Wall clock time and date at job start Thu Apr 9 2020 13:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47378 * 2 1 4 4 C 1.46502 * 120.00094 * 89.99570 * 3 2 1 5 5 C 1.50697 * 109.46596 * 85.20748 * 4 3 2 6 6 C 1.38256 * 120.00376 * 5.33905 * 5 4 3 7 7 C 1.38212 * 119.99955 * 179.97438 * 6 5 4 8 8 C 1.38260 * 120.00170 * 0.02562 * 7 6 5 9 9 C 1.38211 * 119.99954 * 359.97438 * 8 7 6 10 10 C 1.38218 * 119.99742 * 185.05965 * 5 4 3 11 11 C 1.50697 * 120.00072 * 0.02562 * 10 5 4 12 12 C 1.34776 * 119.99670 * 270.00451 * 3 2 1 13 13 O 1.21289 * 119.99438 * 185.11890 * 12 3 2 14 14 C 1.50698 * 120.00314 * 5.11386 * 12 3 2 15 15 C 1.53000 * 109.47206 * 180.02562 * 14 12 3 16 16 C 1.50698 * 109.47206 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00091 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00061 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00270 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 120.00328 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46922 * 59.99758 * 20 18 16 22 22 H 1.48500 * 109.47333 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46696 * 300.00325 * 20 18 16 24 24 H 1.08994 * 109.47209 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47417 * 300.00601 * 1 2 3 26 26 H 1.09003 * 109.46850 * 59.99710 * 1 2 3 27 27 H 1.09000 * 109.47466 * 239.99910 * 2 1 3 28 28 H 1.08997 * 109.46933 * 119.99842 * 2 1 3 29 29 H 1.09002 * 109.46832 * 205.20983 * 4 3 2 30 30 H 1.08993 * 109.47003 * 325.20931 * 4 3 2 31 31 H 1.07994 * 120.00076 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.99837 * 179.97438 * 7 6 5 33 33 H 1.07994 * 119.99990 * 179.97438 * 8 7 6 34 34 H 1.07997 * 120.00228 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47402 * 84.66379 * 11 10 5 36 36 H 1.09002 * 109.47483 * 204.67166 * 11 10 5 37 37 H 1.09004 * 109.47104 * 324.66539 * 11 10 5 38 38 H 1.09000 * 109.46842 * 300.00033 * 14 12 3 39 39 H 1.09001 * 109.47135 * 60.00234 * 14 12 3 40 40 H 1.09007 * 109.46882 * 300.00204 * 15 14 12 41 41 H 1.09001 * 109.47324 * 59.99809 * 15 14 12 42 42 H 0.97002 * 120.00085 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6468 1.7397 1.7631 6 6 4.4990 0.9859 0.9777 7 6 5.7688 0.6817 1.4309 8 6 6.1865 1.1308 2.6700 9 6 5.3346 1.8844 3.4552 10 6 4.0664 2.1935 2.9994 11 6 3.1396 3.0200 3.8531 12 6 2.2429 2.0165 -1.1672 13 8 2.7344 3.1254 -1.1693 14 6 1.8834 1.3492 -2.4697 15 6 2.2386 2.2771 -3.6332 16 6 1.8797 1.6095 -4.9357 17 1 1.4417 0.6223 -4.9339 18 6 2.1095 2.2594 -6.1297 19 7 2.6415 3.4622 -6.1321 20 14 1.6640 1.4322 -7.7444 21 1 0.2074 1.1438 -7.7674 22 1 2.0088 2.3328 -8.8736 23 1 2.4222 0.1620 -7.8754 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 2.1788 3.1482 1.1184 30 1 1.5266 1.7496 2.0053 31 1 4.1726 0.6348 0.0100 32 1 6.4344 0.0925 0.8175 33 1 7.1785 0.8928 3.0244 34 1 5.6607 2.2348 4.4233 35 1 2.4888 2.3601 4.4268 36 1 3.7259 3.6353 4.5355 37 1 2.5334 3.6625 3.2144 38 1 2.4400 0.4169 -2.5660 39 1 0.8143 1.1375 -2.4866 40 1 1.6824 3.2096 -3.5371 41 1 3.3078 2.4884 -3.6162 42 1 2.8036 3.9193 -6.9722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360001488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:52 Heat of formation + Delta-G solvation = -27.462455 kcal Electronic energy + Delta-G solvation = -21211.778690 eV Core-core repulsion = 18156.114060 eV Total energy + Delta-G solvation = -3055.664630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.14478 -38.80614 -35.75549 -33.58802 -33.10496 -32.01328 -30.75583 -29.83983 -27.37599 -26.46496 -25.13326 -23.23941 -22.17951 -21.29233 -20.57346 -18.44339 -17.01078 -16.57267 -16.19233 -15.74010 -15.08029 -14.87056 -14.55879 -14.34816 -14.09318 -13.69435 -13.46486 -13.23262 -13.05435 -12.72773 -12.42683 -12.34336 -12.14966 -12.02665 -11.92262 -11.69726 -11.14832 -11.05189 -11.00973 -10.97462 -10.86570 -10.59870 -9.90165 -9.61654 -9.16220 -8.98416 -8.73972 -8.54496 -8.49254 -8.30100 -5.94499 -3.99101 1.36330 1.43897 3.22031 3.26476 3.35061 3.39970 3.41696 3.77897 4.47950 4.76612 4.80968 4.94183 4.95765 5.09005 5.11725 5.23208 5.28825 5.40134 5.41320 5.47090 5.49941 5.54709 5.69069 5.73025 5.78051 5.81108 5.86323 6.07892 6.12622 6.16140 6.23546 6.30099 6.48662 6.54332 6.57954 6.86443 6.93337 7.04942 7.73997 7.75806 7.87741 8.08741 8.39889 8.75802 9.09228 9.64356 11.16364 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.003965 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.090560 B = 7060.478470 C = 7456.137047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 N -0.625 5.625 4 C 0.155 3.845 5 C -0.094 4.094 6 C -0.098 4.098 7 C -0.124 4.124 8 C -0.124 4.124 9 C -0.122 4.122 10 C -0.087 4.087 11 C -0.116 4.116 12 C 0.510 3.490 13 O -0.527 6.527 14 C -0.128 4.128 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 -7.545 20.691 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.016 4.016 3 N -0.360 5.360 4 C 0.032 3.968 5 C -0.095 4.095 6 C -0.116 4.116 7 C -0.142 4.142 8 C -0.142 4.142 9 C -0.141 4.141 10 C -0.087 4.087 11 C -0.172 4.172 12 C 0.301 3.699 13 O -0.402 6.402 14 C -0.168 4.168 15 C 0.000 4.000 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.586 -6.776 20.540 21.637 hybrid contribution -0.126 -0.515 -0.907 1.050 sum 0.459 -7.291 19.633 20.948 Atomic orbital electron populations 1.22223 0.96042 1.02090 1.02699 1.21519 0.94412 0.82557 1.03104 1.48170 1.67739 1.14466 1.05620 1.20236 0.92305 0.98890 0.85344 1.20219 0.97113 0.98184 0.94032 1.21057 0.93465 0.97597 0.99455 1.21152 0.96253 1.00564 0.96259 1.21082 0.99409 0.98826 0.94917 1.20942 0.93680 0.99689 0.99741 1.19656 0.95340 0.99007 0.94711 1.20803 0.98594 0.98859 0.98969 1.21618 0.76670 0.86119 0.85529 1.90677 1.42106 1.20302 1.87104 1.21919 1.01858 1.01042 0.91968 1.18901 0.97831 0.93902 0.89402 1.21174 1.41769 1.02467 0.91138 0.92693 1.25019 0.95246 0.94877 0.99165 1.69993 1.43398 1.12768 1.26653 0.86666 0.78845 0.79270 0.83221 1.20252 1.21290 1.20259 0.91716 0.92727 0.91674 0.89835 0.90884 0.88597 0.90023 0.85943 0.86260 0.86420 0.86369 0.91256 0.91651 0.91269 0.90420 0.90153 0.95894 0.95900 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 10.23 37.16 0.38 -1.36 16 2 C 0.11 1.21 5.38 -4.04 -0.02 1.18 16 3 N -0.62 -9.13 1.31 -175.06 -0.23 -9.36 16 4 C 0.16 2.06 4.53 -5.19 -0.02 2.03 16 5 C -0.09 -1.28 5.87 -104.62 -0.61 -1.89 16 6 C -0.10 -1.40 9.14 -39.58 -0.36 -1.76 16 7 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 8 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 9 C -0.12 -1.36 9.68 -39.58 -0.38 -1.75 16 10 C -0.09 -1.03 5.88 -104.62 -0.62 -1.64 16 11 C -0.12 -1.04 9.43 36.00 0.34 -0.70 16 12 C 0.51 9.97 7.05 -10.99 -0.08 9.89 16 13 O -0.53 -12.61 15.54 5.55 0.09 -12.53 16 14 C -0.13 -2.62 4.31 -27.88 -0.12 -2.74 16 15 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 16 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.58 13.29 55.43 0.74 -26.84 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.77 6.94 -51.93 -0.36 0.41 16 27 H 0.08 0.94 6.48 -51.93 -0.34 0.61 16 28 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 29 H 0.10 1.44 6.97 -51.93 -0.36 1.08 16 30 H 0.08 0.85 7.98 -51.93 -0.41 0.44 16 31 H 0.12 1.87 6.21 -52.49 -0.33 1.55 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 37 H 0.07 0.64 7.00 -51.93 -0.36 0.27 16 38 H 0.08 1.45 7.25 -51.93 -0.38 1.08 16 39 H 0.08 1.51 6.93 -51.93 -0.36 1.15 16 40 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -34.07 344.16 -8.72 -42.79 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.66 Total: -0.60 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.82 Total: -15.35 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.51 Total: -36.20 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.07 -8.72 -42.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360001488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.330 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds