Wall clock time and date at job start Thu Apr 9 2020 13:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31428 * 1 3 3 Si 1.86797 * 120.00004 * 2 1 4 4 H 1.48500 * 109.47392 * 269.99933 * 3 2 1 5 5 H 1.48503 * 109.46908 * 30.00322 * 3 2 1 6 6 H 1.48505 * 109.47151 * 150.00109 * 3 2 1 7 7 C 1.38798 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99401 * 179.97438 * 7 2 1 9 9 O 1.34841 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.34901 * 116.99826 * 179.97438 * 9 7 2 11 11 O 1.21666 * 119.99870 * 0.02562 * 10 9 7 12 12 C 1.46328 * 120.00004 * 180.02562 * 10 9 7 13 13 C 1.37074 * 126.13114 * 179.97438 * 12 10 9 14 14 N 1.30571 * 114.00491 * 179.76393 * 13 12 10 15 15 C 1.30373 * 117.32267 * 0.51869 * 14 13 12 16 16 C 1.47776 * 124.74230 * 179.76214 * 15 14 13 17 17 C 1.40037 * 120.56037 * 359.70033 * 16 15 14 18 18 C 1.38338 * 118.28987 * 179.97438 * 17 16 15 19 19 C 1.38365 * 119.30914 * 0.02562 * 18 17 16 20 20 N 1.31919 * 121.08339 * 0.02562 * 19 18 17 21 21 C 1.31702 * 121.88067 * 359.66128 * 20 19 18 22 22 S 1.70925 * 110.52109 * 359.50078 * 15 14 13 23 23 H 0.97001 * 120.00410 * 359.97438 * 1 2 3 24 24 H 1.07994 * 122.99439 * 0.03312 * 13 12 10 25 25 H 1.08007 * 120.85272 * 0.02562 * 17 16 15 26 26 H 1.07997 * 120.34761 * 180.02562 * 18 17 16 27 27 H 1.08000 * 119.45480 * 180.02562 * 19 18 17 28 28 H 1.07998 * 119.71897 * 180.31208 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5459 1.4401 0.7000 7 6 2.0082 -1.2020 -0.0005 8 1 3.0882 -1.2020 -0.0010 9 8 1.3340 -2.3698 -0.0005 10 6 2.0687 -3.5012 -0.0016 11 8 3.2837 -3.4375 -0.0021 12 6 1.4044 -4.8049 -0.0022 13 6 2.0239 -6.0277 -0.0038 14 7 1.2000 -7.0406 0.0008 15 6 -0.0762 -6.7740 -0.0042 16 6 -1.1489 -7.7904 -0.0052 17 6 -0.8364 -9.1554 -0.0069 18 6 -1.8775 -10.0664 -0.0072 19 6 -3.1817 -9.6044 -0.0064 20 7 -3.4465 -8.3120 -0.0059 21 6 -2.4905 -7.4061 0.0006 22 16 -0.3353 -5.0845 -0.0022 23 1 -0.4851 0.8400 0.0004 24 1 3.0977 -6.1430 -0.0043 25 1 0.1911 -9.4884 -0.0070 26 1 -1.6744 -11.1271 -0.0080 27 1 -3.9963 -10.3135 -0.0062 28 1 -2.7470 -6.3571 0.0059 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761608525.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 13:43:49 Heat of formation + Delta-G solvation = 3.484509 kcal Electronic energy + Delta-G solvation = -17288.403671 eV Core-core repulsion = 14203.908679 eV Total energy + Delta-G solvation = -3084.494992 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.035 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.37336 -39.47710 -38.66012 -35.32772 -33.19983 -32.40029 -32.09090 -29.60094 -26.47499 -25.35310 -23.90378 -23.07289 -21.74896 -19.14097 -18.61842 -17.90321 -17.15121 -16.59764 -15.87851 -15.76164 -15.06902 -14.94949 -14.47293 -14.39248 -13.91354 -13.74076 -13.60666 -13.24321 -12.68303 -12.18295 -11.82222 -11.41279 -11.26077 -10.70358 -10.54547 -10.28989 -10.07317 -9.78021 -9.71916 -9.70491 -9.30878 -9.19829 -8.79011 -8.28252 -6.65861 -4.24553 -0.01923 1.00919 1.23282 1.39047 1.90328 2.76456 3.06601 3.08149 3.14813 3.65053 3.73038 3.77949 3.89922 4.28457 4.40231 4.64463 4.71666 4.81464 4.95065 5.01306 5.34104 5.44233 5.52253 5.88687 5.96696 6.27449 6.40278 6.53761 7.16739 7.69741 7.69840 7.76934 8.46820 8.81010 9.56944 10.50442 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.037438 B = 0.003977 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.728852 B = 7038.682221 C = 7776.566725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.041 3.959 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.365 4.365 8 H 0.103 0.897 9 O -0.200 6.200 10 C 0.457 3.543 11 O -0.542 6.542 12 C -0.228 4.228 13 C 0.090 3.910 14 N -0.465 5.465 15 C 0.030 3.970 16 C -0.064 4.064 17 C -0.035 4.035 18 C -0.173 4.173 19 C 0.101 3.899 20 N -0.478 5.478 21 C 0.118 3.882 22 S 0.248 5.752 23 H 0.275 0.725 24 H 0.189 0.811 25 H 0.147 0.853 26 H 0.140 0.860 27 H 0.159 0.841 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.553 -14.942 -0.003 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.166 4.166 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.442 4.442 8 H 0.120 0.880 9 O -0.106 6.106 10 C 0.304 3.696 11 O -0.441 6.441 12 C -0.351 4.351 13 C -0.069 4.069 14 N -0.180 5.180 15 C -0.240 4.240 16 C -0.070 4.070 17 C -0.064 4.064 18 C -0.193 4.193 19 C -0.056 4.056 20 N -0.186 5.186 21 C -0.042 4.042 22 S 0.508 5.492 23 H 0.085 0.915 24 H 0.206 0.794 25 H 0.164 0.836 26 H 0.158 0.842 27 H 0.176 0.824 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.098 -14.354 0.007 16.013 hybrid contribution 2.338 0.387 -0.011 2.370 sum -4.759 -13.968 -0.004 14.756 Atomic orbital electron populations 1.69979 1.06190 1.28486 1.43578 1.25490 0.95965 0.99222 0.95910 0.85563 0.79112 0.78943 0.79024 1.19562 1.20039 1.18780 1.21449 0.92830 0.79396 1.50505 0.87953 1.83930 1.39206 1.13316 1.74158 1.19003 0.85527 0.83678 0.81420 1.90710 1.14032 1.87063 1.52297 1.25560 0.96175 0.97800 1.15577 1.22254 1.01071 0.84224 0.99357 1.66255 1.00759 1.34980 1.15959 1.24991 0.93891 0.97515 1.07577 1.18925 0.91752 0.92418 1.03864 1.21757 1.00838 0.91185 0.92631 1.22143 0.93600 1.01133 1.02413 1.22918 0.96028 0.92263 0.94409 1.67701 1.36383 1.02388 1.12155 1.22909 0.87093 0.99759 0.94429 1.84138 1.04189 0.98403 1.62495 0.91471 0.79418 0.83572 0.84226 0.82393 0.82339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.54 13.67 55.49 0.76 -22.78 15 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 15 3 Si 0.95 20.23 29.55 -169.99 -5.02 15.21 15 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 15 7 C -0.37 -10.39 9.65 30.94 0.30 -10.09 15 8 H 0.10 2.91 6.86 -52.49 -0.36 2.55 15 9 O -0.20 -5.58 9.63 -22.07 -0.21 -5.79 15 10 C 0.46 11.50 7.86 33.98 0.27 11.77 15 11 O -0.54 -14.57 16.12 -19.39 -0.31 -14.89 15 12 C -0.23 -4.66 6.52 -36.75 -0.24 -4.90 15 13 C 0.09 1.62 11.16 -18.51 -0.21 1.41 15 14 N -0.47 -7.73 10.11 -11.98 -0.12 -7.85 15 15 C 0.03 0.46 7.14 -14.27 -0.10 0.36 15 16 C -0.06 -0.85 5.89 -104.83 -0.62 -1.46 15 17 C -0.04 -0.39 9.80 -38.87 -0.38 -0.77 15 18 C -0.17 -1.50 10.10 -39.50 -0.40 -1.90 15 19 C 0.10 0.95 11.17 -17.47 -0.20 0.75 15 20 N -0.48 -5.79 10.35 -12.90 -0.13 -5.93 15 21 C 0.12 1.48 10.74 -17.12 -0.18 1.30 15 22 S 0.25 4.23 21.89 -107.50 -2.35 1.87 15 23 H 0.28 6.96 8.31 -40.82 -0.34 6.62 15 24 H 0.19 3.09 8.06 -52.49 -0.42 2.66 15 25 H 0.15 1.53 7.87 -52.48 -0.41 1.12 15 26 H 0.14 0.77 8.06 -52.49 -0.42 0.34 15 27 H 0.16 0.96 8.06 -52.49 -0.42 0.54 15 28 H 0.16 1.83 7.24 -52.49 -0.38 1.45 15 LS Contribution 282.61 15.07 4.26 4.26 Total: -1.00 -32.16 282.61 -6.55 -38.71 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -1.56 Total: -0.27 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.85 Total: -2.54 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.50 Total: -36.56 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.53 Total: -20.68 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -2.35 Total: 1.87 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.16 -6.55 -38.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761608525.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.192 kcal (2) G-P(sol) polarization free energy of solvation -32.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds