Wall clock time and date at job start Thu Apr 9 2020 13:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47383 * 2 1 4 4 C 1.34771 * 119.99933 * 88.11990 * 3 2 1 5 5 O 1.21281 * 120.00338 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.99884 * 359.97438 * 4 3 2 7 7 C 1.53001 * 109.47423 * 179.97438 * 6 4 3 8 8 C 1.50698 * 109.47762 * 180.02562 * 7 6 4 9 9 H 1.08006 * 119.99473 * 0.02562 * 8 7 6 10 10 C 1.37868 * 120.00244 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99974 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00189 * 0.02562 * 10 8 7 13 13 H 1.48509 * 109.46829 * 89.99864 * 12 10 8 14 14 H 1.48502 * 109.47293 * 209.99474 * 12 10 8 15 15 H 1.48496 * 109.47176 * 329.99987 * 12 10 8 16 16 C 1.39922 * 120.00196 * 268.11819 * 3 2 1 17 17 C 1.38898 * 120.07142 * 94.05597 * 16 3 2 18 18 C 1.38093 * 119.93003 * 180.02562 * 17 16 3 19 19 C 1.50690 * 119.96304 * 179.97438 * 18 17 16 20 20 C 1.38305 * 120.07045 * 0.02562 * 18 17 16 21 21 C 1.38263 * 120.14318 * 359.97438 * 20 18 17 22 22 C 1.38140 * 120.06738 * 359.72488 * 21 20 18 23 23 C 1.50702 * 120.03628 * 180.27435 * 22 21 20 24 24 H 1.09003 * 109.47189 * 179.66286 * 1 2 3 25 25 H 1.09001 * 109.47135 * 299.66249 * 1 2 3 26 26 H 1.08999 * 109.47199 * 59.65983 * 1 2 3 27 27 H 1.09008 * 109.46745 * 240.00068 * 2 1 3 28 28 H 1.08998 * 109.47258 * 120.00264 * 2 1 3 29 29 H 1.08997 * 109.47658 * 300.00804 * 6 4 3 30 30 H 1.09001 * 109.47081 * 60.00861 * 6 4 3 31 31 H 1.08997 * 109.47385 * 300.01002 * 7 6 4 32 32 H 1.09003 * 109.46664 * 60.00041 * 7 6 4 33 33 H 0.97002 * 119.99943 * 180.02562 * 11 10 8 34 34 H 1.08004 * 120.03168 * 359.97438 * 17 16 3 35 35 H 1.09004 * 109.47185 * 90.00230 * 19 18 17 36 36 H 1.09006 * 109.47369 * 210.00336 * 19 18 17 37 37 H 1.09002 * 109.47361 * 329.99896 * 19 18 17 38 38 H 1.07992 * 119.93134 * 180.02562 * 20 18 17 39 39 H 1.07995 * 119.96788 * 180.02562 * 21 20 18 40 40 H 1.08998 * 109.47152 * 264.94753 * 23 22 21 41 41 H 1.09001 * 109.47077 * 24.94698 * 23 22 21 42 42 H 1.08999 * 109.47072 * 144.94478 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2069 2.0293 1.1665 5 8 2.6108 3.1728 1.1666 6 6 1.9148 1.3333 2.4709 7 6 2.2110 2.2830 3.6333 8 6 1.9195 1.5869 4.9377 9 1 1.5594 0.5687 4.9376 10 6 2.1124 2.2498 6.1310 11 7 1.8585 1.6421 7.2694 12 14 2.7346 4.0112 6.1311 13 1 1.5799 4.9440 6.0856 14 1 3.5219 4.2581 7.3658 15 1 3.5964 4.2318 4.9421 16 6 2.2891 2.0276 -1.2111 17 6 1.3172 2.8185 -1.8104 18 6 1.5874 3.4546 -3.0059 19 6 0.5334 4.3124 -3.6570 20 6 2.8240 3.3045 -3.6068 21 6 3.7937 2.5179 -3.0129 22 6 3.5318 1.8839 -1.8138 23 6 4.5913 1.0317 -1.1640 24 1 -0.3634 -1.0277 -0.0060 25 1 -0.3633 0.5086 0.8930 26 1 -0.3633 0.5191 -0.8869 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.8654 1.0399 2.4992 30 1 2.5425 0.4464 2.5580 31 1 3.2604 2.5760 3.6048 32 1 1.5837 3.1702 3.5464 33 1 1.9939 2.1086 8.1090 34 1 0.3510 2.9351 -1.3422 35 1 0.6277 5.3378 -3.2997 36 1 0.6648 4.2910 -4.7389 37 1 -0.4549 3.9287 -3.4035 38 1 3.0330 3.8033 -4.5415 39 1 4.7584 2.4029 -3.4843 40 1 4.4438 -0.0104 -1.4474 41 1 5.5762 1.3620 -1.4940 42 1 4.5202 1.1271 -0.0805 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361505642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:38:56 Heat of formation + Delta-G solvation = -45.206177 kcal Electronic energy + Delta-G solvation = -21435.428270 eV Core-core repulsion = 18378.994215 eV Total energy + Delta-G solvation = -3056.434056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74635 -39.79705 -37.08333 -35.63017 -34.64268 -33.41111 -32.11630 -30.43542 -30.14635 -28.11290 -25.77132 -24.52309 -24.07599 -22.89040 -21.69802 -19.96501 -19.10789 -18.01095 -17.55522 -17.09751 -16.57779 -16.24951 -16.12443 -15.35615 -14.90568 -14.81091 -14.71952 -14.53178 -14.47826 -14.14032 -13.85204 -13.63408 -13.54343 -13.44910 -12.97639 -12.83501 -12.80217 -12.46842 -12.31384 -12.14925 -12.09366 -12.07095 -11.89340 -11.73367 -11.41720 -10.83493 -10.79595 -9.96233 -9.75321 -9.35744 -8.33226 -6.35845 0.27950 0.39372 1.30412 1.32595 1.47760 1.56534 1.94701 2.32944 2.69076 3.02351 3.74914 3.87859 3.89599 4.01026 4.07831 4.24809 4.27348 4.31155 4.35497 4.38909 4.54786 4.57176 4.69391 4.72306 4.79695 4.81250 4.84143 4.88120 4.98942 5.03521 5.09647 5.26747 5.29513 5.34245 5.39467 5.41201 5.55361 5.57690 5.63161 5.73072 6.12384 6.21163 6.27490 6.69846 7.19503 7.29571 8.82333 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021997 B = 0.004472 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.621342 B = 6258.997523 C = 6494.689556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.570 5.570 4 C 0.517 3.483 5 O -0.577 6.577 6 C -0.111 4.111 7 C 0.007 3.993 8 C -0.527 4.527 9 H 0.053 0.947 10 C 0.018 3.982 11 N -0.941 5.941 12 Si 0.934 3.066 13 H -0.269 1.269 14 H -0.275 1.275 15 H -0.265 1.265 16 C 0.123 3.877 17 C -0.126 4.126 18 C -0.094 4.094 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.103 4.103 23 C -0.107 4.107 24 H 0.093 0.907 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.008 0.992 32 H 0.005 0.995 33 H 0.268 0.732 34 H 0.113 0.887 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 -2.199 -26.304 26.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.300 5.300 4 C 0.308 3.692 5 O -0.456 6.456 6 C -0.150 4.150 7 C -0.031 4.031 8 C -0.565 4.565 9 H 0.072 0.928 10 C -0.180 4.180 11 N -0.581 5.581 12 Si 0.758 3.242 13 H -0.194 1.194 14 H -0.201 1.201 15 H -0.190 1.190 16 C 0.033 3.967 17 C -0.146 4.146 18 C -0.095 4.095 19 C -0.167 4.167 20 C -0.135 4.135 21 C -0.132 4.132 22 C -0.104 4.104 23 C -0.164 4.164 24 H 0.111 0.889 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.026 0.974 32 H 0.023 0.977 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.321 -1.606 -26.087 26.138 hybrid contribution 0.058 0.765 0.860 1.153 sum 0.379 -0.842 -25.226 25.243 Atomic orbital electron populations 1.22197 0.94878 1.03745 1.01840 1.21907 0.95381 0.79762 1.04810 1.45615 1.66080 1.15309 1.02974 1.21409 0.75621 0.86028 0.86149 1.90642 1.46972 1.20093 1.87910 1.21544 1.04171 0.99877 0.89440 1.19216 0.96115 0.94961 0.92821 1.21372 1.44049 1.00642 0.90409 0.92842 1.25728 0.95146 1.01857 0.95267 1.70012 1.50713 1.39240 0.98172 0.85902 0.79444 0.80941 0.77865 1.19434 1.20066 1.18975 1.17652 0.93946 0.97755 0.87320 1.21311 0.99121 0.97888 0.96242 1.20120 0.96831 0.98069 0.94451 1.20813 0.96230 0.98340 1.01268 1.21403 0.92386 0.98646 1.01028 1.21251 1.00650 0.96977 0.94293 1.20370 0.94060 0.99705 0.96266 1.20699 0.96866 0.99550 0.99239 0.88856 0.93460 0.92592 0.88345 0.88814 0.87977 0.87778 0.97383 0.97656 0.92316 0.86926 0.91121 0.89314 0.91333 0.82984 0.83210 0.89314 0.90192 0.94137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 10.21 71.98 0.73 -2.56 16 2 C 0.10 2.18 5.89 86.38 0.51 2.69 16 3 N -0.57 -16.93 1.63 -631.25 -1.03 -17.96 16 4 C 0.52 20.07 7.25 87.66 0.64 20.71 16 5 O -0.58 -27.69 15.95 -3.03 -0.05 -27.74 16 6 C -0.11 -4.40 4.22 29.85 0.13 -4.27 16 7 C 0.01 0.35 3.33 29.85 0.10 0.45 16 8 C -0.53 -30.67 9.66 25.60 0.25 -30.42 16 9 H 0.05 3.25 7.99 -2.91 -0.02 3.22 16 10 C 0.02 1.08 5.47 84.65 0.46 1.54 16 11 N -0.94 -59.04 13.96 21.44 0.30 -58.74 16 12 Si 0.93 47.49 27.47 68.60 1.88 49.37 16 13 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 15 H -0.27 -13.58 6.54 99.48 0.65 -12.93 16 16 C 0.12 3.56 4.43 38.16 0.17 3.73 16 17 C -0.13 -3.45 9.62 22.39 0.22 -3.23 16 18 C -0.09 -2.06 5.88 -19.89 -0.12 -2.18 16 19 C -0.11 -1.73 10.01 71.23 0.71 -1.01 16 20 C -0.12 -2.23 9.70 22.29 0.22 -2.01 16 21 C -0.11 -2.32 9.68 22.25 0.22 -2.11 16 22 C -0.10 -2.61 5.90 -19.74 -0.12 -2.73 16 23 C -0.11 -2.41 9.70 71.24 0.69 -1.72 16 24 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.10 6.99 -2.39 -0.02 1.08 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 1.67 8.03 -2.38 -0.02 1.65 16 28 H 0.09 1.91 6.52 -2.39 -0.02 1.89 16 29 H 0.10 3.72 6.93 -2.39 -0.02 3.70 16 30 H 0.10 3.72 7.40 -2.39 -0.02 3.71 16 31 H 0.01 0.42 7.16 -2.39 -0.02 0.41 16 32 H 0.01 0.27 7.52 -2.39 -0.02 0.25 16 33 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 34 H 0.11 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.09 0.98 8.09 -2.38 -0.02 0.96 16 37 H 0.07 1.02 8.08 -2.39 -0.02 1.01 16 38 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 1.52 8.05 -2.39 -0.02 1.50 16 42 H 0.04 1.14 7.30 -2.39 -0.02 1.12 16 Total: -1.00 -75.51 345.82 6.83 -68.68 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.93 Total: 9.53 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: 4.80 Total: -23.13 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -0.73 Total: -76.70 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.88 Total: 49.37 kcal Total: -75.51 6.83 -68.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361505642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.470 kcal (2) G-P(sol) polarization free energy of solvation -75.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds