Wall clock time and date at job start Thu Apr 9 2020 13:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99547 * 2 1 4 4 C 1.38642 * 119.95510 * 359.97050 * 3 2 1 5 5 C 1.38120 * 119.87253 * 180.02562 * 4 3 2 6 6 C 1.38172 * 119.99878 * 359.97438 * 5 4 3 7 7 C 1.38499 * 120.33310 * 0.05386 * 6 5 4 8 8 C 1.38166 * 119.87846 * 359.94946 * 7 6 5 9 9 C 1.51368 * 109.77944 * 179.97438 * 8 7 6 10 10 C 1.54351 * 105.16153 * 17.18372 * 9 8 7 11 11 C 1.51374 * 130.36832 * 179.97438 * 7 6 5 12 12 H 1.09005 * 110.30167 * 281.86412 * 11 7 6 13 13 N 1.46905 * 110.30151 * 43.91225 * 11 7 6 14 14 C 1.46902 * 110.99800 * 273.54601 * 13 11 7 15 15 C 1.53006 * 109.46626 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46957 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00340 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00296 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99310 * 21 19 17 23 23 H 1.48494 * 109.47201 * 209.99478 * 21 19 17 24 24 H 1.48498 * 109.47011 * 329.99452 * 21 19 17 25 25 H 1.08997 * 109.47173 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47550 * 300.00558 * 1 2 3 27 27 H 1.09001 * 109.47219 * 60.00820 * 1 2 3 28 28 H 1.08002 * 120.06362 * 359.97438 * 4 3 2 29 29 H 1.08005 * 119.99831 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.83610 * 180.02562 * 6 5 4 31 31 H 1.08998 * 110.30330 * 136.10773 * 9 8 7 32 32 H 1.09004 * 110.30474 * 258.26401 * 9 8 7 33 33 H 1.09000 * 110.82071 * 215.44019 * 10 9 8 34 34 H 1.09002 * 110.81904 * 91.88573 * 10 9 8 35 35 H 1.00891 * 110.99988 * 37.50016 * 13 11 7 36 36 H 1.09000 * 109.47263 * 60.00269 * 14 13 11 37 37 H 1.09001 * 109.47582 * 299.99548 * 14 13 11 38 38 H 1.08993 * 109.46955 * 300.00347 * 15 14 13 39 39 H 1.09000 * 109.47050 * 60.00176 * 15 14 13 40 40 H 1.08993 * 109.47839 * 299.99931 * 16 15 14 41 41 H 1.09000 * 109.47160 * 60.00369 * 16 15 14 42 42 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2898 2.3730 -0.0006 5 6 1.9185 3.6028 -0.0012 6 6 3.2984 3.6732 -0.0005 7 6 4.0579 2.5150 -0.0005 8 6 3.4335 1.2825 0.0000 9 6 4.4726 0.1819 -0.0007 10 6 5.7849 0.8654 0.4385 11 6 5.5600 2.3276 -0.0004 12 1 5.9613 2.4893 -1.0009 13 7 6.1886 3.2493 0.9552 14 6 6.4552 4.5526 0.3319 15 6 7.1079 5.4835 1.3559 16 6 7.3861 6.8407 0.7066 17 6 8.0296 7.7574 1.7149 18 1 8.2213 7.4070 2.7183 19 6 8.3736 9.0436 1.3564 20 7 8.1406 9.4702 0.1344 21 14 9.1718 10.1797 2.6060 22 1 10.6478 10.0312 2.5381 23 1 8.8014 11.5857 2.3044 24 1 8.7009 9.8253 3.9690 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 0.2112 2.3168 -0.0015 29 1 1.3315 4.5094 -0.0012 30 1 3.7873 4.6363 -0.0005 31 1 4.1970 -0.5988 0.7082 32 1 4.5803 -0.2359 -1.0017 33 1 6.6400 0.4319 -0.0802 34 1 5.9124 0.8012 1.5191 35 1 5.6217 3.3537 1.7832 36 1 5.5175 4.9902 -0.0105 37 1 7.1254 4.4190 -0.5172 38 1 6.4374 5.6170 2.2048 39 1 8.0456 5.0461 1.6987 40 1 8.0568 6.7068 -0.1421 41 1 6.4487 7.2783 0.3634 42 1 8.3829 10.3749 -0.1180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361125104.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:53 Heat of formation + Delta-G solvation = -46.686038 kcal Electronic energy + Delta-G solvation = -20623.471998 eV Core-core repulsion = 17566.973771 eV Total energy + Delta-G solvation = -3056.498227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65115 -39.59072 -37.34299 -36.24182 -34.98202 -32.86119 -30.87408 -30.21338 -28.48554 -27.96951 -26.41018 -24.08311 -23.36681 -22.25864 -21.92336 -21.18777 -18.73668 -18.44877 -17.34588 -17.08977 -16.73237 -16.53898 -16.32337 -16.10475 -15.42585 -15.21024 -15.00744 -14.32608 -14.27749 -13.86498 -13.60958 -13.54388 -13.35206 -12.92518 -12.79794 -12.66053 -12.57247 -12.45814 -12.36412 -12.10243 -12.07213 -11.82577 -11.71312 -11.53335 -11.36191 -11.04273 -10.55121 -9.82840 -9.27537 -9.12195 -8.19936 -6.30923 0.26012 0.40772 1.40008 1.41621 1.52757 2.37392 2.41204 2.67442 3.13107 3.19862 3.43246 3.66859 3.96881 4.03716 4.12278 4.17668 4.28304 4.35600 4.38870 4.41163 4.47902 4.56082 4.62061 4.72187 4.75615 4.81150 4.87504 4.99324 5.08522 5.09137 5.19007 5.24695 5.27451 5.35131 5.45787 5.52797 5.56668 5.75544 5.76065 5.86342 6.05788 6.27478 6.40650 6.44443 6.86014 7.38266 8.92049 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.003094 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.525512 B = 9047.982300 C = 9622.278126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.126 3.874 4 C -0.207 4.207 5 C -0.086 4.086 6 C -0.160 4.160 7 C -0.100 4.100 8 C -0.139 4.139 9 C -0.066 4.066 10 C -0.098 4.098 11 C 0.122 3.878 12 H 0.089 0.911 13 N -0.673 5.673 14 C 0.068 3.932 15 C -0.092 4.092 16 C 0.027 3.973 17 C -0.543 4.543 18 H 0.059 0.941 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.263 1.263 25 H 0.120 0.880 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.154 0.846 29 H 0.143 0.857 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.343 0.657 36 H 0.027 0.973 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.053 0.947 40 H -0.009 1.009 41 H -0.010 1.010 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.642 -20.768 -0.770 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.081 3.919 4 C -0.226 4.226 5 C -0.104 4.104 6 C -0.178 4.178 7 C -0.102 4.102 8 C -0.140 4.140 9 C -0.103 4.103 10 C -0.136 4.136 11 C 0.012 3.988 12 H 0.107 0.893 13 N -0.302 5.302 14 C -0.061 4.061 15 C -0.130 4.130 16 C -0.011 4.011 17 C -0.581 4.581 18 H 0.077 0.923 19 C -0.199 4.199 20 N -0.575 5.575 21 Si 0.790 3.210 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.188 1.188 25 H 0.138 0.862 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.171 0.829 29 H 0.161 0.839 30 H 0.130 0.870 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.161 0.839 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.010 0.990 41 H 0.009 0.991 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.888 -21.061 -0.984 25.811 hybrid contribution -0.799 1.712 0.165 1.896 sum -15.687 -19.349 -0.819 24.923 Atomic orbital electron populations 1.23338 0.76636 1.05578 1.02130 1.86054 1.23263 1.26525 1.88634 1.18784 0.90933 0.85010 0.97195 1.21398 1.01082 0.91540 1.08546 1.21104 0.93849 0.98250 0.97229 1.20852 0.94519 0.97689 1.04773 1.21399 0.97683 0.92829 0.98306 1.20107 0.91263 0.96885 1.05744 1.20924 0.91283 0.95457 1.02647 1.22304 0.97382 0.91531 1.02409 1.21316 0.86259 0.94424 0.96770 0.89282 1.60698 1.50489 1.10957 1.08069 1.21978 0.98425 0.88530 0.97200 1.21369 0.99642 0.94524 0.97428 1.18954 0.94680 0.92343 0.95120 1.21705 1.39878 0.98100 0.98399 0.92285 1.25995 0.96479 1.00043 0.97405 1.70097 1.49064 1.18292 1.19999 0.85441 0.78797 0.77579 0.79209 1.19714 1.20656 1.18761 0.86212 0.91881 0.91847 0.82850 0.83880 0.86983 0.90016 0.89537 0.88765 0.90295 0.83879 0.95471 0.91901 0.93333 0.92796 0.99049 0.99122 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.64 10.44 -92.44 -0.97 -7.61 16 3 C 0.13 2.90 6.69 22.54 0.15 3.05 16 4 C -0.21 -4.28 9.03 22.34 0.20 -4.08 16 5 C -0.09 -1.99 10.04 22.23 0.22 -1.77 16 6 C -0.16 -4.36 9.68 22.32 0.22 -4.15 16 7 C -0.10 -2.66 5.52 -19.60 -0.11 -2.77 16 8 C -0.14 -3.39 6.11 -19.50 -0.12 -3.51 16 9 C -0.07 -1.31 6.71 30.52 0.20 -1.10 16 10 C -0.10 -2.01 6.77 31.50 0.21 -1.80 16 11 C 0.12 3.14 3.18 44.83 0.14 3.28 16 12 H 0.09 2.35 7.86 -2.38 -0.02 2.33 16 13 N -0.67 -19.89 6.26 -491.99 -3.08 -22.97 16 14 C 0.07 2.39 5.46 86.31 0.47 2.87 16 15 C -0.09 -3.90 5.41 30.60 0.17 -3.74 16 16 C 0.03 1.44 4.97 29.85 0.15 1.59 16 17 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 18 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 19 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 20 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 21 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 25 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 27 H 0.06 0.59 7.66 -2.39 -0.02 0.58 16 28 H 0.15 2.23 6.29 -2.91 -0.02 2.21 16 29 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 30 H 0.11 3.32 5.86 -2.91 -0.02 3.30 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 35 H 0.34 9.97 8.48 -89.70 -0.76 9.21 16 36 H 0.03 0.97 5.64 -2.39 -0.01 0.96 16 37 H 0.06 2.28 8.07 -2.39 -0.02 2.26 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 42 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -67.75 339.64 2.23 -65.53 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.24 Total: 17.49 kcal Atomic # 6 Polarization: -45.64 SS G_CDS: 3.72 Total: -41.92 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -2.80 Total: -80.52 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.97 Total: -7.61 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -67.75 2.23 -65.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361125104.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.840 kcal (2) G-P(sol) polarization free energy of solvation -67.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds