Wall clock time and date at job start Thu Apr 9 2020 13:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35667 * 125.69444 * 2 1 4 4 Cl 1.73598 * 125.58529 * 0.02562 * 3 2 1 5 5 C 1.35729 * 108.82776 * 180.26781 * 3 2 1 6 6 Cl 1.73601 * 126.06079 * 179.74840 * 5 3 2 7 7 C 1.39786 * 107.87458 * 359.73486 * 5 3 2 8 8 C 1.37801 * 125.69374 * 179.80618 * 2 1 3 9 9 C 1.46538 * 126.22424 * 359.97438 * 8 2 1 10 10 O 1.21716 * 119.99906 * 4.66202 * 9 8 2 11 11 N 1.34782 * 120.00454 * 184.67071 * 9 8 2 12 12 C 1.46496 * 120.00140 * 174.95023 * 11 9 8 13 13 C 1.50702 * 109.46891 * 180.27173 * 12 11 9 14 14 H 1.08003 * 120.00329 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00040 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00011 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99883 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47095 * 89.99922 * 17 15 13 19 19 H 1.48498 * 109.46953 * 209.99741 * 17 15 13 20 20 H 1.48497 * 109.46997 * 329.99904 * 17 15 13 21 21 H 1.09008 * 109.47094 * 274.85950 * 1 2 3 22 22 H 1.09001 * 109.47267 * 34.85099 * 1 2 3 23 23 H 1.08993 * 109.47272 * 154.85526 * 1 2 3 24 24 H 1.08000 * 126.43258 * 179.97438 * 7 5 3 25 25 H 0.97001 * 119.99424 * 355.21878 * 11 9 8 26 26 H 1.09003 * 109.47074 * 300.26573 * 12 11 9 27 27 H 1.08993 * 109.47440 * 60.27535 * 12 11 9 28 28 H 0.97009 * 119.99926 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2566 1.1018 0.0000 4 17 1.6994 2.7460 0.0006 5 6 3.5555 0.7080 -0.0060 6 17 4.9405 1.7545 -0.0146 7 6 3.5801 -0.6896 -0.0038 8 6 2.2690 -1.1191 0.0038 9 6 1.8142 -2.5121 0.0090 10 8 0.6265 -2.7649 -0.0753 11 7 2.7109 -3.5136 0.1074 12 6 2.2512 -4.8996 0.2241 13 6 3.4424 -5.8171 0.3252 14 1 4.4420 -5.4086 0.3050 15 6 3.2563 -7.1780 0.4446 16 7 4.2959 -7.9786 0.5333 17 14 1.5274 -7.8846 0.4802 18 1 1.0918 -8.1972 -0.9046 19 1 1.5170 -9.1264 1.2946 20 1 0.5993 -6.8921 1.0790 21 1 -0.3634 0.0871 1.0240 22 1 -0.3634 0.8433 -0.5873 23 1 -0.3633 -0.9302 -0.4366 24 1 4.4601 -1.3156 -0.0076 25 1 3.6606 -3.3161 0.1048 26 1 1.6353 -5.0042 1.1174 27 1 1.6636 -5.1628 -0.6553 28 1 4.1649 -8.9362 0.6169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701262710.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:43:35 Heat of formation + Delta-G solvation = -22.943858 kcal Electronic energy + Delta-G solvation = -16446.726353 eV Core-core repulsion = 13356.608785 eV Total energy + Delta-G solvation = -3090.117568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.017 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -42.70747 -40.15315 -37.90557 -37.53410 -36.30676 -34.61162 -33.81998 -31.17083 -29.23978 -27.66298 -24.90987 -23.21422 -21.88784 -21.12333 -19.56706 -18.57086 -17.29365 -17.14432 -17.06576 -16.18594 -15.96183 -15.46204 -15.20924 -14.77580 -14.56035 -14.33964 -14.14412 -14.13276 -13.32559 -13.05053 -12.95651 -12.70419 -12.49293 -12.44182 -11.99281 -11.91276 -11.64577 -11.10101 -10.90112 -10.10087 -9.92461 -9.34226 -8.37148 -6.44753 0.07627 0.30549 0.98523 1.07332 1.36198 1.38431 1.49720 1.73448 2.16504 2.30261 2.45796 2.98427 3.58500 3.68172 3.91264 4.23797 4.36266 4.53201 4.63743 4.76052 5.02548 5.07158 5.26055 5.39723 5.42111 5.58361 6.08158 6.54744 6.70634 7.09534 7.25553 8.77380 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.030499 B = 0.004260 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.850059 B = 6571.488417 C = 7461.933258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.397 5.397 3 C 0.092 3.908 4 Cl 0.020 6.980 5 C -0.108 4.108 6 Cl -0.023 7.023 7 C -0.113 4.113 8 C -0.028 4.028 9 C 0.580 3.420 10 O -0.584 6.584 11 N -0.687 5.687 12 C 0.235 3.765 13 C -0.548 4.548 14 H 0.061 0.939 15 C 0.027 3.973 16 N -0.931 5.931 17 Si 0.937 3.063 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.256 1.256 21 H 0.095 0.905 22 H 0.111 0.889 23 H 0.101 0.899 24 H 0.180 0.820 25 H 0.411 0.589 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.774 21.345 -1.060 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.073 5.073 3 C -0.053 4.053 4 Cl 0.048 6.952 5 C -0.143 4.143 6 Cl 0.006 6.994 7 C -0.139 4.139 8 C -0.143 4.143 9 C 0.367 3.633 10 O -0.467 6.467 11 N -0.335 5.335 12 C 0.112 3.888 13 C -0.586 4.586 14 H 0.079 0.921 15 C -0.174 4.174 16 N -0.569 5.569 17 Si 0.761 3.239 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.180 1.180 21 H 0.113 0.887 22 H 0.129 0.871 23 H 0.120 0.880 24 H 0.197 0.803 25 H 0.248 0.752 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.877 21.153 -1.083 21.981 hybrid contribution 0.024 -0.351 0.048 0.355 sum -5.853 20.802 -1.035 21.634 Atomic orbital electron populations 1.22648 0.73489 1.06799 1.05591 1.43907 1.08218 1.02991 1.52137 1.20733 0.88960 0.83141 1.12425 1.98404 1.89724 1.09991 1.97062 1.19619 0.86967 0.91618 1.16061 1.98340 1.38839 1.64730 1.97480 1.21480 0.95777 0.92847 1.03791 1.19854 0.90028 0.86992 1.17402 1.17067 0.85582 0.83788 0.76857 1.90722 1.17309 1.85235 1.53479 1.45701 1.10164 1.06376 1.71274 1.19203 0.95226 0.78162 0.96223 1.21265 0.93141 0.91893 1.52257 0.92089 1.25591 1.00975 0.97207 0.93609 1.69985 1.31986 1.04785 1.50166 0.85862 0.80187 0.78590 0.79281 1.19038 1.20133 1.17979 0.88684 0.87092 0.88019 0.80310 0.75210 0.96125 0.96254 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.12 10.53 127.77 1.35 2.46 15 2 N -0.40 -10.11 3.17 -522.94 -1.66 -11.77 15 3 C 0.09 2.15 7.39 83.52 0.62 2.76 15 4 Cl 0.02 0.36 28.60 -2.72 -0.08 0.28 15 5 C -0.11 -2.61 6.66 22.06 0.15 -2.46 15 6 Cl -0.02 -0.48 29.12 -2.72 -0.08 -0.56 15 7 C -0.11 -2.89 10.34 22.58 0.23 -2.66 15 8 C -0.03 -0.84 6.89 40.31 0.28 -0.56 15 9 C 0.58 21.14 7.77 86.41 0.67 21.81 15 10 O -0.58 -24.12 14.57 -4.40 -0.06 -24.19 15 11 N -0.69 -26.49 5.53 -470.94 -2.61 -29.10 15 12 C 0.23 10.95 4.50 85.63 0.39 11.34 15 13 C -0.55 -29.20 9.83 25.60 0.25 -28.95 15 14 H 0.06 3.43 7.84 -2.91 -0.02 3.40 15 15 C 0.03 1.46 5.47 84.65 0.46 1.93 15 16 N -0.93 -54.53 13.96 21.45 0.30 -54.23 15 17 Si 0.94 42.51 27.47 68.60 1.88 44.40 15 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 19 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 20 H -0.26 -11.29 6.54 99.48 0.65 -10.64 15 21 H 0.09 1.72 8.14 -2.38 -0.02 1.70 15 22 H 0.11 1.65 7.91 -2.39 -0.02 1.63 15 23 H 0.10 2.56 5.98 -2.39 -0.01 2.55 15 24 H 0.18 3.93 7.45 -2.91 -0.02 3.90 15 25 H 0.41 14.00 7.21 -92.71 -0.67 13.33 15 26 H 0.02 1.00 7.20 -2.39 -0.02 0.99 15 27 H 0.02 0.94 7.57 -2.39 -0.02 0.92 15 28 H 0.27 14.88 8.31 -92.70 -0.77 14.11 15 Total: -1.00 -62.60 280.17 2.58 -60.02 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.49 Total: 9.48 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.39 Total: 5.67 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -3.96 Total: -95.09 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.06 Total: -24.19 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.88 Total: 44.40 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.16 Total: -0.28 kcal Total: -62.60 2.58 -60.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701262710.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.072 kcal (2) G-P(sol) polarization free energy of solvation -62.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds