Wall clock time and date at job start Thu Apr 9 2020 13:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47383 * 2 1 4 4 C 1.34771 * 119.99933 * 88.11990 * 3 2 1 5 5 O 1.21281 * 120.00338 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.99884 * 359.97438 * 4 3 2 7 7 C 1.53001 * 109.47423 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47762 * 180.02562 * 7 6 4 9 9 H 1.08006 * 119.99473 * 0.02562 * 8 7 6 10 10 C 1.37868 * 120.00244 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99974 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00189 * 0.02562 * 10 8 7 13 13 H 1.48509 * 109.46829 * 89.99864 * 12 10 8 14 14 H 1.48502 * 109.47293 * 209.99474 * 12 10 8 15 15 H 1.48496 * 109.47176 * 329.99987 * 12 10 8 16 16 C 1.39922 * 120.00196 * 268.11819 * 3 2 1 17 17 C 1.38898 * 120.07142 * 94.05597 * 16 3 2 18 18 C 1.38093 * 119.93003 * 180.02562 * 17 16 3 19 19 C 1.50690 * 119.96304 * 179.97438 * 18 17 16 20 20 C 1.38305 * 120.07045 * 0.02562 * 18 17 16 21 21 C 1.38263 * 120.14318 * 359.97438 * 20 18 17 22 22 C 1.38140 * 120.06738 * 359.72488 * 21 20 18 23 23 C 1.50702 * 120.03628 * 180.27435 * 22 21 20 24 24 H 1.09003 * 109.47189 * 179.66286 * 1 2 3 25 25 H 1.09001 * 109.47135 * 299.66249 * 1 2 3 26 26 H 1.08999 * 109.47199 * 59.65983 * 1 2 3 27 27 H 1.09008 * 109.46745 * 240.00068 * 2 1 3 28 28 H 1.08998 * 109.47258 * 120.00264 * 2 1 3 29 29 H 1.08997 * 109.47658 * 300.00804 * 6 4 3 30 30 H 1.09001 * 109.47081 * 60.00861 * 6 4 3 31 31 H 1.08997 * 109.47385 * 300.01002 * 7 6 4 32 32 H 1.09003 * 109.46664 * 60.00041 * 7 6 4 33 33 H 0.97002 * 119.99943 * 180.02562 * 11 10 8 34 34 H 1.08004 * 120.03168 * 359.97438 * 17 16 3 35 35 H 1.09004 * 109.47185 * 90.00230 * 19 18 17 36 36 H 1.09006 * 109.47369 * 210.00336 * 19 18 17 37 37 H 1.09002 * 109.47361 * 329.99896 * 19 18 17 38 38 H 1.07992 * 119.93134 * 180.02562 * 20 18 17 39 39 H 1.07995 * 119.96788 * 180.02562 * 21 20 18 40 40 H 1.08998 * 109.47152 * 264.94753 * 23 22 21 41 41 H 1.09001 * 109.47077 * 24.94698 * 23 22 21 42 42 H 1.08999 * 109.47072 * 144.94478 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2069 2.0293 1.1665 5 8 2.6108 3.1728 1.1666 6 6 1.9148 1.3333 2.4709 7 6 2.2110 2.2830 3.6333 8 6 1.9195 1.5869 4.9377 9 1 1.5594 0.5687 4.9376 10 6 2.1124 2.2498 6.1310 11 7 1.8585 1.6421 7.2694 12 14 2.7346 4.0112 6.1311 13 1 1.5799 4.9440 6.0856 14 1 3.5219 4.2581 7.3658 15 1 3.5964 4.2318 4.9421 16 6 2.2891 2.0276 -1.2111 17 6 1.3172 2.8185 -1.8104 18 6 1.5874 3.4546 -3.0059 19 6 0.5334 4.3124 -3.6570 20 6 2.8240 3.3045 -3.6068 21 6 3.7937 2.5179 -3.0129 22 6 3.5318 1.8839 -1.8138 23 6 4.5913 1.0317 -1.1640 24 1 -0.3634 -1.0277 -0.0060 25 1 -0.3633 0.5086 0.8930 26 1 -0.3633 0.5191 -0.8869 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.8654 1.0399 2.4992 30 1 2.5425 0.4464 2.5580 31 1 3.2604 2.5760 3.6048 32 1 1.5837 3.1702 3.5464 33 1 1.9939 2.1086 8.1090 34 1 0.3510 2.9351 -1.3422 35 1 0.6277 5.3378 -3.2997 36 1 0.6648 4.2910 -4.7389 37 1 -0.4549 3.9287 -3.4035 38 1 3.0330 3.8033 -4.5415 39 1 4.7584 2.4029 -3.4843 40 1 4.4438 -0.0104 -1.4474 41 1 5.5762 1.3620 -1.4940 42 1 4.5202 1.1271 -0.0805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361505642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:57 Heat of formation + Delta-G solvation = -26.424607 kcal Electronic energy + Delta-G solvation = -21434.613840 eV Core-core repulsion = 18378.994215 eV Total energy + Delta-G solvation = -3055.619626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55820 -38.61114 -35.84465 -33.83660 -33.45954 -31.64283 -30.88739 -29.43252 -29.18886 -26.28745 -24.87051 -23.32561 -22.93553 -21.52688 -20.31199 -18.61843 -17.20878 -16.73241 -16.17466 -15.87874 -15.65491 -14.70162 -14.28202 -14.11527 -13.94305 -13.70481 -13.42084 -13.31890 -13.06961 -12.95786 -12.71033 -12.58739 -12.27325 -12.07584 -11.96853 -11.59793 -11.43578 -11.30361 -11.20266 -11.12550 -10.89229 -10.13944 -10.03863 -9.77615 -9.29801 -9.17844 -8.84913 -8.68679 -8.50600 -8.42360 -6.03170 -4.01893 1.23541 1.33452 3.04767 3.14084 3.38062 3.44694 3.56104 3.61967 4.51121 4.73702 4.76404 4.89691 4.95274 5.09136 5.13248 5.20138 5.22369 5.32386 5.41566 5.44229 5.47251 5.52270 5.59155 5.68744 5.70483 5.79782 5.85967 5.91993 6.02702 6.06896 6.17016 6.19760 6.32406 6.46275 6.59247 6.65711 6.69410 7.15939 7.36437 7.42697 7.55346 7.78814 8.49164 8.62647 8.99607 9.60097 11.09595 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021997 B = 0.004472 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.621342 B = 6258.997523 C = 6494.689556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.110 3.890 3 N -0.585 5.585 4 C 0.514 3.486 5 O -0.526 6.526 6 C -0.119 4.119 7 C 0.001 3.999 8 C -0.524 4.524 9 H 0.073 0.927 10 C 0.070 3.930 11 N -0.903 5.903 12 Si 0.876 3.124 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.261 1.261 16 C 0.153 3.847 17 C -0.106 4.106 18 C -0.089 4.089 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.085 4.085 23 C -0.110 4.110 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.023 0.977 32 H 0.018 0.982 33 H 0.263 0.737 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 -2.239 -23.641 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.012 4.012 3 N -0.318 5.318 4 C 0.305 3.695 5 O -0.400 6.400 6 C -0.158 4.158 7 C -0.037 4.037 8 C -0.562 4.562 9 H 0.091 0.909 10 C -0.131 4.131 11 N -0.542 5.542 12 Si 0.703 3.297 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.186 1.186 16 C 0.063 3.937 17 C -0.125 4.125 18 C -0.090 4.090 19 C -0.168 4.168 20 C -0.137 4.137 21 C -0.132 4.132 22 C -0.087 4.087 23 C -0.167 4.167 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.139 0.861 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.063 -1.601 -23.390 23.445 hybrid contribution 0.212 0.857 0.131 0.893 sum 0.149 -0.743 -23.259 23.271 Atomic orbital electron populations 1.22243 0.95763 1.02402 1.02782 1.21596 0.94657 0.81565 1.03381 1.45765 1.67817 1.14424 1.03812 1.21690 0.75892 0.86720 0.85212 1.90675 1.44158 1.18074 1.87117 1.21731 1.02874 1.00644 0.90598 1.19387 0.97508 0.94596 0.92191 1.21089 1.44964 1.01259 0.88861 0.90898 1.24953 0.94718 0.98003 0.95449 1.69913 1.49317 1.37512 0.97477 0.86821 0.79755 0.85400 0.77743 1.20236 1.21403 1.18555 1.17386 0.92703 0.96273 0.87339 1.21221 0.99349 0.96967 0.94998 1.19754 0.95595 0.98452 0.95150 1.20764 0.96944 0.99039 1.00074 1.20990 0.93132 0.99389 1.00188 1.20887 0.99355 0.97888 0.95026 1.20130 0.94394 0.98880 0.95267 1.20706 0.96380 0.98362 1.01263 0.91355 0.91626 0.92593 0.90702 0.89326 0.89440 0.89520 0.95856 0.96319 0.92718 0.86056 0.91160 0.91627 0.91631 0.86109 0.85895 0.91320 0.91653 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.21 37.16 0.38 -1.43 16 2 C 0.11 1.25 5.89 -4.04 -0.02 1.23 16 3 N -0.59 -8.79 1.63 -113.46 -0.19 -8.97 16 4 C 0.51 9.84 7.25 -10.99 -0.08 9.76 16 5 O -0.53 -12.28 15.95 5.56 0.09 -12.19 16 6 C -0.12 -2.34 4.22 -27.88 -0.12 -2.46 16 7 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 8 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 9 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 10 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 11 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 12 Si 0.88 22.78 27.47 -169.99 -4.67 18.11 16 13 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 15 H -0.26 -6.80 6.54 56.52 0.37 -6.43 16 16 C 0.15 2.26 4.43 -83.69 -0.37 1.89 16 17 C -0.11 -1.47 9.62 -39.39 -0.38 -1.85 16 18 C -0.09 -1.05 5.88 -104.66 -0.62 -1.67 16 19 C -0.11 -1.00 10.01 36.00 0.36 -0.64 16 20 C -0.12 -1.31 9.70 -39.55 -0.38 -1.69 16 21 C -0.11 -1.31 9.68 -39.61 -0.38 -1.69 16 22 C -0.09 -1.15 5.90 -104.43 -0.62 -1.76 16 23 C -0.11 -1.32 9.70 36.01 0.35 -0.97 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.78 6.99 -51.93 -0.36 0.42 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.72 8.03 -51.92 -0.42 0.30 16 28 H 0.09 0.97 6.52 -51.93 -0.34 0.63 16 29 H 0.09 1.59 6.93 -51.93 -0.36 1.23 16 30 H 0.09 1.56 7.40 -51.93 -0.38 1.18 16 31 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 32 H 0.02 0.49 7.52 -51.93 -0.39 0.10 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 37 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.68 8.05 -51.93 -0.42 0.27 16 42 H 0.07 0.99 7.30 -51.93 -0.38 0.61 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -34.30 345.82 -7.99 -42.29 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.81 Total: -2.53 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -2.40 Total: -14.68 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.59 Total: -36.21 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.67 Total: 18.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.30 -7.99 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361505642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.869 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds