Wall clock time and date at job start Thu Apr 9 2020 13:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99547 * 2 1 4 4 C 1.38642 * 119.95510 * 359.97050 * 3 2 1 5 5 C 1.38120 * 119.87253 * 180.02562 * 4 3 2 6 6 C 1.38172 * 119.99878 * 359.97438 * 5 4 3 7 7 C 1.38499 * 120.33310 * 0.05386 * 6 5 4 8 8 C 1.38166 * 119.87846 * 359.94946 * 7 6 5 9 9 C 1.51368 * 109.77944 * 179.97438 * 8 7 6 10 10 C 1.54351 * 105.16153 * 17.18372 * 9 8 7 11 11 C 1.51374 * 130.36832 * 179.97438 * 7 6 5 12 12 H 1.09005 * 110.30167 * 281.86412 * 11 7 6 13 13 N 1.46905 * 110.30151 * 43.91225 * 11 7 6 14 14 C 1.46902 * 110.99800 * 273.54601 * 13 11 7 15 15 C 1.53006 * 109.46626 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46957 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00340 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00296 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99310 * 21 19 17 23 23 H 1.48494 * 109.47201 * 209.99478 * 21 19 17 24 24 H 1.48498 * 109.47011 * 329.99452 * 21 19 17 25 25 H 1.08997 * 109.47173 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47550 * 300.00558 * 1 2 3 27 27 H 1.09001 * 109.47219 * 60.00820 * 1 2 3 28 28 H 1.08002 * 120.06362 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.99831 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.83610 * 180.02562 * 6 5 4 31 31 H 1.08998 * 110.30330 * 136.10773 * 9 8 7 32 32 H 1.09004 * 110.30474 * 258.26401 * 9 8 7 33 33 H 1.09000 * 110.82071 * 215.44019 * 10 9 8 34 34 H 1.09002 * 110.81904 * 91.88573 * 10 9 8 35 35 H 1.00891 * 110.99988 * 37.50016 * 13 11 7 36 36 H 1.09000 * 109.47263 * 60.00269 * 14 13 11 37 37 H 1.09001 * 109.47582 * 299.99548 * 14 13 11 38 38 H 1.08993 * 109.46955 * 300.00347 * 15 14 13 39 39 H 1.09000 * 109.47050 * 60.00176 * 15 14 13 40 40 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 41 41 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 42 42 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3730 -0.0006 5 6 1.9185 3.6028 -0.0012 6 6 3.2984 3.6732 -0.0005 7 6 4.0579 2.5150 -0.0005 8 6 3.4335 1.2825 0.0000 9 6 4.4726 0.1819 -0.0007 10 6 5.7849 0.8654 0.4385 11 6 5.5600 2.3276 -0.0004 12 1 5.9613 2.4893 -1.0009 13 7 6.1886 3.2493 0.9552 14 6 6.4552 4.5526 0.3319 15 6 7.1079 5.4835 1.3559 16 6 7.3861 6.8407 0.7066 17 6 8.0296 7.7574 1.7149 18 1 8.2213 7.4070 2.7183 19 6 8.3736 9.0436 1.3564 20 7 8.1406 9.4702 0.1344 21 14 9.1718 10.1797 2.6060 22 1 10.6478 10.0312 2.5381 23 1 8.8014 11.5857 2.3044 24 1 8.7009 9.8253 3.9690 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 0.2112 2.3168 -0.0015 29 1 1.3315 4.5094 -0.0012 30 1 3.7873 4.6363 -0.0005 31 1 4.1970 -0.5988 0.7082 32 1 4.5803 -0.2359 -1.0017 33 1 6.6400 0.4319 -0.0802 34 1 5.9124 0.8012 1.5191 35 1 5.6217 3.3537 1.7832 36 1 5.5175 4.9902 -0.0105 37 1 7.1254 4.4190 -0.5172 38 1 6.4374 5.6170 2.2048 39 1 8.0456 5.0461 1.6987 40 1 8.0568 6.7068 -0.1421 41 1 6.4487 7.2783 0.3634 42 1 8.3829 10.3749 -0.1180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361125104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:53 Heat of formation + Delta-G solvation = -28.034255 kcal Electronic energy + Delta-G solvation = -20622.663196 eV Core-core repulsion = 17566.973771 eV Total energy + Delta-G solvation = -3055.689425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75315 -38.71321 -36.16044 -34.94169 -33.14831 -31.19246 -29.78815 -29.32958 -27.30411 -26.92614 -24.93849 -22.54327 -22.28687 -21.12672 -20.75085 -19.84608 -17.81030 -16.50254 -16.32916 -16.06525 -15.83833 -15.25085 -15.18768 -14.45192 -14.41773 -13.98708 -13.73258 -13.30432 -12.84770 -12.71177 -12.39070 -12.19350 -12.06350 -11.81153 -11.51976 -11.41833 -11.29559 -11.19783 -10.99312 -10.82252 -10.81362 -10.54706 -10.43482 -9.67203 -9.30504 -9.02218 -8.83605 -8.31688 -8.25245 -8.06701 -5.96959 -3.98844 1.18635 1.35134 3.09069 3.34288 3.40207 3.43944 3.61516 4.27579 4.37751 4.49238 4.63399 4.75117 4.85755 4.86198 4.99406 5.11537 5.15298 5.18667 5.29664 5.38893 5.44343 5.56121 5.68577 5.75232 5.84968 5.88792 5.97190 6.04816 6.14341 6.23107 6.31431 6.45258 6.51073 6.66522 6.75769 6.81370 7.16994 7.22589 7.36250 7.64847 7.71891 7.86975 8.03753 8.47190 9.08463 9.65034 11.14516 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.003094 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.525512 B = 9047.982300 C = 9622.278126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.133 3.867 4 C -0.209 4.209 5 C -0.081 4.081 6 C -0.138 4.138 7 C -0.087 4.087 8 C -0.124 4.124 9 C -0.072 4.072 10 C -0.106 4.106 11 C 0.124 3.876 12 H 0.094 0.906 13 N -0.677 5.677 14 C 0.054 3.946 15 C -0.107 4.107 16 C 0.023 3.977 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.341 0.659 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.016 0.984 41 H 0.013 0.987 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.810 -19.598 -1.701 24.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.088 3.912 4 C -0.228 4.228 5 C -0.099 4.099 6 C -0.157 4.157 7 C -0.089 4.089 8 C -0.126 4.126 9 C -0.109 4.109 10 C -0.144 4.144 11 C 0.014 3.986 12 H 0.112 0.888 13 N -0.306 5.306 14 C -0.074 4.074 15 C -0.145 4.145 16 C -0.015 4.015 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.159 0.841 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.044 -19.865 -1.919 24.404 hybrid contribution -0.955 1.397 0.496 1.764 sum -14.999 -18.468 -1.422 23.834 Atomic orbital electron populations 1.23024 0.78766 1.03716 1.01265 1.86070 1.21039 1.27137 1.88890 1.18607 0.90789 0.84171 0.97656 1.21105 0.99706 0.92263 1.09735 1.20864 0.94332 0.97027 0.97707 1.20819 0.93519 0.98194 1.03151 1.21390 0.97658 0.92426 0.97412 1.19830 0.90379 0.96647 1.05696 1.20924 0.92183 0.95897 1.01902 1.22331 0.96561 0.93215 1.02332 1.21230 0.86267 0.93714 0.97420 0.88819 1.60743 1.49806 1.12372 1.07699 1.22277 0.98946 0.87746 0.98474 1.21626 0.99382 0.96575 0.96935 1.19059 0.96653 0.89809 0.95988 1.21266 1.39464 0.97140 0.97763 0.92683 1.25029 0.96017 0.98223 0.95273 1.69965 1.48124 1.17645 1.17923 0.86600 0.79697 0.80010 0.81743 1.20655 1.21282 1.19891 0.88408 0.92760 0.92792 0.85503 0.85539 0.85444 0.90796 0.90499 0.90212 0.90210 0.84093 0.95329 0.91421 0.93681 0.92542 0.96599 0.96846 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.51 10.44 -19.43 -0.20 -3.72 16 3 C 0.13 1.62 6.69 -39.17 -0.26 1.36 16 4 C -0.21 -2.34 9.03 -39.48 -0.36 -2.69 16 5 C -0.08 -0.97 10.04 -39.65 -0.40 -1.36 16 6 C -0.14 -1.87 9.68 -39.51 -0.38 -2.25 16 7 C -0.09 -1.16 5.52 -104.22 -0.58 -1.73 16 8 C -0.12 -1.58 6.11 -104.06 -0.64 -2.22 16 9 C -0.07 -0.77 6.71 -26.85 -0.18 -0.95 16 10 C -0.11 -1.16 6.77 -25.34 -0.17 -1.33 16 11 C 0.12 1.61 3.18 -67.85 -0.22 1.40 16 12 H 0.09 1.24 7.86 -51.93 -0.41 0.83 16 13 N -0.68 -10.05 6.26 -106.86 -0.67 -10.72 16 14 C 0.05 0.93 5.46 -3.82 -0.02 0.91 16 15 C -0.11 -2.24 5.41 -26.73 -0.14 -2.39 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 18 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 21 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.13 1.09 6.29 -52.49 -0.33 0.76 16 29 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.13 1.80 5.86 -52.49 -0.31 1.49 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.34 4.99 8.48 -39.30 -0.33 4.66 16 36 H 0.03 0.49 5.64 -51.93 -0.29 0.20 16 37 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -31.46 339.64 -9.59 -41.05 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.65 Total: 1.24 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -2.90 Total: -23.33 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.07 Total: -37.28 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.20 Total: -3.72 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.46 -9.59 -41.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361125104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.015 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds