Wall clock time and date at job start Thu Apr 9 2020 13:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 119.99662 * 2 1 4 4 H 1.08008 * 119.99896 * 203.34316 * 3 2 1 5 5 C 1.38816 * 120.00161 * 23.34222 * 3 2 1 6 6 N 1.31617 * 119.99946 * 10.67874 * 5 3 2 7 7 Si 1.86802 * 119.99968 * 190.68409 * 5 3 2 8 8 H 1.48504 * 109.46988 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47304 * 119.99707 * 7 5 3 10 10 H 1.48498 * 109.47042 * 240.00297 * 7 5 3 11 11 S 1.65600 * 120.00397 * 179.97438 * 2 1 3 12 12 O 1.42094 * 106.40359 * 156.45957 * 11 2 1 13 13 O 1.42103 * 106.39888 * 23.54183 * 11 2 1 14 14 C 1.76203 * 107.21595 * 270.00349 * 11 2 1 15 15 C 1.38608 * 120.42269 * 114.98081 * 14 11 2 16 16 C 1.38669 * 118.43383 * 180.02562 * 15 14 11 17 17 C 1.38185 * 119.19501 * 0.02562 * 16 15 14 18 18 N 1.31883 * 120.77821 * 359.97438 * 17 16 15 19 19 C 1.31977 * 121.70559 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 119.63057 * 180.02562 * 19 18 17 21 21 H 1.08999 * 109.47217 * 274.14712 * 1 2 3 22 22 H 1.08994 * 109.47173 * 34.15022 * 1 2 3 23 23 H 1.08998 * 109.46804 * 154.14538 * 1 2 3 24 24 H 0.96996 * 119.99492 * 179.97438 * 6 5 3 25 25 H 1.07999 * 120.78154 * 0.03514 * 15 14 11 26 26 H 1.07998 * 120.40281 * 180.02562 * 16 15 14 27 27 H 1.07995 * 119.61214 * 180.25661 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1634 1.2243 -0.3706 5 6 1.5407 2.3389 0.4763 6 7 0.3943 2.2607 1.1180 7 14 2.3485 4.0015 0.2065 8 1 3.6215 3.8187 -0.5360 9 1 1.4377 4.8728 -0.5787 10 1 2.6288 4.6347 1.5201 11 16 2.2931 -1.4341 0.0006 12 8 3.5760 -1.1569 -0.5439 13 8 1.4115 -2.4067 -0.5434 14 6 2.5538 -1.8850 1.6839 15 6 1.9606 -3.0240 2.2054 16 6 2.1932 -3.3397 3.5355 17 6 3.0027 -2.5144 4.2925 18 7 3.5514 -1.4379 3.7640 19 6 3.3532 -1.1067 2.5020 20 17 4.1029 0.3222 1.8616 21 1 -0.3633 0.0743 1.0250 22 1 -0.3633 0.8504 -0.5769 23 1 -0.3633 -0.9248 -0.4482 24 1 -0.0310 3.0663 1.4511 25 1 1.3320 -3.6508 1.5903 26 1 1.7473 -4.2200 3.9743 27 1 3.1918 -2.7562 5.3279 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758410740.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:43:47 Heat of formation + Delta-G solvation = -46.514662 kcal Electronic energy + Delta-G solvation = -17912.786232 eV Core-core repulsion = 14823.690264 eV Total energy + Delta-G solvation = -3089.095969 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06862 -37.92079 -37.55590 -37.37570 -36.33916 -33.70639 -33.36669 -32.09510 -28.33430 -25.45403 -24.95752 -24.59794 -20.37586 -19.37507 -18.81841 -18.36153 -17.66713 -17.60547 -16.40736 -16.12328 -15.55637 -15.48659 -15.05922 -14.63942 -14.43062 -13.72403 -13.68104 -13.26374 -13.05536 -12.79059 -12.72875 -12.57570 -12.40051 -12.17930 -12.00865 -11.92877 -11.84500 -11.23991 -11.04543 -10.66779 -10.11544 -9.93040 -8.41764 -5.90158 -0.43923 -0.08674 0.03055 0.81804 1.47017 1.49202 1.60182 2.21866 2.43072 2.65359 2.92331 3.18205 3.55698 3.60986 3.83519 4.13659 4.25656 4.35123 4.60137 4.80622 4.91941 5.04867 5.25679 5.36614 5.45809 5.60255 6.40420 6.55757 6.73972 7.23207 8.54635 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.021259 B = 0.009915 C = 0.008478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.798574 B = 2823.311843 C = 3301.813678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.806 5.806 3 C -0.237 4.237 4 H 0.108 0.892 5 C 0.010 3.990 6 N -0.843 5.843 7 Si 0.963 3.037 8 H -0.260 1.260 9 H -0.262 1.262 10 H -0.272 1.272 11 S 2.522 3.478 12 O -0.999 6.999 13 O -1.015 7.015 14 C -0.722 4.722 15 C -0.001 4.001 16 C -0.179 4.179 17 C 0.140 3.860 18 N -0.520 5.520 19 C 0.234 3.766 20 Cl -0.012 7.012 21 H 0.046 0.954 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.282 0.718 25 H 0.163 0.837 26 H 0.194 0.806 27 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 -4.654 5.861 7.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.630 5.630 3 C -0.387 4.387 4 H 0.125 0.875 5 C -0.202 4.202 6 N -0.483 5.483 7 Si 0.785 3.215 8 H -0.184 1.184 9 H -0.186 1.186 10 H -0.198 1.198 11 S 2.620 3.380 12 O -0.989 6.989 13 O -1.005 7.005 14 C -0.803 4.803 15 C -0.028 4.028 16 C -0.199 4.199 17 C -0.017 4.017 18 N -0.232 5.232 19 C 0.069 3.931 20 Cl 0.017 6.983 21 H 0.065 0.935 22 H 0.092 0.908 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.180 0.820 26 H 0.211 0.789 27 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.431 -4.725 5.729 7.438 hybrid contribution -0.078 0.443 0.236 0.507 sum 0.353 -4.282 5.965 7.351 Atomic orbital electron populations 1.21294 0.78257 1.00546 1.01595 1.54237 1.13699 1.18520 1.76561 1.20139 1.01313 0.83512 1.33765 0.87488 1.26287 0.96691 1.03065 0.94170 1.70122 1.15869 1.31497 1.30792 0.85281 0.79512 0.77792 0.78894 1.18404 1.18624 1.19761 1.12271 0.73572 0.74629 0.77513 1.93338 1.42290 1.84651 1.78629 1.93275 1.65501 1.62453 1.79249 1.32865 1.08948 1.05627 1.32853 1.21717 0.92505 0.91806 0.96727 1.22772 1.00259 1.03011 0.93865 1.23726 0.89517 0.86741 1.01694 1.67185 1.24929 1.19732 1.11390 1.21378 0.91523 0.89726 0.90440 1.98471 1.81342 1.35496 1.83021 0.93518 0.90781 0.92560 0.90749 0.81975 0.78898 0.77198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.65 8.92 127.77 1.14 6.79 15 2 N -0.81 -38.65 3.31 -364.89 -1.21 -39.86 15 3 C -0.24 -11.59 6.67 84.03 0.56 -11.03 15 4 H 0.11 5.38 6.47 -2.91 -0.02 5.36 15 5 C 0.01 0.45 5.14 84.86 0.44 0.89 15 6 N -0.84 -39.36 10.61 21.65 0.23 -39.13 15 7 Si 0.96 37.17 29.57 68.60 2.03 39.19 15 8 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 9 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 10 H -0.27 -10.39 7.11 99.48 0.71 -9.69 15 11 S 2.52 120.16 5.18 -56.49 -0.29 119.87 15 12 O -1.00 -52.28 15.32 -128.00 -1.96 -54.24 15 13 O -1.02 -49.15 15.61 -128.00 -2.00 -51.15 15 14 C -0.72 -30.77 5.93 22.38 0.13 -30.64 15 15 C 0.00 -0.03 9.66 22.46 0.22 0.18 15 16 C -0.18 -4.52 10.11 22.36 0.23 -4.30 15 17 C 0.14 3.80 11.18 84.67 0.95 4.75 15 18 N -0.52 -19.59 10.34 -186.70 -1.93 -21.52 15 19 C 0.23 10.14 7.26 84.70 0.61 10.75 15 20 Cl -0.01 -0.55 23.38 -2.72 -0.06 -0.61 15 21 H 0.05 2.07 7.40 -2.39 -0.02 2.05 15 22 H 0.07 3.24 7.23 -2.39 -0.02 3.22 15 23 H 0.06 2.29 6.93 -2.39 -0.02 2.28 15 24 H 0.28 12.24 8.31 -92.71 -0.77 11.47 15 25 H 0.16 4.98 7.44 -2.91 -0.02 4.96 15 26 H 0.19 2.76 8.06 -2.91 -0.02 2.74 15 27 H 0.21 3.44 8.06 -2.91 -0.02 3.42 15 Total: -1.00 -62.74 259.41 0.29 -62.45 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.21 Total: 7.62 kcal Atomic # 6 Polarization: -26.89 SS G_CDS: 4.27 Total: -22.61 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -2.91 Total: -100.52 kcal Atomic # 8 Polarization: -101.43 SS G_CDS: -3.96 Total: -105.39 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.19 kcal Atomic # 16 Polarization: 120.16 SS G_CDS: -0.29 Total: 119.87 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.06 Total: -0.61 kcal Total: -62.74 0.29 -62.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758410740.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.931 kcal (2) G-P(sol) polarization free energy of solvation -62.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds