4.11944 4.20319 4.25444 4.28258 4.28790 4.37066 4.44362 4.49836 4.53307 4.56825 4.66123 4.74097 4.80498 4.84341 4.94259 4.96488 5.04255 5.11801 5.22071 5.26266 5.39204 5.39829 5.42271 5.73825 5.79613 5.81924 5.93854 6.23114 6.29869 6.39047 6.54892 6.76806 7.48261 7.62808 8.94393 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012826 B = 0.007234 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.583391 B = 3869.784738 C = 5087.752703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.108 3.892 3 N -0.621 5.621 4 C 0.101 3.899 5 C -0.168 4.168 6 C 0.509 3.491 7 O -0.563 6.563 8 C -0.105 4.105 9 C 0.075 3.925 10 H 0.001 0.999 11 C -0.555 4.555 12 H 0.036 0.964 13 C -0.026 4.026 14 N -0.943 5.943 15 Si 1.096 2.904 16 H -0.287 1.287 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.057 4.057 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.124 4.124 24 C -0.153 4.153 25 H 0.023 0.977 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.260 0.740 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.136 0.864 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 1.743 -17.224 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.014 4.014 3 N -0.356 5.356 4 C -0.020 4.020 5 C -0.226 4.226 6 C 0.298 3.702 7 O -0.440 6.440 8 C -0.145 4.145 9 C 0.056 3.944 10 H 0.019 0.981 11 C -0.593 4.593 12 H 0.055 0.945 13 C -0.225 4.225 14 N -0.581 5.581 15 Si 0.921 3.079 16 H -0.213 1.213 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.058 4.058 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.161 4.161 23 C -0.142 4.142 24 C -0.172 4.172 25 H 0.042 0.958 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.124 0.876 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.070 0.930 38 H 0.130 0.870 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.153 0.847 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.177 0.774 -15.227 15.248 hybrid contribution -0.715 0.334 -0.777 1.108 sum -0.892 1.108 -16.004 16.067 Atomic orbital electron populations 1.22050 0.95345 1.02817 1.01299 1.21436 0.94871 0.82438 1.02700 1.48249 1.66590 1.14556 1.06246 1.21785 0.97834 0.98027 0.84394 1.22188 0.95937 1.02487 1.01963 1.21034 0.76589 0.89434 0.83160 1.90708 1.51774 1.68484 1.33069 1.21561 1.01744 0.92119 0.99043 1.17680 0.95840 0.88786 0.92084 0.98104 1.21752 1.09605 1.33899 0.94004 0.94523 1.26748 1.00492 0.99314 0.95900 1.70809 1.21221 1.26688 1.39424 0.83219 0.74548 0.74872 0.75273 1.21321 1.21330 1.19050 1.20629 0.94382 0.96144 0.94614 1.20985 0.95898 0.96144 1.00941 1.21404 1.00225 0.92532 0.99971 1.21315 0.94227 1.00473 1.00078 1.21297 0.98108 0.94856 0.99919 1.21123 0.99608 0.94348 1.02088 0.95818 0.90806 0.89994 0.87575 0.93426 0.87641 0.90120 0.89025 0.94438 0.92285 0.89500 0.88914 0.92954 0.87009 0.83877 0.83441 0.84655 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 10.24 71.98 0.74 -3.07 16 2 C 0.11 2.95 6.13 86.38 0.53 3.47 16 3 N -0.62 -19.18 2.47 -821.80 -2.03 -21.21 16 4 C 0.10 2.11 5.93 86.38 0.51 2.62 16 5 C -0.17 -3.21 10.24 71.98 0.74 -2.47 16 6 C 0.51 21.73 7.43 87.66 0.65 22.39 16 7 O -0.56 -30.78 14.60 -3.04 -0.04 -30.82 16 8 C -0.10 -4.27 3.51 29.85 0.10 -4.17 16 9 C 0.08 3.85 1.23 -12.29 -0.02 3.83 16 10 H 0.00 0.04 6.59 -2.39 -0.02 0.03 16 11 C -0.55 -31.86 6.35 25.60 0.16 -31.70 16 12 H 0.04 2.09 7.82 -2.91 -0.02 2.07 16 13 C -0.03 -1.60 5.45 84.66 0.46 -1.14 16 14 N -0.94 -61.45 13.56 21.45 0.29 -61.16 16 15 Si 1.10 55.25 29.91 68.60 2.05 57.30 16 16 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 17 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 C -0.06 -2.62 4.53 -19.87 -0.09 -2.71 16 20 C -0.12 -4.91 8.90 22.27 0.20 -4.71 16 21 C -0.12 -4.07 10.05 22.27 0.22 -3.85 16 22 C -0.14 -4.45 10.05 22.27 0.22 -4.22 16 23 C -0.12 -4.34 10.05 22.27 0.22 -4.12 16 24 C -0.15 -6.62 9.18 22.27 0.20 -6.42 16 25 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.11 2.06 8.07 -2.39 -0.02 2.04 16 29 H 0.05 1.63 7.42 -2.39 -0.02 1.61 16 30 H 0.11 1.53 8.07 -2.38 -0.02 1.51 16 31 H 0.08 1.66 6.44 -2.39 -0.02 1.64 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.04 0.91 7.22 -2.39 -0.02 0.89 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 3.07 7.40 -2.39 -0.02 3.05 16 36 H 0.09 3.49 7.01 -2.39 -0.02 3.47 16 37 H 0.26 16.95 6.24 -92.71 -0.58 16.37 16 38 H 0.11 4.46 7.85 -2.91 -0.02 4.44 16 39 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 40 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 41 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.09 4.22 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -78.92 344.07 6.30 -72.63 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.17 Total: 19.53 kcal Atomic # 6 Polarization: -41.12 SS G_CDS: 4.86 Total: -36.26 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -1.74 Total: -82.37 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.04 Total: -30.82 kcal Atomic # 14 Polarization: 55.25 SS G_CDS: 2.05 Total: 57.30 kcal Total: -78.92 6.30 -72.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353340333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.724 kcal (2) G-P(sol) polarization free energy of solvation -78.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds